Clone BO04209 Report

Search the DGRC for BO04209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG10265-RA
Protein status:BO04209.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO04209.3prime Sequence

827 bp (825 high quality bases) assembled on 2005-12-01

> BO04209.3prime
ATGGTCTAGAAAGCTTGCCGATTTTCTTACTTTGGTGCATCTGATGCCCT
TGGATTGCAGTTTTCTCATGATGTCCAAGGTCTCTTGATTTTTGGTTGGA
TTTAGCTCAGTCGTGGCATTCAATTGGGTACTTGCTCGCTTCACCTCCAC
ACCGCATGCTCTGAGTTTGTTTAGGATTTTCTGGGTGCCATCCAATGGAG
GAGTTGATTTGCTTGTTATGGTAGGAACTGGTTTCTCGGGCGTCTTGGGA
GGTTCTGGTACTTCAGATATCCTTGAAGAGACTGGTATAATAAGCTTCGA
TGCAGGAGAAAATTTCATGGGTACCAATTGAGATGTTGACTGCGTTGTCC
CGGTAGCACGAGATTGCAATGACCTTACAGGATGTACAGGAGCTGGTGGT
GCCTCTGGAATCCTTTCCTTTTTCTCCGTGTCCTGCAATCGCTTCAGATC
TTCCAGCACAGTGGGCACCAGAATGATGGCCTTTTTCATCTTTACTGCTG
GCGGTTGAGGGGAAGTCAAGCAGGCACGGGATCTGCGCTGCTGCTGGGAG
GTCAGAATGGTACGTCGGGTGGTGGGAGGGCTACGCGGACGTTTCGCAGG
CACCCCTTCCGGTTCCTGAGGCTCCTTGGCGAGCGGCACTACATCCTCCT
TTACTATATTTTCCTTGGAATTTGTCTTTGGTATGGTCTGCACGGTGGGC
TTGGGATTGGTGTACCAGCGTGGATCCTCCAGCTCTGCCTCCCAATCGAT
GGCCGTGTTGGTGTTCTTCTTAACCGCCTCCAGGTCGTAGATGTGAATCT
CCTGTCTGCCATTCACCAGTCTCGTTT

BO04209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 1023 CG10265-RA 212..1020 827..19 4045 100 Minus
CG10265-PB 1023 CG10265-RB 212..1020 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 296..1104 827..19 4045 100 Minus
CG10265-RC 1368 CG10265-RC 296..799 827..324 2520 100 Minus
CG10265-RC 1368 CG10265-RC 798..1051 272..19 1270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992649..14993430 19..800 3910 100 Plus
Blast to na_te.dros performed 2015-02-12 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 249..200 114 71.7 Minus

BO04209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:42 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 212..1023 18..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:45 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 212..1023 18..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:32 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 296..1109 11..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:29 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 296..1109 11..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:29 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14992644..14993428 11..798 99 <- Plus
2R 14993512..14993540 799..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:32 Download gff for BO04209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880149..10880933 11..798 99 <- Plus
arm_2R 10881017..10881045 799..827 100   Plus

BO04209.5prime Sequence

898 bp (806 high quality bases) assembled on 2005-12-01

> BO04209.5prime
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAAAAATCCTAAACAAACTCAGAGCAT

BO04209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 1023 CG10265-RA 1..857 17..873 4285 100 Plus
CG10265-PB 1023 CG10265-RB 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 85..967 17..898 4390 99.9 Plus
CG10265-RC 1368 CG10265-RC 85..799 17..731 3575 100 Plus
CG10265-RC 1368 CG10265-RC 798..914 783..898 560 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992786..14993430 898..255 3175 99.8 Minus
2R 25286936 2R 14993512..14993751 256..17 1200 100 Minus
Blast to na_te.dros performed 2015-02-10 16:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 806..855 114 71.7 Plus

BO04209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:43 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 1..883 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:46 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 1..883 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:29 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..967 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:36 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..967 17..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:36 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14992786..14993428 257..898 99 <- Minus
2R 14993512..14993751 17..256 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:29 Download gff for BO04209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880291..10880933 257..898 99 <- Minus
arm_2R 10881017..10881256 17..256 100   Minus

BO04209.complete Sequence

1054 bp (1054 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629664

> BO04209.complete
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATG
CGGTGTGGAGGTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGC
TAAATCCAACCAAAAATCAAGAGACCTTGGACATCATGAGAAAACTGCAA
TCCAAGGGCATCAGATGCACCAAAGTAAGAAAATCGGCAAGCTTTCTAGA
CCAT

BO04209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1023 CG10265-PA 1..1020 17..1036 5100 100 Plus
CG10265-RC 723 CG10265-PC 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 85..1104 17..1036 5100 100 Plus
CG10265-RC 1368 CG10265-RC 85..799 17..731 3575 100 Plus
CG10265-RC 1368 CG10265-RC 798..1051 783..1036 1270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992649..14993430 1036..255 3910 100 Minus
2R 25286936 2R 14993512..14993751 256..17 1200 100 Minus
Blast to na_te.dros performed 2014-11-27 10:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 806..855 114 71.7 Plus

BO04209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:08 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 1..1023 17..1037 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:00 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 744..1768 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:38 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..1104 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:08 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 744..1768 17..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:48 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..1104 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:48 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992647..14993428 257..1038 99 <- Minus
2R 14993512..14993751 17..256 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:38 Download gff for BO04209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880152..10880933 257..1038 99 <- Minus
arm_2R 10881017..10881256 17..256 100   Minus

BO04209.pep Sequence

Translation from 16 to 1054

> BO04209.pep
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKSASFLDH

BO04209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 340 CG10265-PA 1..340 1..340 1758 100 Plus
CG10265-PC 240 CG10265-PC 1..238 1..238 1242 100 Plus