Clone Sequence Records
BO04208.3prime Sequence
410 bp (409 high quality bases) assembled on 2005-12-01
> BO04208.3prime
ATGGTCTAGAAAGCTTGCATCCTCATCCTCGAACATCATCTCGACGAGAT
CCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCGC
AACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGGG
GCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACGA
AGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTCC
GCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGCC
ACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATCT
TTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTCG
ACTGATAACT
BO04208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..578 | 397..19 | 1895 | 100 | Minus |
cl-RB | 689 | CG11024-RB | 215..593 | 397..19 | 1895 | 100 | Minus |
cl-RA | 615 | CG11024-RA | 141..519 | 397..19 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521286 | 169..19 | 755 | 100 | Minus |
2L | 23513712 | 2L | 5520400..5520545 | 397..252 | 730 | 100 | Minus |
2L | 23513712 | 2L | 5520618..5520700 | 252..170 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:46 has no hits.
BO04208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:56:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:42 Download gff for
BO04208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 15..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:58 Download gff for
BO04208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 14..404 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:34 Download gff for
BO04208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 14..404 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:34 Download gff for
BO04208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520619..5520700 | 170..251 | 100 | -> | Minus |
2L | 5520391..5520545 | 252..404 | 97 | -> | Minus |
2L | 5521136..5521290 | 14..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:58 Download gff for
BO04208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520391..5520545 | 252..404 | 97 | -> | Minus |
arm_2L | 5520619..5520700 | 170..251 | 100 | -> | Minus |
arm_2L | 5521136..5521290 | 14..169 | 98 | | Minus |
BO04208.5prime Sequence
410 bp (409 high quality bases) assembled on 2005-12-01
> BO04208.5prime
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGC
TTTCTAGACC
BO04208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..578 | 16..394 | 1895 | 100 | Plus |
cl-RB | 689 | CG11024-RB | 215..593 | 16..394 | 1895 | 100 | Plus |
cl-RA | 615 | CG11024-RA | 141..519 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521286 | 244..394 | 755 | 100 | Plus |
2L | 23513712 | 2L | 5520400..5520545 | 16..161 | 730 | 100 | Plus |
2L | 23513712 | 2L | 5520618..5520700 | 161..243 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:13:47 has no hits.
BO04208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:56:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:44 Download gff for
BO04208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:26 Download gff for
BO04208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 9..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:33 Download gff for
BO04208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 9..399 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:33 Download gff for
BO04208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520391..5520545 | 9..161 | 97 | -> | Plus |
2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
2L | 5521136..5521290 | 244..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:26 Download gff for
BO04208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5521136..5521290 | 244..399 | 98 | | Plus |
arm_2L | 5520391..5520545 | 9..161 | 97 | -> | Plus |
arm_2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
BO04208.complete Sequence
412 bp (412 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629663
> BO04208.complete
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGC
TTTCTAGACCAT
BO04208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 381 | CG11024-PC | 1..378 | 17..394 | 1890 | 100 | Plus |
cl-RB | 381 | CG11024-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
cl-RA | 381 | CG11024-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..578 | 16..394 | 1895 | 100 | Plus |
cl-RB | 689 | CG11024-RB | 215..593 | 16..394 | 1895 | 100 | Plus |
cl-RA | 615 | CG11024-RA | 141..519 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521286 | 244..394 | 755 | 100 | Plus |
2L | 23513712 | 2L | 5520400..5520545 | 16..161 | 730 | 100 | Plus |
2L | 23513712 | 2L | 5520618..5520700 | 161..243 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:07 has no hits.
BO04208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:16 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 1..381 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:43 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..525 | 9..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:27 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 142..519 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:16 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..525 | 9..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:04 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 142..519 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:04 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520401..5520545 | 17..161 | 100 | -> | Plus |
2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
2L | 5521136..5521286 | 244..396 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:27 Download gff for
BO04208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520401..5520545 | 17..161 | 100 | -> | Plus |
arm_2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
arm_2L | 5521136..5521286 | 244..396 | 98 | | Plus |
BO04208.pep Sequence
Translation from 16 to 412
> BO04208.pep
MVVTHNVKGYDEFTKKMEELENGDEPVHVLFSGGKDEKGESWCPYCVKAE
PVIHDALKKAPGNSHFVHVDVGERAYWKDLNCPFRKDPNTHLIFLPTLLR
WKRPQRLDGERCSNQDLVEMMFEDEDASFLDH
BO04208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-PC | 126 | CG11024-PC | 1..126 | 1..126 | 704 | 100 | Plus |
cl-PB | 126 | CG11024-PB | 1..126 | 1..126 | 704 | 100 | Plus |
cl-PA | 126 | CG11024-PA | 1..126 | 1..126 | 704 | 100 | Plus |
CG3939-PB | 135 | CG3939-PB | 8..126 | 8..126 | 224 | 39.2 | Plus |
CG3939-PA | 135 | CG3939-PA | 8..126 | 8..126 | 224 | 39.2 | Plus |