Clone BO04210 Report

Search the DGRC for BO04210

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG5903-RA
Protein status:BO04210.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO04210.3prime Sequence

710 bp (709 high quality bases) assembled on 2005-12-01

> BO04210.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTTTGGGGAAGATTAGATCCTTTGCCT
CATCGTACAGGTCACTGGCCATGTACTTAAGGTCCTCCAGCGAGGTAGGG
AAGGGCACTACGGGAACATCCTCTCCTGGCTTTACGCCCTTGATGAAGTT
GTAGGCCACGGCGAAGATCTTACGGCCCTCGTAGAGTACCACGCGGCAGT
TTTCTTCCGCCTGGCGGGGGTAGCACATGGAGGCGACTGCACCTGCTCCG
ATGCCCGAATACAACACCTTCTTTATGAAGCCTCCACGGGCGGCGAAGAT
GAAACCAGCCAGACCGCCCACCACAATGGCTCCGCTGCGGTGCAGGGAGT
TCTGGGGCTCGTTCAGCATGTCGATGGTGGACTGGGTGTGTGCCTTAGCG
GTTTCCACGTAATGGCCGACAATGCCGGCTTGATCGGCCACTGCCTTATA
TCCAGACTGCACCTCCTCGCGCACATAGCGGACTCCGGCCTCCAGGTTCT
TGTGCAGCACAGAGTCTTGTGGTGGATGCCGTTCTGGCTTGGGTTCTGTC
TTGCGCAAGCTGCCGTAGATGGGCAGCTCGCTGGGCCGGCACACCAGGCT
GCAGTCCGCCGCACTGGAGGCTGGTTTCTGGGGCTCGGGAGCCGCTTTAA
CGGCAACCGCCGCCATGATTCCCATCGTTGCCGTTTTGCGCAGCATGTCG
ACTGATAACT

BO04210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PA 681 CG5903-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..959 701..19 3400 99.9 Minus
CG5903-RB 995 CG5903-RB 164..846 701..19 3400 99.9 Minus
CG5903-RA 1487 CG5903-RA 277..959 701..19 3400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145834..16146359 19..544 2630 100 Plus
3R 32079331 3R 16146423..16146579 545..701 770 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:40:54 has no hits.

BO04210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:44 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:48 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:00 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 19..701 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:55 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 19..701 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:55 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16145834..16146359 19..544 100 <- Plus
3R 16146423..16146579 545..701 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:00 Download gff for BO04210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971556..11972081 19..544 100 <- Plus
arm_3R 11972145..11972301 545..701 99   Plus

BO04210.5prime Sequence

710 bp (709 high quality bases) assembled on 2005-12-01

> BO04210.5prime
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGC
TTTCTAGACC

BO04210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PA 681 CG5903-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..959 12..694 3400 99.9 Plus
CG5903-RB 995 CG5903-RB 164..846 12..694 3400 99.9 Plus
CG5903-RA 1487 CG5903-RA 277..959 12..694 3400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145834..16146359 694..169 2630 100 Minus
3R 32079331 3R 16146423..16146579 168..12 770 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 05:29:49 has no hits.

BO04210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:45 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:49 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:13 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 12..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:27 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 12..694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:27 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16145834..16146359 169..694 100 <- Minus
3R 16146423..16146579 12..168 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:13 Download gff for BO04210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971556..11972081 169..694 100 <- Minus
arm_3R 11972145..11972301 12..168 99   Minus

BO04210.complete Sequence

712 bp (712 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629665

> BO04210.complete
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGC
TTTCTAGACCAT

BO04210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 681 CG5903-PC 1..678 17..694 3390 100 Plus
CG5903-RB 681 CG5903-PB 1..678 17..694 3390 100 Plus
CG5903-RA 681 CG5903-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..959 12..694 3400 99.9 Plus
CG5903-RB 995 CG5903-RB 164..846 12..694 3400 99.9 Plus
CG5903-RA 1487 CG5903-RA 277..959 12..694 3400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145834..16146359 694..169 2630 100 Minus
3R 32079331 3R 16146423..16146579 168..12 770 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:54:31 has no hits.

BO04210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:09 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:02 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 12..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:51 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 282..959 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:10 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..959 12..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:30 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 282..959 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:30 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16145832..16146359 169..696 99 <- Minus
3R 16146423..16146574 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:51 Download gff for BO04210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971554..11972081 169..696 99 <- Minus
arm_3R 11972145..11972296 17..168 100   Minus

BO04210.pep Sequence

Translation from 16 to 712

> BO04210.pep
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKKASFLDH

BO04210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PC 226 CG5903-PC 1..226 1..226 1164 100 Plus
CG5903-PB 226 CG5903-PB 1..226 1..226 1164 100 Plus
CG5903-PA 226 CG5903-PA 1..226 1..226 1164 100 Plus