Clone Sequence Records
BO04209.3prime Sequence
827 bp (825 high quality bases) assembled on 2005-12-01
> BO04209.3prime
ATGGTCTAGAAAGCTTGCCGATTTTCTTACTTTGGTGCATCTGATGCCCT
TGGATTGCAGTTTTCTCATGATGTCCAAGGTCTCTTGATTTTTGGTTGGA
TTTAGCTCAGTCGTGGCATTCAATTGGGTACTTGCTCGCTTCACCTCCAC
ACCGCATGCTCTGAGTTTGTTTAGGATTTTCTGGGTGCCATCCAATGGAG
GAGTTGATTTGCTTGTTATGGTAGGAACTGGTTTCTCGGGCGTCTTGGGA
GGTTCTGGTACTTCAGATATCCTTGAAGAGACTGGTATAATAAGCTTCGA
TGCAGGAGAAAATTTCATGGGTACCAATTGAGATGTTGACTGCGTTGTCC
CGGTAGCACGAGATTGCAATGACCTTACAGGATGTACAGGAGCTGGTGGT
GCCTCTGGAATCCTTTCCTTTTTCTCCGTGTCCTGCAATCGCTTCAGATC
TTCCAGCACAGTGGGCACCAGAATGATGGCCTTTTTCATCTTTACTGCTG
GCGGTTGAGGGGAAGTCAAGCAGGCACGGGATCTGCGCTGCTGCTGGGAG
GTCAGAATGGTACGTCGGGTGGTGGGAGGGCTACGCGGACGTTTCGCAGG
CACCCCTTCCGGTTCCTGAGGCTCCTTGGCGAGCGGCACTACATCCTCCT
TTACTATATTTTCCTTGGAATTTGTCTTTGGTATGGTCTGCACGGTGGGC
TTGGGATTGGTGTACCAGCGTGGATCCTCCAGCTCTGCCTCCCAATCGAT
GGCCGTGTTGGTGTTCTTCTTAACCGCCTCCAGGTCGTAGATGTGAATCT
CCTGTCTGCCATTCACCAGTCTCGTTT
BO04209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 1023 | CG10265-RA | 212..1020 | 827..19 | 4045 | 100 | Minus |
CG10265-PB | 1023 | CG10265-RB | 212..1020 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 296..1104 | 827..19 | 4045 | 100 | Minus |
CG10265-RC | 1368 | CG10265-RC | 296..799 | 827..324 | 2520 | 100 | Minus |
CG10265-RC | 1368 | CG10265-RC | 798..1051 | 272..19 | 1270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992649..14993430 | 19..800 | 3910 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 249..200 | 114 | 71.7 | Minus |
BO04209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:42 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 212..1023 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:45 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 212..1023 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:32 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 296..1109 | 11..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:29 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 296..1109 | 11..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:29 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992644..14993428 | 11..798 | 99 | <- | Plus |
2R | 14993512..14993540 | 799..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:32 Download gff for
BO04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880149..10880933 | 11..798 | 99 | <- | Plus |
arm_2R | 10881017..10881045 | 799..827 | 100 | | Plus |
BO04209.5prime Sequence
898 bp (806 high quality bases) assembled on 2005-12-01
> BO04209.5prime
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAAAAATCCTAAACAAACTCAGAGCAT
BO04209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 1023 | CG10265-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
CG10265-PB | 1023 | CG10265-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 85..967 | 17..898 | 4390 | 99.9 | Plus |
CG10265-RC | 1368 | CG10265-RC | 85..799 | 17..731 | 3575 | 100 | Plus |
CG10265-RC | 1368 | CG10265-RC | 798..914 | 783..898 | 560 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992786..14993430 | 898..255 | 3175 | 99.8 | Minus |
2R | 25286936 | 2R | 14993512..14993751 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 806..855 | 114 | 71.7 | Plus |
BO04209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:43 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:46 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:29 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..967 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:36 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..967 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:36 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992786..14993428 | 257..898 | 99 | <- | Minus |
2R | 14993512..14993751 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:29 Download gff for
BO04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880291..10880933 | 257..898 | 99 | <- | Minus |
arm_2R | 10881017..10881256 | 17..256 | 100 | | Minus |
BO04209.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629664
> BO04209.complete
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATG
CGGTGTGGAGGTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGC
TAAATCCAACCAAAAATCAAGAGACCTTGGACATCATGAGAAAACTGCAA
TCCAAGGGCATCAGATGCACCAAAGTAAGAAAATCGGCAAGCTTTCTAGA
CCAT
BO04209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1023 | CG10265-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG10265-RC | 723 | CG10265-PC | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 85..1104 | 17..1036 | 5100 | 100 | Plus |
CG10265-RC | 1368 | CG10265-RC | 85..799 | 17..731 | 3575 | 100 | Plus |
CG10265-RC | 1368 | CG10265-RC | 798..1051 | 783..1036 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992649..14993430 | 1036..255 | 3910 | 100 | Minus |
2R | 25286936 | 2R | 14993512..14993751 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 806..855 | 114 | 71.7 | Plus |
BO04209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:08 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 1..1023 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:00 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 744..1768 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:38 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..1104 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:08 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 744..1768 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:48 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..1104 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:48 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992647..14993428 | 257..1038 | 99 | <- | Minus |
2R | 14993512..14993751 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:38 Download gff for
BO04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880152..10880933 | 257..1038 | 99 | <- | Minus |
arm_2R | 10881017..10881256 | 17..256 | 100 | | Minus |
BO04209.pep Sequence
Translation from 16 to 1054
> BO04209.pep
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKSASFLDH
BO04209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 340 | CG10265-PA | 1..340 | 1..340 | 1758 | 100 | Plus |
CG10265-PC | 240 | CG10265-PC | 1..238 | 1..238 | 1242 | 100 | Plus |