Clone BO04204 Report

Search the DGRC for BO04204

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptRpS15Ab-RA
Protein status:BO04204.pep: validated full length
Sequenced Size:424

Clone Sequence Records

BO04204.3prime Sequence

422 bp (421 high quality bases) assembled on 2005-12-01

> BO04204.3prime
ATGGTCTAGAAAGCTTGCGAAGAAGAAGCCGAGAATTTTGCCTCCCAAAT
GTTTTCTCCTAGCCTCCTCGTGGTCCATGATGCCGCCAGAGGTGGTGAGC
ACAACGTAACCAAACTGACGCGAGGGCAACAGATTGTTGGTCCACTTCTC
GATGTCGTTGATGGGCGCATCGAAGCGGGGCGAGATGACGCCGCACTTGT
TTAGCCGACCGGTCAGGTTGACAACGATCTTGCCGGCACGGTGATCCTCG
ACGATCTCGAATTCGCCGATATAGCCATGCTTCATCATCACGGTCAGGAA
CTTGATGATCACCTTGGAGCAGGGACGCAGCAGCACCTGCCGCTTGCCAC
GCTTCTCGGCGTTGTTTATGCACTTCAGGGCATCGGCCAATACGTTCATA
CGCACCATGTCGACTGATAACT

BO04204.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12324-PA 393 RpS15Ab-RA 1..390 408..19 1950 100 Minus
CG2033-PC 393 RpS15Aa-RC 1..390 408..19 1775 98.2 Minus
CG2033-PA 393 RpS15Aa-RA 1..390 408..19 1775 98.2 Minus
CG2033-PD 393 RpS15Aa-RD 1..390 408..19 1775 98.2 Minus
CG2033-PE 393 RpS15Aa-RE 1..390 408..19 1775 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Ab-RA 724 CG12324-RA 138..527 408..19 1950 100 Minus
RpS15Aa-RF 674 CG2033-RF 69..459 409..19 1850 98.2 Minus
RpS15Aa-RE 741 CG2033-RE 136..526 409..19 1850 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10821813..10822202 408..19 1950 100 Minus
X 23542271 X 13335988..13336378 19..409 1850 98.2 Plus
2L 23513712 2L 14747021..14747075 19..73 245 96.4 Plus
Blast to na_te.dros performed on 2015-02-04 19:18:37 has no hits.

BO04204.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:33 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12324-PA 1..393 18..408 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:32 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12324-PA 1..393 18..408 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:49 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 133..527 19..416 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:53 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 133..527 19..416 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:53 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10821808..10822202 19..416 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:49 Download gff for BO04204.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6709313..6709707 19..416 98   Minus

BO04204.5prime Sequence

422 bp (421 high quality bases) assembled on 2005-12-01

> BO04204.5prime
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCG
TTGTCAACCTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGCGCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCGCAAGCTTTCTAGACC

BO04204.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12324-PA 393 RpS15Ab-RA 1..390 17..406 1950 100 Plus
CG2033-PC 393 RpS15Aa-RC 1..390 17..406 1775 98.2 Plus
CG2033-PA 393 RpS15Aa-RA 1..390 17..406 1775 98.2 Plus
CG2033-PD 393 RpS15Aa-RD 1..390 17..406 1775 98.2 Plus
CG2033-PE 393 RpS15Aa-RE 1..390 17..406 1775 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Ab-RA 724 CG12324-RA 138..527 17..406 1950 100 Plus
RpS15Aa-RF 674 CG2033-RF 69..459 16..406 1850 98.2 Plus
RpS15Aa-RE 741 CG2033-RE 136..526 16..406 1850 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10821813..10822202 17..406 1950 100 Plus
X 23542271 X 13335988..13336378 406..16 1850 98.2 Minus
2L 23513712 2L 14747021..14747075 406..352 245 96.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:54:54 has no hits.

BO04204.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:34 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12324-PA 1..393 17..407 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:33 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12324-PA 1..393 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:57 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 133..527 9..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:20 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 133..527 9..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:20 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10821808..10822202 9..406 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:57 Download gff for BO04204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6709313..6709707 9..406 98   Plus

BO04204.complete Sequence

424 bp (424 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629659

> BO04204.complete
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCG
TTGTCAACCTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGCGCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCGCAAGCTTTCTAGACCAT

BO04204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Ab-RA 393 CG12324-PA 1..390 17..406 1950 100 Plus
RpS15Aa-RF 393 CG2033-PF 1..390 17..406 1845 98.2 Plus
RpS15Aa-RE 393 CG2033-PE 1..390 17..406 1845 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Ab-RA 724 CG12324-RA 138..527 17..406 1950 100 Plus
RpS15Aa-RF 674 CG2033-RF 69..459 16..406 1850 98.2 Plus
RpS15Aa-RE 741 CG2033-RE 136..526 16..406 1850 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10821813..10822202 17..406 1950 100 Plus
X 23542271 X 13335988..13336378 406..16 1850 98.2 Minus
2L 23513712 2L 14747021..14747075 406..352 245 96.4 Minus
Blast to na_te.dros performed on 2014-11-27 07:32:51 has no hits.

BO04204.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:44 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 1..393 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:02 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 138..532 9..406 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:02 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 138..527 17..408 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:44 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 138..532 9..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:30 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Ab-RA 138..527 17..408 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:30 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10821813..10822202 17..408 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:02 Download gff for BO04204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6709318..6709707 17..408 99   Plus

BO04204.pep Sequence

Translation from 16 to 424

> BO04204.pep
MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEF
EIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFG
YVVLTTSGGIMDHEEARRKHLGGKILGFFFASFLDH

BO04204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Ab-PA 130 CG12324-PA 1..130 1..130 680 100 Plus
RpS15Aa-PF 130 CG2033-PF 1..130 1..130 670 97.7 Plus
RpS15Aa-PE 130 CG2033-PE 1..130 1..130 670 97.7 Plus
RpS15Aa-PD 130 CG2033-PD 1..130 1..130 670 97.7 Plus
RpS15Aa-PA 130 CG2033-PA 1..130 1..130 670 97.7 Plus