Clone BO04208 Report

Search the DGRC for BO04208

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptcl-RA
Protein status:BO04208.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO04208.3prime Sequence

410 bp (409 high quality bases) assembled on 2005-12-01

> BO04208.3prime
ATGGTCTAGAAAGCTTGCATCCTCATCCTCGAACATCATCTCGACGAGAT
CCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCGC
AACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGGG
GCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACGA
AGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTCC
GCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGCC
ACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATCT
TTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTCG
ACTGATAACT

BO04208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..578 397..19 1895 100 Minus
cl-RB 689 CG11024-RB 215..593 397..19 1895 100 Minus
cl-RA 615 CG11024-RA 141..519 397..19 1895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521286 169..19 755 100 Minus
2L 23513712 2L 5520400..5520545 397..252 730 100 Minus
2L 23513712 2L 5520618..5520700 252..170 415 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:46 has no hits.

BO04208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:56:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:42 Download gff for BO04208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 15..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:58 Download gff for BO04208.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 14..404 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:34 Download gff for BO04208.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 14..404 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:34 Download gff for BO04208.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520619..5520700 170..251 100 -> Minus
2L 5520391..5520545 252..404 97 -> Minus
2L 5521136..5521290 14..169 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:58 Download gff for BO04208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520391..5520545 252..404 97 -> Minus
arm_2L 5520619..5520700 170..251 100 -> Minus
arm_2L 5521136..5521290 14..169 98   Minus

BO04208.5prime Sequence

410 bp (409 high quality bases) assembled on 2005-12-01

> BO04208.5prime
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGC
TTTCTAGACC

BO04208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..578 16..394 1895 100 Plus
cl-RB 689 CG11024-RB 215..593 16..394 1895 100 Plus
cl-RA 615 CG11024-RA 141..519 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521286 244..394 755 100 Plus
2L 23513712 2L 5520400..5520545 16..161 730 100 Plus
2L 23513712 2L 5520618..5520700 161..243 415 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:13:47 has no hits.

BO04208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:56:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:44 Download gff for BO04208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:26 Download gff for BO04208.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 9..399 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:33 Download gff for BO04208.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 9..399 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:33 Download gff for BO04208.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520391..5520545 9..161 97 -> Plus
2L 5520619..5520700 162..243 100 -> Plus
2L 5521136..5521290 244..399 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:26 Download gff for BO04208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5521136..5521290 244..399 98   Plus
arm_2L 5520391..5520545 9..161 97 -> Plus
arm_2L 5520619..5520700 162..243 100 -> Plus

BO04208.complete Sequence

412 bp (412 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629663

> BO04208.complete
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGC
TTTCTAGACCAT

BO04208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 381 CG11024-PC 1..378 17..394 1890 100 Plus
cl-RB 381 CG11024-PB 1..378 17..394 1890 100 Plus
cl-RA 381 CG11024-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..578 16..394 1895 100 Plus
cl-RB 689 CG11024-RB 215..593 16..394 1895 100 Plus
cl-RA 615 CG11024-RA 141..519 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521286 244..394 755 100 Plus
2L 23513712 2L 5520400..5520545 16..161 730 100 Plus
2L 23513712 2L 5520618..5520700 161..243 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:07 has no hits.

BO04208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:16 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 1..381 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:43 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..525 9..399 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:27 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 142..519 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:16 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..525 9..399 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:04 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 142..519 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:04 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5520401..5520545 17..161 100 -> Plus
2L 5520619..5520700 162..243 100 -> Plus
2L 5521136..5521286 244..396 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:27 Download gff for BO04208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520401..5520545 17..161 100 -> Plus
arm_2L 5520619..5520700 162..243 100 -> Plus
arm_2L 5521136..5521286 244..396 98   Plus

BO04208.pep Sequence

Translation from 16 to 412

> BO04208.pep
MVVTHNVKGYDEFTKKMEELENGDEPVHVLFSGGKDEKGESWCPYCVKAE
PVIHDALKKAPGNSHFVHVDVGERAYWKDLNCPFRKDPNTHLIFLPTLLR
WKRPQRLDGERCSNQDLVEMMFEDEDASFLDH

BO04208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
cl-PC 126 CG11024-PC 1..126 1..126 704 100 Plus
cl-PB 126 CG11024-PB 1..126 1..126 704 100 Plus
cl-PA 126 CG11024-PA 1..126 1..126 704 100 Plus
CG3939-PB 135 CG3939-PB 8..126 8..126 224 39.2 Plus
CG3939-PA 135 CG3939-PA 8..126 8..126 224 39.2 Plus