Clone Sequence Records
BO04206.3prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-01
> BO04206.3prime
ATGGTCTAGAAAGCTTGCGAAGAATTGCTTGGCCAGTTGGATAATATTCA
TGGCCAATCGGATCTCCCGGGCGCCGCGAACGCCCAGTGCCGCCAAGTCC
TCCAGGGTCATTTGGATGAGCACCTCGATGTCGATCTCCTGGCGCGTGAA
CAGCTCTGTGAGATGCGCGTTTCCGGTGCGATCGAGCAGGGATTTGACCC
GAGGACTCAAAGTGGGGTGCTCCACCGGGGAGCAGGGCTTATAGCGTGAA
TGATGGATACTGGGAGTGGGACTTCTTGGGTCCTCCACTTTAATCTTTCG
CGCACTTTTCAACTTGGATTCCTCCTGCCTCAGCCGCGTTTCCTGCTGCA
GTCGGATATCCGGCTTTGGTCTGTCTTCTCTCTTAGTTCTCAGTAGTTTC
GAATCTCCAGATTCTCCCAGTAGCCTGGTCTCCCCATTTATAAGGGTACT
TTGACTTGTGGGCGAAAATACGGAACGCGTGCGCATAAATTTCTGTGAAA
ATCGACGGGGCAAAGTGGATTCCGATAGTCGTTTTAACCCGGACAATGCC
GGTCGACTGTTAGGAACCGTAAGATTATTGTTCTTCGGCATTCCAAAGAG
TCCGTATCTCGCGGTACCCTTCCTGCCAACGCCTCCAGTGGGCGTGACAT
CTTCGAATGTAAAAGCTTCGGTGGAGAGGGGAGTGAGTGGGGTCAGTGGG
GATGCGGGATCTCTATAGACGCGATTGTAGCGCTCCATGTCGACTGATAA
CT
BO04206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5272-PA | 723 | gnu-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gnu-RA | 923 | CG5272-RA | 102..821 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14802482..14803175 | 19..712 | 3470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:14:12 has no hits.
BO04206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:37 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:37 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5272-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:24 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 94..821 | 19..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:52 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 94..821 | 19..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:52 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14802482..14803173 | 19..710 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:24 Download gff for
BO04206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14795582..14796273 | 19..710 | 100 | <- | Plus |
BO04206.5prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-01
> BO04206.5prime
GAAGTTATCAGTCGACATGGAGCGCTACAATCGCGTCTATAGAGATCCCG
CATCCCCACTGACCCCACTCACTCCCCTCTCCACCGAAGCTTTTACATTC
GAAGATGTCACGCCCACTGGAGGCGTTGGCAGGAAGGGTACCGCGAGATA
CGGACTCTTTGGAATGCCGAAGAACAATAATCTTACGGTTCCTAACAGTC
GACCGGCATTGTCCGGGTTAAAACGACTATCGGAATCCACTTTGCCCCGT
CGATTTTCACAGAAATTTATGCGCACGCGTTCCGTATTTTCGCCCACAAG
TCAAAGTACCCTTATAAATGGGGAGACCAGGCTACTGGGAGAATCTGGAG
ATTCGAAACTACTGAGAACTAAGAGAGAAGACAGACCAAAGCCGGATATC
CGACTGCAGCAGGAAACGCGGCTGAGGCAGGAGGAATCCAAGTTGAAAAG
TGCGCGAAAGATTAAAGTGGAGGACCCAAGAAGTCCCACTCCCAGTATCC
ATCATTCACGCTATAAGCCCTGCTCCCCGGTGGAGCACCCCACTTTGAGT
CCTCGGGTCAAATCCCTGCTCGATCGCACCGGAAACGCGCATCTCACAGA
GCTGTTCACGCGCCAGGAGATCGACATCGAGGTGCTCATCCAAATGACCC
TGGAGGACTTGGCGGCACTGGGCGTTCGCGGCGCCCGGGAGATCCGATTG
GCCATGAATATTATCCAACTGGCCAAGCAATTCTTCGCAAGCTTTCTAGA
CC
BO04206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5272-PA | 723 | gnu-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gnu-RA | 923 | CG5272-RA | 102..821 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14802482..14803175 | 736..43 | 3470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:14:23 has no hits.
