Clone Sequence Records
BO04213.3prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-01
> BO04213.3prime
ATGGTCTAGAAAGCTTGCCTCGATCTCGATGATGGCGCCCGCCTTGGACA
GTGCCTCCTTGAGTTTCTCGGCCTCCTCCTTGGGGATGTCCTCCTTAACG
ATGGTCGGTGCGCTCTCGACGAACTTTTTGGCCTGCACCAGGTTCATGCC
CTCGAGTAGGTTCTTCACCTCCTTGATCAGCGCCACCTTCTGCTTTTCGT
CGAACTTGACCAGCTTGACCTTGAAGGAGGTCTGTACCTTCTTGGGCGCT
GCCTCCTCCTCATCCTCGGCGGGAGCAGCACGTGCCGGCCCAGCGGCGAA
TTGTGGGGCAAATGCGGTCTCGGGCAGGTTCAGTTTCTGTTTGAGCAGGG
TGCTCAGCTCGGCCACCTCGAGGAGATTGAGCGCGGCAATGTTGTTGACA
ATCGAGTCCAGTTTGGGATTGGGTGGCTTGGCGGCTCCTTCCGGCGCGGG
AGGCACCAGTTTTTCCGCACCCGAGACTGCGGCGGCCGGAGCCGCTGCAC
TGTACATGCGATGCAGCTGCACTTGGCGCGAAATCTGGCGAAGGGCGAGG
CGTGTGATGTGCATGTCGACTGATAACT
BO04213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5012-PA | 549 | mRpL12-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..646 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957492 | 564..19 | 2730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:02:51 has no hits.
BO04213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:50 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:56 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:12 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..646 | 19..572 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:41 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..646 | 19..572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:41 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956940..8957492 | 19..572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:12 Download gff for
BO04213.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950040..8950592 | 19..572 | 99 | | Minus |
BO04213.5prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-01
> BO04213.5prime
GAAGTTATCAGTCGACATGCACATCACACGCCTCGCCCTTCGCCAGATTT
CGCGCCAAGTGCAGCTGCATCGCATGTACAGTGCAGCGGCTCCGGCCGCC
GCAGTCTCGGGTGCGGAAAAACTGGTGCCTCCCGCGCCGGAAGGAGCCGC
CAAGCCACCCAATCCCAAACTGGACTCGATTGTCAACAACATTGCCGCGC
TCAATCTCCTCGAGGTGGCCGAGCTGAGCACCCTGCTCAAACAGAAACTG
AACCTGCCCGAGACCGCATTTGCCCCACAATTCGCCGCTGGGCCGGCACG
TGCTGCTCCCGCCGAGGATGAGGAGGAGGCAGCGCCCAAGAAGGTACAGA
CCTCCTTCAAGGTCAAGCTGGTCAAGTTCGACGAAAAGCAGAAGGTGGCG
CTGATCAAGGAGGTGAAGAACCTACTCGAGGGCATGAACCTGGTGCAGGC
CAAAAAGTTCGTCGAGAGCGCACCGACCATCGTTAAGGAGGACATCCCCA
AGGAGGAGGCCGAGAAACTCAAGGAGGCACTGTCCAAGGCGGGCGCCATC
ATCGAGATCGAGGCAAGCTTTCTAGACC
BO04213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5012-PA | 549 | mRpL12-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..646 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957492 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:41:03 has no hits.
BO04213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:51 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:58 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:03 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..646 | 9..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:16:15 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..646 | 9..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:16:15 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956940..8957492 | 9..562 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:03 Download gff for
BO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950040..8950592 | 9..562 | 99 | | Plus |
BO04213.complete Sequence
580 bp (580 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629667
> BO04213.complete
GAAGTTATCAGTCGACATGCACATCACACGCCTCGCCCTTCGCCAGATTT
CGCGCCAAGTGCAGCTGCATCGCATGTACAGTGCAGCGGCTCCGGCCGCC
GCAGTCTCGGGTGCGGAAAAACTGGTGCCTCCCGCGCCGGAAGGAGCCGC
CAAGCCACCCAATCCCAAACTGGACTCGATTGTCAACAACATTGCCGCGC
TCAATCTCCTCGAGGTGGCCGAGCTGAGCACCCTGCTCAAACAGAAACTG
AACCTGCCCGAGACCGCATTTGCCCCACAATTCGCCGCTGGGCCGGCACG
TGCTGCTCCCGCCGAGGATGAGGAGGAGGCAGCGCCCAAGAAGGTACAGA
CCTCCTTCAAGGTCAAGCTGGTCAAGTTCGACGAAAAGCAGAAGGTGGCG
CTGATCAAGGAGGTGAAGAACCTACTCGAGGGCATGAACCTGGTGCAGGC
CAAAAAGTTCGTCGAGAGCGCACCGACCATCGTTAAGGAGGACATCCCCA
AGGAGGAGGCCGAGAAACTCAAGGAGGCACTGTCCAAGGCGGGCGCCATC
ATCGAGATCGAGGCAAGCTTTCTAGACCAT
BO04213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 549 | CG5012-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..646 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957492 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:10:57 has no hits.
BO04213.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:12 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:03 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 93..645 | 9..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:42 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 101..646 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:12 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 93..645 | 9..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:37 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 101..646 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:37 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956947..8957492 | 17..564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:42 Download gff for
BO04213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950047..8950592 | 17..564 | 99 | | Plus |
BO04213.pep Sequence
Translation from 16 to 580
> BO04213.pep
MHITRLALRQISRQVQLHRMYSAAAPAAAVSGAEKLVPPAPEGAAKPPNP
KLDSIVNNIAALNLLEVAELSTLLKQKLNLPETAFAPQFAAGPARAAPAE
DEEEAAPKKVQTSFKVKLVKFDEKQKVALIKEVKNLLEGMNLVQAKKFVE
SAPTIVKEDIPKEEAEKLKEALSKAGAIIEIEASFLDH
BO04213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-PA | 182 | CG5012-PA | 1..182 | 1..182 | 885 | 100 | Plus |
