Clone Sequence Records
BO04214.3prime Sequence
926 bp (772 high quality bases) assembled on 2005-12-01
> BO04214.3prime
ATGGTCTAGAAAGCTTGCCTTTCTAGCCTGGTCGTAGTTTTCTATGTACC
ACTTAACCGAGGCGTTGATTGCCGTTTCCAAGTCCGTAAATGCGTAGTCT
GGCAGGAAGGAGCGAAGCTTGGCATTAGACGCAGTCTTTTTGTACTGTCC
ATCCGACTTGCTCGTATCACAGACCAGTCTTCCATTAAAATTAAATGCTT
TTGCAACGGCCTGTGCCACCTCGAAGATGGTCACCTCTTGCACTTCGTCC
GCGCTTAGGATGATGGGCTCCACACTTTCGTAGTTCCTGAGCACCCAGAT
CATCAGCTCCGCCAGGTCCCGGGAGTATACAAACTGCCGTAGTGGCATGC
CGCTTCCGAAAACGGTGAACACCTTGTCGTTTTCGGGGACGTCAGTCTTC
TCCGTAACCAGCTGGTGCATCCTATAGATCATGCCCGGAATGACGTGGCT
GACCTCTGGATTATAGTTGTCGTGGGGACCGAATATGTTGCACGGAATGA
CTGAGGTGTACACCCGGCCATATTTATCGTGGTAGGCGTGGTTCTGCACG
TCTATCAGTCGCTTTGCGTAGGAGTAACCATAATTGGAGGGGTGCGGCGG
CCCGTTGTGCACCATGGTCTCATCTATGGGGTAGCTGGTTTTGTCCGGAA
AAATGCAGGTGGACAGGCAGGACACCACCTTTACGCAGCCCTGTTCGTGT
GCCGTTTGCAGGACATTGTCGTTAATGAGCAGGTTGTTGCGCAAGAAGTC
CAGGTTGTTGTTCATGTTGTGGAACAGGCCTCCGACCATTGCAGCCAGAT
GGATGACATGCGTGGGCTTCTCTCGGGCGAAGAGTGCCTGCGTGGCGGCC
AGATTTGTCAAATCTGCATCTTTAGAGCCAGCAAAAAACATTGCTCGTCC
TCTGGGGACTGCTCCTTGATCACAGC
BO04214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3495-PA | 966 | Gmer-RA | 93..963 | 889..19 | 4055 | 98.6 | Minus |
CG3495-PA | 966 | Gmer-RA | 55..98 | 926..883 | 195 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 1116 | CG3495-RA | 153..1061 | 926..19 | 4340 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22887849..22888415 | 183..749 | 2640 | 97.7 | Plus |
2R | 25286936 | 2R | 22887629..22887793 | 19..183 | 825 | 100 | Plus |
2R | 25286936 | 2R | 22888466..22888580 | 742..856 | 575 | 100 | Plus |
2R | 25286936 | 2R | 22888635..22888705 | 857..926 | 290 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:30:05 has no hits.
BO04214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:52 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-PA | 55..966 | 15..926 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:59 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3495-PA | 55..966 | 15..926 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:15 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 153..1066 | 11..926 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:54 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 153..1066 | 11..926 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:54 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22887624..22887793 | 11..183 | 97 | <- | Plus |
2R | 22887850..22888407 | 184..741 | 98 | <- | Plus |
2R | 22888466..22888580 | 742..856 | 100 | <- | Plus |
2R | 22888635..22888705 | 857..926 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:15 Download gff for
BO04214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18775147..18775316 | 11..183 | 97 | <- | Plus |
arm_2R | 18775373..18775930 | 184..741 | 98 | <- | Plus |
arm_2R | 18775989..18776103 | 742..856 | 100 | <- | Plus |
arm_2R | 18776158..18776228 | 857..926 | 97 | | Plus |
BO04214.5prime Sequence
938 bp (816 high quality bases) assembled on 2005-12-01
> BO04214.5prime
GAAGTTATCAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGC
TGGTGGGCAAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGAC
GAGCAATGGTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGC
CGCCACGCAGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATC
TGGCTGCAATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGAC
TTCTTGCGCAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACA
CGAACAGGGCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTC
CGGACAAAACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCG
CCGCACCCCTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGT
GCAGAACCACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCA
TTCCGTGCAACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGC
CACGTCATTCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAA
GACTGACGTCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCA
TGCCACTACGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATC
TGGGTGCTCAGGAACTACGAAAGTGTGGAGCCCATCATCCTAAGCGCGGA
CGAAGTGCAAGAGGTGACCATCTTCGAGGTGGCACAGGCCGTTGCAAAAG
CATTTAATTTTAATGGAAGACTGGTCTGTGATACGAGCAAGTCGGATGGA
CAGTACAAAAAGACTGCGTCTAATGCCAAGCTTCGCTCCTTCCTGCCAGA
CTACGCTTTTACGGACTTGGAAACGGCAATCAACGCCT
BO04214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3495-PA | 966 | Gmer-RA | 1..922 | 17..938 | 4210 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 1116 | CG3495-RA | 98..1020 | 16..938 | 4375 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22887849..22888415 | 815..249 | 2640 | 97.7 | Minus |
2R | 25286936 | 2R | 22887670..22887793 | 938..815 | 605 | 99.2 | Minus |
2R | 25286936 | 2R | 22888466..22888580 | 256..142 | 575 | 100 | Minus |
2R | 25286936 | 2R | 22888635..22888760 | 141..16 | 570 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:18:57 has no hits.
