Clone Sequence Records
BO04212.3prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-01
> BO04212.3prime
ATGGTCTAGAAAGCTTGCGTGGGCGGCCTCCTCCTTCATGCCACTGCCCA
CTGGTCCGTGGCGACGCTCCCAGATCAGACGATGCTTCTGCTTCATGTAC
GCGGTCTTGGCATTGGCATAACCTCCCAAGTCGCCATACTTGATGAACCA
GTTCTCGGTGGCCTTCTCGTACTGATCCATCAGCGGCCTGCACTTGACCA
TGTGATCGGGTGCCTCGTAGAGGGTGCAGTCCTCGAAGCGCTGGCGCAGA
ATGTTGACAATCTCGTTGTCGACCATGCGATCCCGGCGGAACTGCTGATC
GGCCTCGAAACGGCAGACGGCATCGTCCGTGTAGCACTGGTCGATCGTCG
GAACGCGGCGGAAGCGCTGGTGGTACCAATTCTGCTTCTGCTGGTTCGGC
TCCACAATGCTCTCACGGAACCAAGTTATGGGTCCATCGATGACATTCAG
CACCGACTCGGCAAAACTGGCCATCGGACTGCGCGGTTCCGGCATGTCGA
CTGATAACT
BO04212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8844-PA | 480 | Pdsw-RA | 1..476 | 495..20 | 2280 | 99.1 | Minus |
CG8844-PB | 480 | Pdsw-RB | 1..476 | 495..20 | 2280 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..654 | 495..20 | 2320 | 99.2 | Minus |
Pdsw-RA | 651 | CG8844-RA | 92..567 | 495..20 | 2320 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 414..138 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 3467133..3467250 | 137..20 | 530 | 96.6 | Minus |
2L | 23513712 | 2L | 3466335..3466416 | 495..414 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:18:47 has no hits.
BO04212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:48 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-PA | 1..480 | 15..495 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:54 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8844-PB | 1..480 | 15..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:52 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 12..503 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:54 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 12..503 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:54 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466329..3466416 | 414..503 | 95 | -> | Minus |
2L | 3466787..3467062 | 138..413 | 100 | -> | Minus |
2L | 3467133..3467255 | 14..137 | 93 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:52 Download gff for
BO04212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466329..3466416 | 414..503 | 95 | -> | Minus |
arm_2L | 3466787..3467062 | 138..413 | 100 | -> | Minus |
arm_2L | 3467133..3467255 | 14..137 | 93 | -> | Minus |
BO04212.5prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-01
> BO04212.5prime
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCT
TTCTAGACC
BO04212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8844-PA | 480 | Pdsw-RA | 1..476 | 17..492 | 2280 | 99.1 | Plus |
CG8844-PB | 480 | Pdsw-RB | 1..476 | 17..492 | 2280 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..654 | 17..492 | 2320 | 99.2 | Plus |
Pdsw-RA | 651 | CG8844-RA | 92..567 | 17..492 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 98..374 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 3467133..3467250 | 375..492 | 530 | 96.6 | Plus |
2L | 23513712 | 2L | 3466335..3466416 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:15:59 has no hits.
BO04212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:49 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-PA | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:55 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8844-PB | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:29 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 9..500 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:55 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 9..500 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:55 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466329..3466416 | 9..98 | 95 | -> | Plus |
2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
2L | 3467133..3467255 | 375..498 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:29 Download gff for
BO04212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466329..3466416 | 9..98 | 95 | -> | Plus |
arm_2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
arm_2L | 3467133..3467255 | 375..498 | 93 | -> | Plus |
BO04212.complete Sequence
511 bp (511 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629666
> BO04212.complete
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCT
TTCTAGACCAT
BO04212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 480 | CG8844-PB | 1..476 | 17..492 | 2320 | 99.2 | Plus |
Pdsw-RA | 480 | CG8844-PA | 1..476 | 17..492 | 2320 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..654 | 17..492 | 2320 | 99.2 | Plus |
Pdsw-RA | 651 | CG8844-RA | 92..567 | 17..492 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 98..374 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 3467133..3467250 | 375..492 | 530 | 96.6 | Plus |
2L | 23513712 | 2L | 3466335..3466416 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:22 has no hits.
BO04212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:23 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:43 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 88..576 | 9..500 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:55 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 92..567 | 17..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:23 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 88..576 | 9..500 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:11 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 92..567 | 17..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:11 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466335..3466416 | 17..98 | 100 | -> | Plus |
2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
2L | 3467133..3467250 | 375..495 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:55 Download gff for
BO04212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466335..3466416 | 17..98 | 100 | -> | Plus |
arm_2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
arm_2L | 3467133..3467250 | 375..495 | 94 | | Plus |
BO04212.pep Sequence
Translation from 16 to 511
> BO04212.pep
MPEPRSPMASFAESVLNVIDGPITWFRESIVEPNQQKQNWYHQRFRRVPT
IDQCYTDDAVCRFEADQQFRRDRMVDNEIVNILRQRFEDCTLYEAPDHMV
KCRPLMDQYEKATENWFIKYGDLGGYANAKTAYMKQKHRLIWERRHGPVG
SGMKEEAAHASFLDH
BO04212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-PB | 159 | CG8844-PB | 1..159 | 1..159 | 875 | 100 | Plus |
Pdsw-PA | 159 | CG8844-PA | 1..159 | 1..159 | 875 | 100 | Plus |