Clone BO04214 Report

Search the DGRC for BO04214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptGmer-RA
Protein status:BO04214.pep: validated full length
Sequenced Size:997

Clone Sequence Records

BO04214.3prime Sequence

926 bp (772 high quality bases) assembled on 2005-12-01

> BO04214.3prime
ATGGTCTAGAAAGCTTGCCTTTCTAGCCTGGTCGTAGTTTTCTATGTACC
ACTTAACCGAGGCGTTGATTGCCGTTTCCAAGTCCGTAAATGCGTAGTCT
GGCAGGAAGGAGCGAAGCTTGGCATTAGACGCAGTCTTTTTGTACTGTCC
ATCCGACTTGCTCGTATCACAGACCAGTCTTCCATTAAAATTAAATGCTT
TTGCAACGGCCTGTGCCACCTCGAAGATGGTCACCTCTTGCACTTCGTCC
GCGCTTAGGATGATGGGCTCCACACTTTCGTAGTTCCTGAGCACCCAGAT
CATCAGCTCCGCCAGGTCCCGGGAGTATACAAACTGCCGTAGTGGCATGC
CGCTTCCGAAAACGGTGAACACCTTGTCGTTTTCGGGGACGTCAGTCTTC
TCCGTAACCAGCTGGTGCATCCTATAGATCATGCCCGGAATGACGTGGCT
GACCTCTGGATTATAGTTGTCGTGGGGACCGAATATGTTGCACGGAATGA
CTGAGGTGTACACCCGGCCATATTTATCGTGGTAGGCGTGGTTCTGCACG
TCTATCAGTCGCTTTGCGTAGGAGTAACCATAATTGGAGGGGTGCGGCGG
CCCGTTGTGCACCATGGTCTCATCTATGGGGTAGCTGGTTTTGTCCGGAA
AAATGCAGGTGGACAGGCAGGACACCACCTTTACGCAGCCCTGTTCGTGT
GCCGTTTGCAGGACATTGTCGTTAATGAGCAGGTTGTTGCGCAAGAAGTC
CAGGTTGTTGTTCATGTTGTGGAACAGGCCTCCGACCATTGCAGCCAGAT
GGATGACATGCGTGGGCTTCTCTCGGGCGAAGAGTGCCTGCGTGGCGGCC
AGATTTGTCAAATCTGCATCTTTAGAGCCAGCAAAAAACATTGCTCGTCC
TCTGGGGACTGCTCCTTGATCACAGC

BO04214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3495-PA 966 Gmer-RA 93..963 889..19 4055 98.6 Minus
CG3495-PA 966 Gmer-RA 55..98 926..883 195 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 1116 CG3495-RA 153..1061 926..19 4340 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22887849..22888415 183..749 2640 97.7 Plus
2R 25286936 2R 22887629..22887793 19..183 825 100 Plus
2R 25286936 2R 22888466..22888580 742..856 575 100 Plus
2R 25286936 2R 22888635..22888705 857..926 290 97.2 Plus
Blast to na_te.dros performed on 2015-02-13 05:30:05 has no hits.

BO04214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:52 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-PA 55..966 15..926 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:59 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3495-PA 55..966 15..926 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:15 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 153..1066 11..926 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:54 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 153..1066 11..926 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:54 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22887624..22887793 11..183 97 <- Plus
2R 22887850..22888407 184..741 98 <- Plus
2R 22888466..22888580 742..856 100 <- Plus
2R 22888635..22888705 857..926 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:15 Download gff for BO04214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18775147..18775316 11..183 97 <- Plus
arm_2R 18775373..18775930 184..741 98 <- Plus
arm_2R 18775989..18776103 742..856 100 <- Plus
arm_2R 18776158..18776228 857..926 97   Plus

BO04214.5prime Sequence

938 bp (816 high quality bases) assembled on 2005-12-01

> BO04214.5prime
GAAGTTATCAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGC
TGGTGGGCAAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGAC
GAGCAATGGTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGC
CGCCACGCAGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATC
TGGCTGCAATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGAC
TTCTTGCGCAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACA
CGAACAGGGCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTC
CGGACAAAACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCG
CCGCACCCCTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGT
GCAGAACCACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCA
TTCCGTGCAACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGC
CACGTCATTCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAA
GACTGACGTCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCA
TGCCACTACGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATC
TGGGTGCTCAGGAACTACGAAAGTGTGGAGCCCATCATCCTAAGCGCGGA
CGAAGTGCAAGAGGTGACCATCTTCGAGGTGGCACAGGCCGTTGCAAAAG
CATTTAATTTTAATGGAAGACTGGTCTGTGATACGAGCAAGTCGGATGGA
CAGTACAAAAAGACTGCGTCTAATGCCAAGCTTCGCTCCTTCCTGCCAGA
CTACGCTTTTACGGACTTGGAAACGGCAATCAACGCCT