BO04214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:52 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-PA | 1..922 | 17..938 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:01 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3495-PA | 1..922 | 17..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:54 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 98..1020 | 16..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:56 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 98..1020 | 16..938 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:56 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22888466..22888580 | 142..256 | 100 | <- | Minus |
2R | 22887670..22887793 | 815..938 | 99 | <- | Minus |
2R | 22887850..22888407 | 257..814 | 98 | <- | Minus |
2R | 22888635..22888760 | 16..141 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:54 Download gff for
BO04214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18775193..18775316 | 815..938 | 99 | <- | Minus |
arm_2R | 18775373..18775930 | 257..814 | 98 | <- | Minus |
arm_2R | 18775989..18776103 | 142..256 | 100 | <- | Minus |
arm_2R | 18776158..18776283 | 16..141 | 96 | | Minus |
BO04214.complete Sequence
997 bp (997 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629668
> BO04214.complete
GAAGTTATCAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGC
TGGTGGGCAAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGAC
GAGCAATGGTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGC
CGCCACGCAGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATC
TGGCTGCAATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGAC
TTCTTGCGCAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACA
CGAACAGGGCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTC
CGGACAAAACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCG
CCGCACCCCTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGT
GCAGAACCACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCA
TTCCGTGCAACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGC
CACGTCATTCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAA
GACTGACGTCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCA
TGCCACTACGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATC
TGGGTGCTCAGGAACTACGAAAGTGTGGAGCCCATCATCCTAAGCGCGGA
CGAAGTGCAAGAGGTGACCATCTTCGAGGTGGCACAGGCCGTTGCAAAAG
CATTTAATTTTAATGGAAGACTGGTCTGTGATACGAGCAAGTCGGATGGA
CAGTACAAAAAGACTGCGTCTAATGCCAAGCTTCGCTCCTTCCTGCCAGA
CTACGCATTTACGGACTTGGAAACGGCAATCAACGCCTCGGTTAAGTGGT
ACATAGAAAACTACGACCAGGCTAGAAAGGCAAGCTTTCTAGACCAT
BO04214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 966 | CG3495-PA | 1..963 | 17..979 | 4590 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 1116 | CG3495-RA | 98..1061 | 16..979 | 4595 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22887849..22888415 | 815..249 | 2640 | 97.7 | Minus |
2R | 25286936 | 2R | 22887629..22887793 | 979..815 | 825 | 100 | Minus |
2R | 25286936 | 2R | 22888466..22888580 | 256..142 | 575 | 100 | Minus |
2R | 25286936 | 2R | 22888635..22888760 | 141..16 | 570 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:32 has no hits.
BO04214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:43 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 1..966 | 17..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:12 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 92..1060 | 16..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:51 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 99..1061 | 17..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:43 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 92..1060 | 16..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:46 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 99..1061 | 17..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:46 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22887627..22887793 | 815..981 | 98 | <- | Minus |
2R | 22887850..22888407 | 257..814 | 98 | <- | Minus |
2R | 22888466..22888580 | 142..256 | 100 | <- | Minus |
2R | 22888635..22888749 | 26..141 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:51 Download gff for
BO04214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18775150..18775316 | 815..981 | 98 | <- | Minus |
arm_2R | 18775373..18775930 | 257..814 | 98 | <- | Minus |
arm_2R | 18775989..18776103 | 142..256 | 100 | <- | Minus |
arm_2R | 18776158..18776272 | 26..141 | 96 | <- | Minus |
BO04214.pep Sequence
Translation from 16 to 997
> BO04214.pep
MKKVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQAL
FAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCV
KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQNHAY
HDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPE
NDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEV
TIFEVAQAVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRSFLPDYAFTD
LETAINASVKWYIENYDQARKASFLDH
BO04214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-PA | 321 | CG3495-PA | 1..321 | 1..321 | 1696 | 100 | Plus |