Clone BO04216 Report

Search the DGRC for BO04216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptRPA2-RA
Protein status:BO04216.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO04216.3prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-01

> BO04216.3prime
ATGGTCTAGAAAGCTTGCCATTGTGCAAATAAAGTGATCTGCGTCAATGC
TGGAATAAATGTGTCCCTCGGAAATCATAAAGTCCAGAATGTTGGTCAAC
TCAGAGTCGCTGATGTGGGAGAATTTGGCTTTCAGTTCCTTGCGGGAGAT
GCCCTCCTCGGAAACATTGCTCTTGATGGCCTGGAATACGGCCTGCTGCT
TGGGCTCCAGCCCACTGACAATGGCCGAGCTCTGGGAGGCGGTGAAATCA
GCTATGGAGCCTGAGCCGGAAGAAGCCCCTGCACCAGCTCCAGCTCCACC
CTTGCTCTGGTAGTCCTCGGCCCTGTAGCGGGCATTGAGTACTTCCAGCA
GGTGGGTGCACACCTCGTTGGGATCCAAAACGGGCAGTAGCTTGAAGATC
ATTAGGGTTTTGGAACCGCCTTGCGACCGGGTGGTGCCGTAGACCTTCAC
GTAGTTGTTGACCATTACTTCGGGTGCCTTGAGAGCGTCGCCCTCCTCAA
GCCAGTAGTGCGCATCGATCCTGCCGCTATGATCCTCCAGGGTGTAGGTG
ATCTTCGTCGAGGAAGTCTCCACGTTCCGCACTATGGCCACAACACATGC
CATGGCGTACTGCATGCCGAACAACTCGATGTTTCCCTCTGGGGCGTCCA
CAATCTGCTTCACCACCAGGGGCACTATTCCTTCTCCCTTTTGATTGCTG
GCGGCTCCAGTTGGCGCAGTTTGTGTGGCATTGAAATCTCCAAATGAATC
ATTCATGTCGACTGATAACT

BO04216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9273-PA 741 CG9273-RA 1..738 756..19 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-RB 905 CG9273-RB 102..839 756..19 3690 100 Minus
RPA2-RA 963 CG9273-RA 102..839 756..19 3690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20925264..20925850 95..681 2935 100 Plus
2L 23513712 2L 20925099..20925174 19..94 380 100 Plus
2L 23513712 2L 20925913..20925975 681..743 315 100 Plus
Blast to na_te.dros performed 2015-02-12 16:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6359..6402 717..759 118 77.3 Plus

BO04216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:55 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9273-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:05 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9273-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:07 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 97..842 15..763 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:12 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 97..842 15..763 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:12 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20925095..20925174 15..94 97 <- Plus
2L 20925264..20925850 95..681 100 <- Plus
2L 20925914..20925975 682..743 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:07 Download gff for BO04216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20925095..20925174 15..94 97 <- Plus
arm_2L 20925264..20925850 95..681 100 <- Plus
arm_2L 20925914..20925975 682..743 100 <- Plus

BO04216.5prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-01

> BO04216.5prime
GAAGTTATCAGTCGACATGAATGATTCATTTGGAGATTTCAATGCCACAC
AAACTGCGCCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTG
CCCCTGGTGGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTT
GTTCGGCATGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACG
TGGAGACTTCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGC
AGGATCGATGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACC
CGAAGTAATGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGC
AAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGAT
CCCAACGAGGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAG
GGCCGAGGACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTT
CTTCCGGCTCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCC
ATTGTCAGTGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAA
GAGCAATGTTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAAT
TCTCCCACATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATT
TCCGAGGGACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCAC
AATGGCAAGCTTTCTAGACC

BO04216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9273-PA 741 CG9273-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-RB 905 CG9273-RB 102..839 17..754 3690 100 Plus
RPA2-RA 963 CG9273-RA 102..839 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20925264..20925850 678..92 2935 100 Minus
2L 23513712 2L 20925099..20925174 754..679 380 100 Minus
2L 23513712 2L 20925913..20925975 92..30 315 100 Minus
Blast to na_te.dros performed 2015-02-12 06:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6359..6412 56..2 119 73.2 Minus

BO04216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:56 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9273-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:07 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9273-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:32 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 97..842 10..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:33 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 97..842 10..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:33 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20925095..20925174 679..758 97 <- Minus
2L 20925264..20925850 92..678 100 <- Minus
2L 20925914..20925975 30..91 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:32 Download gff for BO04216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20925914..20925975 30..91 100 <- Minus
arm_2L 20925264..20925850 92..678 100 <- Minus
arm_2L 20925095..20925174 679..758 97 <- Minus

BO04216.complete Sequence

772 bp (772 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629670

> BO04216.complete
GAAGTTATCAGTCGACATGAATGATTCATTTGGAGATTTCAATGCCACAC
AAACTGCGCCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTG
CCCCTGGTGGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTT
GTTCGGCATGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACG
TGGAGACTTCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGC
AGGATCGATGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACC
CGAAGTAATGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGC
AAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGAT
CCCAACGAGGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAG
GGCCGAGGACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTT
CTTCCGGCTCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCC
ATTGTCAGTGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAA
GAGCAATGTTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAAT
TCTCCCACATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATT
TCCGAGGGACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCAC
AATGGCAAGCTTTCTAGACCAT

BO04216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-RB 741 CG9273-PB 1..738 17..754 3690 100 Plus
RPA2-RA 741 CG9273-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-RB 905 CG9273-RB 102..839 17..754 3690 100 Plus
RPA2-RA 963 CG9273-RA 102..839 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20925264..20925850 678..92 2935 100 Minus
2L 23513712 2L 20925099..20925174 754..679 380 100 Minus
2L 23513712 2L 20925913..20925975 92..30 315 100 Minus
Blast to na_te.dros performed 2014-11-27 16:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6359..6412 56..2 119 73.2 Minus

BO04216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:54 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:41 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 94..839 10..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:15 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 102..839 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:54 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 94..839 10..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:37 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 102..839 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:37 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20925097..20925174 679..756 97 <- Minus
2L 20925264..20925850 92..678 100 <- Minus
2L 20925914..20925975 30..91 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:15 Download gff for BO04216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20925097..20925174 679..756 97 <- Minus
arm_2L 20925264..20925850 92..678 100 <- Minus
arm_2L 20925914..20925975 30..91 100 <- Minus

BO04216.pep Sequence

Translation from 16 to 772

> BO04216.pep
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMASFL
DH

BO04216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-PB 246 CG9273-PB 1..246 1..246 1250 100 Plus
RPA2-PA 246 CG9273-PA 1..246 1..246 1250 100 Plus