Clone Sequence Records
BO04216.3prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-01
> BO04216.3prime
ATGGTCTAGAAAGCTTGCCATTGTGCAAATAAAGTGATCTGCGTCAATGC
TGGAATAAATGTGTCCCTCGGAAATCATAAAGTCCAGAATGTTGGTCAAC
TCAGAGTCGCTGATGTGGGAGAATTTGGCTTTCAGTTCCTTGCGGGAGAT
GCCCTCCTCGGAAACATTGCTCTTGATGGCCTGGAATACGGCCTGCTGCT
TGGGCTCCAGCCCACTGACAATGGCCGAGCTCTGGGAGGCGGTGAAATCA
GCTATGGAGCCTGAGCCGGAAGAAGCCCCTGCACCAGCTCCAGCTCCACC
CTTGCTCTGGTAGTCCTCGGCCCTGTAGCGGGCATTGAGTACTTCCAGCA
GGTGGGTGCACACCTCGTTGGGATCCAAAACGGGCAGTAGCTTGAAGATC
ATTAGGGTTTTGGAACCGCCTTGCGACCGGGTGGTGCCGTAGACCTTCAC
GTAGTTGTTGACCATTACTTCGGGTGCCTTGAGAGCGTCGCCCTCCTCAA
GCCAGTAGTGCGCATCGATCCTGCCGCTATGATCCTCCAGGGTGTAGGTG
ATCTTCGTCGAGGAAGTCTCCACGTTCCGCACTATGGCCACAACACATGC
CATGGCGTACTGCATGCCGAACAACTCGATGTTTCCCTCTGGGGCGTCCA
CAATCTGCTTCACCACCAGGGGCACTATTCCTTCTCCCTTTTGATTGCTG
GCGGCTCCAGTTGGCGCAGTTTGTGTGGCATTGAAATCTCCAAATGAATC
ATTCATGTCGACTGATAACT
BO04216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9273-PA | 741 | CG9273-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA2-RB | 905 | CG9273-RB | 102..839 | 756..19 | 3690 | 100 | Minus |
RPA2-RA | 963 | CG9273-RA | 102..839 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20925264..20925850 | 95..681 | 2935 | 100 | Plus |
2L | 23513712 | 2L | 20925099..20925174 | 19..94 | 380 | 100 | Plus |
2L | 23513712 | 2L | 20925913..20925975 | 681..743 | 315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6359..6402 | 717..759 | 118 | 77.3 | Plus |
BO04216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:55 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9273-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:05 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9273-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:07 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 97..842 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:12 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 97..842 | 15..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:12 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20925095..20925174 | 15..94 | 97 | <- | Plus |
2L | 20925264..20925850 | 95..681 | 100 | <- | Plus |
2L | 20925914..20925975 | 682..743 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:07 Download gff for
BO04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20925095..20925174 | 15..94 | 97 | <- | Plus |
arm_2L | 20925264..20925850 | 95..681 | 100 | <- | Plus |
arm_2L | 20925914..20925975 | 682..743 | 100 | <- | Plus |
BO04216.5prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-01
> BO04216.5prime
GAAGTTATCAGTCGACATGAATGATTCATTTGGAGATTTCAATGCCACAC
AAACTGCGCCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTG
CCCCTGGTGGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTT
GTTCGGCATGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACG
TGGAGACTTCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGC
AGGATCGATGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACC
CGAAGTAATGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGC
AAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGAT
CCCAACGAGGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAG
GGCCGAGGACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTT
CTTCCGGCTCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCC
ATTGTCAGTGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAA
GAGCAATGTTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAAT
TCTCCCACATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATT
TCCGAGGGACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCAC
AATGGCAAGCTTTCTAGACC
BO04216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9273-PA | 741 | CG9273-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA2-RB | 905 | CG9273-RB | 102..839 | 17..754 | 3690 | 100 | Plus |
RPA2-RA | 963 | CG9273-RA | 102..839 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20925264..20925850 | 678..92 | 2935 | 100 | Minus |
2L | 23513712 | 2L | 20925099..20925174 | 754..679 | 380 | 100 | Minus |
2L | 23513712 | 2L | 20925913..20925975 | 92..30 | 315 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6359..6412 | 56..2 | 119 | 73.2 | Minus |
BO04216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:56 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9273-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:07 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9273-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:32 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 97..842 | 10..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:33 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 97..842 | 10..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:33 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20925095..20925174 | 679..758 | 97 | <- | Minus |
2L | 20925264..20925850 | 92..678 | 100 | <- | Minus |
2L | 20925914..20925975 | 30..91 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:32 Download gff for
BO04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20925914..20925975 | 30..91 | 100 | <- | Minus |
arm_2L | 20925264..20925850 | 92..678 | 100 | <- | Minus |
arm_2L | 20925095..20925174 | 679..758 | 97 | <- | Minus |
BO04216.complete Sequence
772 bp (772 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629670
> BO04216.complete
GAAGTTATCAGTCGACATGAATGATTCATTTGGAGATTTCAATGCCACAC
AAACTGCGCCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTG
CCCCTGGTGGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTT
GTTCGGCATGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACG
TGGAGACTTCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGC
AGGATCGATGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACC
CGAAGTAATGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGC
AAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGAT
CCCAACGAGGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAG
GGCCGAGGACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTT
CTTCCGGCTCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCC
ATTGTCAGTGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAA
GAGCAATGTTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAAT
TCTCCCACATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATT
TCCGAGGGACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCAC
AATGGCAAGCTTTCTAGACCAT
BO04216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA2-RB | 741 | CG9273-PB | 1..738 | 17..754 | 3690 | 100 | Plus |
RPA2-RA | 741 | CG9273-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA2-RB | 905 | CG9273-RB | 102..839 | 17..754 | 3690 | 100 | Plus |
RPA2-RA | 963 | CG9273-RA | 102..839 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20925264..20925850 | 678..92 | 2935 | 100 | Minus |
2L | 23513712 | 2L | 20925099..20925174 | 754..679 | 380 | 100 | Minus |
2L | 23513712 | 2L | 20925913..20925975 | 92..30 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6359..6412 | 56..2 | 119 | 73.2 | Minus |
BO04216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:54 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:41 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 94..839 | 10..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:15 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 102..839 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:54 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 94..839 | 10..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:37 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA2-RA | 102..839 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:37 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20925097..20925174 | 679..756 | 97 | <- | Minus |
2L | 20925264..20925850 | 92..678 | 100 | <- | Minus |
2L | 20925914..20925975 | 30..91 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:15 Download gff for
BO04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20925097..20925174 | 679..756 | 97 | <- | Minus |
arm_2L | 20925264..20925850 | 92..678 | 100 | <- | Minus |
arm_2L | 20925914..20925975 | 30..91 | 100 | <- | Minus |
BO04216.pep Sequence
Translation from 16 to 772
> BO04216.pep
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMASFL
DH
BO04216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA2-PB | 246 | CG9273-PB | 1..246 | 1..246 | 1250 | 100 | Plus |
RPA2-PA | 246 | CG9273-PA | 1..246 | 1..246 | 1250 | 100 | Plus |