Clone BO04212 Report

Search the DGRC for BO04212

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPdsw-RA
Protein status:BO04212.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO04212.3prime Sequence

509 bp (508 high quality bases) assembled on 2005-12-01

> BO04212.3prime
ATGGTCTAGAAAGCTTGCGTGGGCGGCCTCCTCCTTCATGCCACTGCCCA
CTGGTCCGTGGCGACGCTCCCAGATCAGACGATGCTTCTGCTTCATGTAC
GCGGTCTTGGCATTGGCATAACCTCCCAAGTCGCCATACTTGATGAACCA
GTTCTCGGTGGCCTTCTCGTACTGATCCATCAGCGGCCTGCACTTGACCA
TGTGATCGGGTGCCTCGTAGAGGGTGCAGTCCTCGAAGCGCTGGCGCAGA
ATGTTGACAATCTCGTTGTCGACCATGCGATCCCGGCGGAACTGCTGATC
GGCCTCGAAACGGCAGACGGCATCGTCCGTGTAGCACTGGTCGATCGTCG
GAACGCGGCGGAAGCGCTGGTGGTACCAATTCTGCTTCTGCTGGTTCGGC
TCCACAATGCTCTCACGGAACCAAGTTATGGGTCCATCGATGACATTCAG
CACCGACTCGGCAAAACTGGCCATCGGACTGCGCGGTTCCGGCATGTCGA
CTGATAACT

BO04212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8844-PA 480 Pdsw-RA 1..476 495..20 2280 99.1 Minus
CG8844-PB 480 Pdsw-RB 1..476 495..20 2280 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..654 495..20 2320 99.2 Minus
Pdsw-RA 651 CG8844-RA 92..567 495..20 2320 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 414..138 1385 100 Minus
2L 23513712 2L 3467133..3467250 137..20 530 96.6 Minus
2L 23513712 2L 3466335..3466416 495..414 410 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:18:47 has no hits.

BO04212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:48 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-PA 1..480 15..495 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:54 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8844-PB 1..480 15..495 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:52 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 12..503 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:54 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 12..503 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:54 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3466329..3466416 414..503 95 -> Minus
2L 3466787..3467062 138..413 100 -> Minus
2L 3467133..3467255 14..137 93 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:52 Download gff for BO04212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466329..3466416 414..503 95 -> Minus
arm_2L 3466787..3467062 138..413 100 -> Minus
arm_2L 3467133..3467255 14..137 93 -> Minus

BO04212.5prime Sequence

509 bp (508 high quality bases) assembled on 2005-12-01

> BO04212.5prime
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCT
TTCTAGACC

BO04212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8844-PA 480 Pdsw-RA 1..476 17..492 2280 99.1 Plus
CG8844-PB 480 Pdsw-RB 1..476 17..492 2280 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..654 17..492 2320 99.2 Plus
Pdsw-RA 651 CG8844-RA 92..567 17..492 2320 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 98..374 1385 100 Plus
2L 23513712 2L 3467133..3467250 375..492 530 96.6 Plus
2L 23513712 2L 3466335..3466416 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:15:59 has no hits.

BO04212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:49 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-PA 1..480 17..497 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:55 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8844-PB 1..480 17..497 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:29 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 9..500 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:55 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 9..500 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:55 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3466329..3466416 9..98 95 -> Plus
2L 3466787..3467062 99..374 100 -> Plus
2L 3467133..3467255 375..498 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:29 Download gff for BO04212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466329..3466416 9..98 95 -> Plus
arm_2L 3466787..3467062 99..374 100 -> Plus
arm_2L 3467133..3467255 375..498 93 -> Plus

BO04212.complete Sequence

511 bp (511 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629666

> BO04212.complete
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCT
TTCTAGACCAT

BO04212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 480 CG8844-PB 1..476 17..492 2320 99.2 Plus
Pdsw-RA 480 CG8844-PA 1..476 17..492 2320 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..654 17..492 2320 99.2 Plus
Pdsw-RA 651 CG8844-RA 92..567 17..492 2320 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 98..374 1385 100 Plus
2L 23513712 2L 3467133..3467250 375..492 530 96.6 Plus
2L 23513712 2L 3466335..3466416 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:47:22 has no hits.

BO04212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:23 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 1..480 17..497 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:43 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 88..576 9..500 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:55 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 92..567 17..495 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:23 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 88..576 9..500 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:11 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 92..567 17..495 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:11 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3466335..3466416 17..98 100 -> Plus
2L 3466787..3467062 99..374 100 -> Plus
2L 3467133..3467250 375..495 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:55 Download gff for BO04212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466335..3466416 17..98 100 -> Plus
arm_2L 3466787..3467062 99..374 100 -> Plus
arm_2L 3467133..3467250 375..495 94   Plus

BO04212.pep Sequence

Translation from 16 to 511

> BO04212.pep
MPEPRSPMASFAESVLNVIDGPITWFRESIVEPNQQKQNWYHQRFRRVPT
IDQCYTDDAVCRFEADQQFRRDRMVDNEIVNILRQRFEDCTLYEAPDHMV
KCRPLMDQYEKATENWFIKYGDLGGYANAKTAYMKQKHRLIWERRHGPVG
SGMKEEAAHASFLDH

BO04212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-PB 159 CG8844-PB 1..159 1..159 875 100 Plus
Pdsw-PA 159 CG8844-PA 1..159 1..159 875 100 Plus