Clone Sequence Records
BO04215.3prime Sequence
776 bp (775 high quality bases) assembled on 2005-12-01
> BO04215.3prime
ATGGTCTAGAAAGCTTGCCGTAGACTTTGGCGTTTCCTCATTCATCTGGT
TTTTAGCATGGACATCAAGAACTTGCACAAAACTGTTCTGATGGGCCTGC
AGTTGCTGAATAAGGTGGCCAGGTGCTTGACTAAGGGTCTGGACAAGTTG
TGCCTGGACCGCGTGCAGGCCGGGCATCTGAGCGTAGGCCACAAGCTGGT
TCCTACTCAGCATGGTCTCCTCCACGATGCCTCCCAGCAGGACCATTTGC
GGCACCCTGCGAACGATTCGTAGCAGTGCGGCAGTCTTTTCCGGGTCCGG
TGAGAAGACGATGCAATGATTGGAGTGGAACAGGGGCACAATCGCTTCGT
ATCGAGTATTCTTCACCGCCTGTTCGATGATCTTGCTGCCGTAGGACTTG
AGGTGCAGGTTCTGCTTGTGAAGCTGAACGCGCACGCGGAAGATGTCATC
GGCGGTTATAGAACTTAAGTGAAAGAAGGCAACCAGTCGGGAATGATCCA
GCCAATTCCGCACCTCTCGTGCGATGATTTCGTTGTATGGATTCTCCTGC
TGCTGTTGCGTGCGCTCCGCACGCGTTTTGAAGCAGCTCTTAGCTTTTGG
GAGTTCCGGATATTTCGGCTGCGTGACTGCGACTACCCGGGCCCGCTCGT
AGTGCGGTGCTTTCGGCCGCTGTATATTGATCTTACCCCTAAAGCGAAGA
AATTGTAGCGCAGGAGTACTGCTCTTAGCCAGGGAAAGGCTTCTTTGTAT
CAGGGTGGCCATGTCGACTGATAACT
BO04215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11488-PA | 747 | mRpL10-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL10-RA | 903 | CG11488-RA | 91..835 | 763..19 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 203993..204714 | 740..19 | 3610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:54:05 has no hits.
BO04215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:53 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11488-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:03 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11488-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:18 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 88..835 | 19..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:08 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 88..835 | 19..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:08 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 203993..204714 | 19..740 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:18 Download gff for
BO04215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 203993..204714 | 19..740 | 100 | | Minus |
BO04215.5prime Sequence
776 bp (775 high quality bases) assembled on 2005-12-01
> BO04215.5prime
GAAGTTATCAGTCGACATGGCCACCCTGATACAAAGAAGCCTTTCCCTGG
CTAAGAGCAGTACTCCTGCGCTACAATTTCTTCGCTTTAGGGGTAAGATC
AATATACAGCGGCCGAAAGCACCGCACTACGAGCGGGCCCGGGTAGTCGC
AGTCACGCAGCCGAAATATCCGGAACTCCCAAAAGCTAAGAGCTGCTTCA
AAACGCGTGCGGAGCGCACGCAACAGCAGCAGGAGAATCCATACAACGAA
ATCATCGCACGAGAGGTGCGGAATTGGCTGGATCATTCCCGACTGGTTGC
CTTCTTTCACTTAAGTTCTATAACCGCCGATGACATCTTCCGCGTGCGCG
TTCAGCTTCACAAGCAGAACCTGCACCTCAAGTCCTACGGCAGCAAGATC
ATCGAACAGGCGGTGAAGAATACTCGATACGAAGCGATTGTGCCCCTGTT
CCACTCCAATCATTGCATCGTCTTCTCACCGGACCCGGAAAAGACTGCCG
CACTGCTACGAATCGTTCGCAGGGTGCCGCAAATGGTCCTGCTGGGAGGC
ATCGTGGAGGAGACCATGCTGAGTAGGAACCAGCTTGTGGCCTACGCTCA
GATGCCCGGCCTGCACGCGGTCCAGGCACAACTTGTCCAGACCCTTAGTC
AAGCACCTGGCCACCTTATTCAGCAACTGCAGGCCCATCAGAACAGTTTT
GTGCAAGTTCTTGATGTCCATGCTAAAAACCAGATGAATGAGGAAACGCC
AAAGTCTACGGCAAGCTTTCTAGACC
BO04215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11488-PA | 747 | mRpL10-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL10-RA | 903 | CG11488-RA | 91..835 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 203993..204714 | 39..760 | 3610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:19:07 has no hits.