BO04214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3495-PA 966 Gmer-RA 1..922 17..938 4210 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 1116 CG3495-RA 98..1020 16..938 4375 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22887849..22888415 815..249 2640 97.7 Minus
2R 25286936 2R 22887670..22887793 938..815 605 99.2 Minus
2R 25286936 2R 22888466..22888580 256..142 575 100 Minus
2R 25286936 2R 22888635..22888760 141..16 570 96.8 Minus
Blast to na_te.dros performed on 2015-02-04 19:18:57 has no hits.

BO04214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:52 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-PA 1..922 17..938 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:01 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3495-PA 1..922 17..938 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:54 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 98..1020 16..938 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:56 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 98..1020 16..938 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:56 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22888466..22888580 142..256 100 <- Minus
2R 22887670..22887793 815..938 99 <- Minus
2R 22887850..22888407 257..814 98 <- Minus
2R 22888635..22888760 16..141 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:54 Download gff for BO04214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18775193..18775316 815..938 99 <- Minus
arm_2R 18775373..18775930 257..814 98 <- Minus
arm_2R 18775989..18776103 142..256 100 <- Minus
arm_2R 18776158..18776283 16..141 96   Minus

BO04214.complete Sequence

997 bp (997 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629668

> BO04214.complete
GAAGTTATCAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGC
TGGTGGGCAAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGAC
GAGCAATGGTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGC
CGCCACGCAGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATC
TGGCTGCAATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGAC
TTCTTGCGCAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACA
CGAACAGGGCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTC
CGGACAAAACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCG
CCGCACCCCTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGT
GCAGAACCACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCA
TTCCGTGCAACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGC
CACGTCATTCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAA
GACTGACGTCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCA
TGCCACTACGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATC
TGGGTGCTCAGGAACTACGAAAGTGTGGAGCCCATCATCCTAAGCGCGGA
CGAAGTGCAAGAGGTGACCATCTTCGAGGTGGCACAGGCCGTTGCAAAAG
CATTTAATTTTAATGGAAGACTGGTCTGTGATACGAGCAAGTCGGATGGA
CAGTACAAAAAGACTGCGTCTAATGCCAAGCTTCGCTCCTTCCTGCCAGA
CTACGCATTTACGGACTTGGAAACGGCAATCAACGCCTCGGTTAAGTGGT
ACATAGAAAACTACGACCAGGCTAGAAAGGCAAGCTTTCTAGACCAT

BO04214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 966 CG3495-PA 1..963 17..979 4590 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 1116 CG3495-RA 98..1061 16..979 4595 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22887849..22888415 815..249 2640 97.7 Minus
2R 25286936 2R 22887629..22887793 979..815 825 100 Minus
2R 25286936 2R 22888466..22888580 256..142 575 100 Minus
2R 25286936 2R 22888635..22888760 141..16 570 96.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:51:32 has no hits.

BO04214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:43 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 1..966 17..983 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:12 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 92..1060 16..987 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:51 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 99..1061 17..981 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:43 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 92..1060 16..987 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:46 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 99..1061 17..981 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:46 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22887627..22887793 815..981 98 <- Minus
2R 22887850..22888407 257..814 98 <- Minus
2R 22888466..22888580 142..256 100 <- Minus
2R 22888635..22888749 26..141 96 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:51 Download gff for BO04214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18775150..18775316 815..981 98 <- Minus
arm_2R 18775373..18775930 257..814 98 <- Minus
arm_2R 18775989..18776103 142..256 100 <- Minus
arm_2R 18776158..18776272 26..141 96 <- Minus

BO04214.pep Sequence

Translation from 16 to 997

> BO04214.pep
MKKVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQAL
FAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCV
KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQNHAY
HDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPE
NDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEV
TIFEVAQAVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRSFLPDYAFTD
LETAINASVKWYIENYDQARKASFLDH

BO04214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-PA 321 CG3495-PA 1..321 1..321 1696 100 Plus