BO04206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:38 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:38 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5272-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:27 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 94..821 | 7..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:29 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 94..821 | 7..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:29 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14802482..14803173 | 45..736 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:27 Download gff for
BO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14795582..14796273 | 45..736 | 100 | <- | Minus |
BO04206.complete Sequence
754 bp (754 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629661
> BO04206.complete
GAAGTTATCAGTCGACATGGAGCGCTACAATCGCGTCTATAGAGATCCCG
CATCCCCACTGACCCCACTCACTCCCCTCTCCACCGAAGCTTTTACATTC
GAAGATGTCACGCCCACTGGAGGCGTTGGCAGGAAGGGTACCGCGAGATA
CGGACTCTTTGGAATGCCGAAGAACAATAATCTTACGGTTCCTAACAGTC
GACCGGCATTGTCCGGGTTAAAACGACTATCGGAATCCACTTTGCCCCGT
CGATTTTCACAGAAATTTATGCGCACGCGTTCCGTATTTTCGCCCACAAG
TCAAAGTACCCTTATAAATGGGGAGACCAGGCTACTGGGAGAATCTGGAG
ATTCGAAACTACTGAGAACTAAGAGAGAAGACAGACCAAAGCCGGATATC
CGACTGCAGCAGGAAACGCGGCTGAGGCAGGAGGAATCCAAGTTGAAAAG
TGCGCGAAAGATTAAAGTGGAGGACCCAAGAAGTCCCACTCCCAGTATCC
ATCATTCACGCTATAAGCCCTGCTCCCCGGTGGAGCACCCCACTTTGAGT
CCTCGGGTCAAATCCCTGCTCGATCGCACCGGAAACGCGCATCTCACAGA
GCTGTTCACGCGCCAGGAGATCGACATCGAGGTGCTCATCCAAATGACCC
TGGAGGACTTGGCGGCACTGGGCGTTCGCGGCGCCCGGGAGATCCGATTG
GCCATGAATATTATCCAACTGGCCAAGCAATTCTTCGCAAGCTTTCTAGA
CCAT
BO04206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gnu-RA | 723 | CG5272-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gnu-RA | 923 | CG5272-RA | 102..821 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14802482..14803175 | 736..43 | 3470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:11 has no hits.
BO04206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:06 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:57 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 91..818 | 7..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:35 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 102..821 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:06 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 91..818 | 7..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:33 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gnu-RA | 102..821 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:33 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14802479..14803173 | 45..738 | 99 | <- | Minus |
| 3L | 14803232..14803259 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:35 Download gff for
BO04206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14795579..14796273 | 45..738 | 99 | <- | Minus |
| arm_3L | 14796332..14796359 | 17..44 | 100 | | Minus |
BO04206.pep Sequence
Translation from 16 to 754
> BO04206.pep
MERYNRVYRDPASPLTPLTPLSTEAFTFEDVTPTGGVGRKGTARYGLFGM
PKNNNLTVPNSRPALSGLKRLSESTLPRRFSQKFMRTRSVFSPTSQSTLI
NGETRLLGESGDSKLLRTKREDRPKPDIRLQQETRLRQEESKLKSARKIK
VEDPRSPTPSIHHSRYKPCSPVEHPTLSPRVKSLLDRTGNAHLTELFTRQ
EIDIEVLIQMTLEDLAALGVRGAREIRLAMNIIQLAKQFFASFLDH
BO04206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gnu-PA | 240 | CG5272-PA | 1..240 | 1..240 | 1221 | 100 | Plus |