BO04215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:54 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11488-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:04 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11488-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:56 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 88..835 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:57 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 88..835 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:57 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 203993..204714 | 39..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:56 Download gff for
BO04215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 203993..204714 | 39..760 | 100 | | Plus |
BO04215.complete Sequence
778 bp (778 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629669
> BO04215.complete
GAAGTTATCAGTCGACATGGCCACCCTGATACAAAGAAGCCTTTCCCTGG
CTAAGAGCAGTACTCCTGCGCTACAATTTCTTCGCTTTAGGGGTAAGATC
AATATACAGCGGCCGAAAGCACCGCACTACGAGCGGGCCCGGGTAGTCGC
AGTCACGCAGCCGAAATATCCGGAACTCCCAAAAGCTAAGAGCTGCTTCA
AAACGCGTGCGGAGCGCACGCAACAGCAGCAGGAGAATCCATACAACGAA
ATCATCGCACGAGAGGTGCGGAATTGGCTGGATCATTCCCGACTGGTTGC
CTTCTTTCACTTAAGTTCTATAACCGCCGATGACATCTTCCGCGTGCGCG
TTCAGCTTCACAAGCAGAACCTGCACCTCAAGTCCTACGGCAGCAAGATC
ATCGAACAGGCGGTGAAGAATACTCGATACGAAGCGATTGTGCCCCTGTT
CCACTCCAATCATTGCATCGTCTTCTCACCGGACCCGGAAAAGACTGCCG
CACTGCTACGAATCGTTCGCAGGGTGCCGCAAATGGTCCTGCTGGGAGGC
ATCGTGGAGGAGACCATGCTGAGTAGGAACCAGCTTGTGGCCTACGCTCA
GATGCCCGGCCTGCACGCGGTCCAGGCACAACTTGTCCAGACCCTTAGTC
AAGCACCTGGCCACCTTATTCAGCAACTGCAGGCCCATCAGAACAGTTTT
GTGCAAGTTCTTGATGTCCATGCTAAAAACCAGATGAATGAGGAAACGCC
AAAGTCTACGGCAAGCTTTCTAGACCAT
BO04215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL10-RA | 747 | CG11488-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL10-RA | 903 | CG11488-RA | 91..835 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 203993..204714 | 39..760 | 3610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:49 has no hits.
BO04215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:10 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:13 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 83..830 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:39 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 92..835 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:10 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 83..830 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:36 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL10-RA | 92..835 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:36 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 203870..203891 | 17..38 | 100 | -> | Plus |
| 2L | 203993..204714 | 39..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:39 Download gff for
BO04215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 203870..203891 | 17..38 | 100 | -> | Plus |
| arm_2L | 203993..204714 | 39..762 | 99 | | Plus |
BO04215.pep Sequence
Translation from 16 to 778
> BO04215.pep
MATLIQRSLSLAKSSTPALQFLRFRGKINIQRPKAPHYERARVVAVTQPK
YPELPKAKSCFKTRAERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLS
SITADDIFRVRVQLHKQNLHLKSYGSKIIEQAVKNTRYEAIVPLFHSNHC
IVFSPDPEKTAALLRIVRRVPQMVLLGGIVEETMLSRNQLVAYAQMPGLH
AVQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHAKNQMNEETPKSTAS
FLDH
BO04215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL10-PA | 248 | CG11488-PA | 1..248 | 1..248 | 1261 | 100 | Plus |
