Clone Sequence Records
BO04210.3prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-01
> BO04210.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTTTGGGGAAGATTAGATCCTTTGCCT
CATCGTACAGGTCACTGGCCATGTACTTAAGGTCCTCCAGCGAGGTAGGG
AAGGGCACTACGGGAACATCCTCTCCTGGCTTTACGCCCTTGATGAAGTT
GTAGGCCACGGCGAAGATCTTACGGCCCTCGTAGAGTACCACGCGGCAGT
TTTCTTCCGCCTGGCGGGGGTAGCACATGGAGGCGACTGCACCTGCTCCG
ATGCCCGAATACAACACCTTCTTTATGAAGCCTCCACGGGCGGCGAAGAT
GAAACCAGCCAGACCGCCCACCACAATGGCTCCGCTGCGGTGCAGGGAGT
TCTGGGGCTCGTTCAGCATGTCGATGGTGGACTGGGTGTGTGCCTTAGCG
GTTTCCACGTAATGGCCGACAATGCCGGCTTGATCGGCCACTGCCTTATA
TCCAGACTGCACCTCCTCGCGCACATAGCGGACTCCGGCCTCCAGGTTCT
TGTGCAGCACAGAGTCTTGTGGTGGATGCCGTTCTGGCTTGGGTTCTGTC
TTGCGCAAGCTGCCGTAGATGGGCAGCTCGCTGGGCCGGCACACCAGGCT
GCAGTCCGCCGCACTGGAGGCTGGTTTCTGGGGCTCGGGAGCCGCTTTAA
CGGCAACCGCCGCCATGATTCCCATCGTTGCCGTTTTGCGCAGCATGTCG
ACTGATAACT
BO04210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PA | 681 | CG5903-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..959 | 701..19 | 3400 | 99.9 | Minus |
CG5903-RB | 995 | CG5903-RB | 164..846 | 701..19 | 3400 | 99.9 | Minus |
CG5903-RA | 1487 | CG5903-RA | 277..959 | 701..19 | 3400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145834..16146359 | 19..544 | 2630 | 100 | Plus |
3R | 32079331 | 3R | 16146423..16146579 | 545..701 | 770 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:40:54 has no hits.
BO04210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:44 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:48 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:00 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 19..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:55 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 19..701 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:55 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16145834..16146359 | 19..544 | 100 | <- | Plus |
3R | 16146423..16146579 | 545..701 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:00 Download gff for
BO04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971556..11972081 | 19..544 | 100 | <- | Plus |
arm_3R | 11972145..11972301 | 545..701 | 99 | | Plus |
BO04210.5prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-01
> BO04210.5prime
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGC
TTTCTAGACC
BO04210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PA | 681 | CG5903-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..959 | 12..694 | 3400 | 99.9 | Plus |
CG5903-RB | 995 | CG5903-RB | 164..846 | 12..694 | 3400 | 99.9 | Plus |
CG5903-RA | 1487 | CG5903-RA | 277..959 | 12..694 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145834..16146359 | 694..169 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 16146423..16146579 | 168..12 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:29:49 has no hits.
BO04210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:45 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:49 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:13 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 12..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:27 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 12..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:27 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16145834..16146359 | 169..694 | 100 | <- | Minus |
3R | 16146423..16146579 | 12..168 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:13 Download gff for
BO04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971556..11972081 | 169..694 | 100 | <- | Minus |
arm_3R | 11972145..11972301 | 12..168 | 99 | | Minus |
BO04210.complete Sequence
712 bp (712 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629665
> BO04210.complete
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGC
TTTCTAGACCAT
BO04210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 681 | CG5903-PC | 1..678 | 17..694 | 3390 | 100 | Plus |
CG5903-RB | 681 | CG5903-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
CG5903-RA | 681 | CG5903-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..959 | 12..694 | 3400 | 99.9 | Plus |
CG5903-RB | 995 | CG5903-RB | 164..846 | 12..694 | 3400 | 99.9 | Plus |
CG5903-RA | 1487 | CG5903-RA | 277..959 | 12..694 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145834..16146359 | 694..169 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 16146423..16146579 | 168..12 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:54:31 has no hits.
BO04210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:09 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:02 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 12..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:51 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 282..959 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:10 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..959 | 12..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:30 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 282..959 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:30 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16145832..16146359 | 169..696 | 99 | <- | Minus |
3R | 16146423..16146574 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:51 Download gff for
BO04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971554..11972081 | 169..696 | 99 | <- | Minus |
arm_3R | 11972145..11972296 | 17..168 | 100 | | Minus |
BO04210.pep Sequence
Translation from 16 to 712
> BO04210.pep
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKKASFLDH
BO04210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PC | 226 | CG5903-PC | 1..226 | 1..226 | 1164 | 100 | Plus |
CG5903-PB | 226 | CG5903-PB | 1..226 | 1..226 | 1164 | 100 | Plus |
CG5903-PA | 226 | CG5903-PA | 1..226 | 1..226 | 1164 | 100 | Plus |