Clone Sequence Records
BO04207.3prime Sequence
572 bp (571 high quality bases) assembled on 2005-12-01
> BO04207.3prime
ATGGTCTAGAAAGCTTGCGTAGTGGGCCACATGCGCGTGAGCGTTGTGGG
TGGCGTATCCGTAGGCGGGCACCTGATGCGCCAGGGATCCGGCGTAGGGC
ACGGCGGGAGCGGCGGCCACATGGTGGGCAATGGCTGGGGCATAGGCCGG
AGCGGCATGGACCACGGCGGGAGCGGCGTGGGCAACCACAGCGGGAGCGG
CGTGGTGCACAGTGGGGCCGGTCTTGTGGACGACGGCGTTGAAGCCATTG
TGGTCATCGGCGGTGTACTCCACGGTGCGCACCGAACCATCGGGCTCCAC
CAGAGAGTAGGATCCCTTGACGACATCACCATCACGCACTTCGTGCTGCG
ACTTCACGTCTCCGGTGTGAGAGTCAGCCACTCCGTAGTTGTAGTGGTAC
TTGGGGTAGGCATGGTAATCGATTCCCTCGTCGTGGTGACCATGGCCGGC
ATAGATGGCCGGGGCGGCGGCGTAGAGACCAGCACCATGTCCGTGGAGGA
CTCCGGCGGAGGCGGCGCTCAGGACGGCCAGGCAGATGAGGGATTTGAAG
AATGCCATGTCGACTGATAACT
BO04207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1919-PA | 543 | CG1919-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
| CG7072-PA | 1224 | CG7072-RA | 361..457 | 309..213 | 310 | 92.7 | Minus |
| CG9290-PA | 597 | CG9290-RA | 382..419 | 273..236 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..620 | 558..19 | 2700 | 100 | Minus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..620 | 558..19 | 2700 | 100 | Minus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 411..213 | 455 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 19..411 | 1965 | 100 | Plus |
| 3L | 28110227 | 3L | 1841760..1841892 | 411..543 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8337932..8338104 | 391..219 | 445 | 83.8 | Minus |
| 3L | 28110227 | 3L | 8326842..8326938 | 309..213 | 380 | 92.8 | Minus |
| 3L | 28110227 | 3L | 4211097..4211189 | 256..348 | 210 | 81.7 | Plus |
| 3L | 28110227 | 3L | 4216023..4216075 | 336..284 | 190 | 90.6 | Minus |
| 3L | 28110227 | 3L | 19520076..19520113 | 273..236 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:29:44 has no hits.
BO04207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:39 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:40 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:32 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 14..566 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:16 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 14..566 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:16 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840791..1841187 | 14..411 | 99 | <- | Plus |
| 3L | 1841761..1841892 | 412..543 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:32 Download gff for
BO04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840791..1841187 | 14..411 | 99 | <- | Plus |
| arm_3L | 1841761..1841892 | 412..543 | 100 | <- | Plus |
BO04207.5prime Sequence
572 bp (571 high quality bases) assembled on 2005-12-01
> BO04207.5prime
GAAGTTATCAGTCGACATGGCATTCTTCAAATCCCTCATCTGCCTGGCCG
TCCTGAGCGCCGCCTCCGCCGGAGTCCTCCACGGACATGGTGCTGGTCTC
TACGCCGCCGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGG
AATCGATTACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTG
ACTCTCACACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGAT
GTCGTCAAGGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCAC
CGTGGAGTACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACA
AGACCGGCCCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCC
GCTCCCGCCGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCA
CCATGTGGCCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATC
AGGTGCCCGCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCC
CACTACGCAAGCTTTCTAGACC
BO04207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1919-PA | 543 | CG1919-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
| CG7072-PA | 1224 | CG7072-RA | 361..457 | 266..362 | 310 | 92.7 | Plus |
| CG9290-PA | 597 | CG9290-RA | 382..419 | 302..339 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..620 | 17..556 | 2700 | 100 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..620 | 17..556 | 2700 | 100 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 164..362 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 556..164 | 1965 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 164..32 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 184..356 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 266..362 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 319..227 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 239..291 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 302..339 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:55:09 has no hits.
BO04207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:40 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:41 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:00 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 9..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:56 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 9..561 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:56 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840791..1841187 | 164..561 | 99 | <- | Minus |
| 3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:00 Download gff for
BO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840791..1841187 | 164..561 | 99 | <- | Minus |
| arm_3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
BO04207.complete Sequence
574 bp (574 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629662
> BO04207.complete
GAAGTTATCAGTCGACATGGCATTCTTCAAATCCCTCATCTGCCTGGCCG
TCCTGAGCGCCGCCTCCGCCGGAGTCCTCCACGGACATGGTGCTGGTCTC
TACGCCGCCGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGG
AATCGATTACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTG
ACTCTCACACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGAT
GTCGTCAAGGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCAC
CGTGGAGTACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACA
AGACCGGCCCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCC
GCTCCCGCCGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCA
CCATGTGGCCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATC
AGGTGCCCGCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCC
CACTACGCAAGCTTTCTAGACCAT
BO04207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 543 | CG1919-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
| Cpr62Bc-RA | 543 | CG1919-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
| CG34461-RB | 417 | CG34461-PB | 142..340 | 164..362 | 455 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..620 | 17..556 | 2700 | 100 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..620 | 17..556 | 2700 | 100 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 164..362 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 556..164 | 1965 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 164..32 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 184..356 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 266..362 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 319..227 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 239..291 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 302..339 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:08:12 has no hits.
BO04207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:07 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:59 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 71..620 | 9..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:14 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 81..620 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:07 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 71..620 | 9..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:42 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 81..620 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:42 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840793..1841187 | 164..558 | 99 | <- | Minus |
| 3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:14 Download gff for
BO04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840793..1841187 | 164..558 | 99 | <- | Minus |
| arm_3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
BO04207.pep Sequence
Translation from 16 to 574
> BO04207.pep
MAFFKSLICLAVLSAASAGVLHGHGAGLYAAAPAIYAGHGHHDEGIDYHA
YPKYHYNYGVADSHTGDVKSQHEVRDGDVVKGSYSLVEPDGSVRTVEYTA
DDHNGFNAVVHKTGPTVHHAAPAVVAHAAPAVVHAAPAYAPAIAHHVAAA
PAVPYAGSLAHQVPAYGYATHNAHAHVAHYASFLDH
BO04207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-PB | 180 | CG1919-PB | 1..180 | 1..180 | 972 | 100 | Plus |
| Cpr62Bc-PA | 180 | CG1919-PA | 1..180 | 1..180 | 972 | 100 | Plus |
| CG34461-PB | 138 | CG34461-PB | 2..138 | 5..146 | 359 | 54.7 | Plus |
| CG34461-PA | 138 | CG34461-PA | 2..138 | 5..146 | 359 | 54.7 | Plus |
| Cpr62Bb-PC | 194 | CG13935-PC | 3..188 | 6..182 | 358 | 44.3 | Plus |
