Clone Sequence Records
BO04217.3prime Sequence
740 bp (739 high quality bases) assembled on 2005-12-01
> BO04217.3prime
ATGGTCTAGAAAGCTTGCCTTATCCCGGCTATTGGACATCAGGGCTAGGT
TGCCAAAGGAAGATCCAGCGGACGCTGGCTCGGGGGTGGGGTCAAATGCA
CGGTTGTCCTCAAGGATGATGGTGGTGCGGGGATAGTGATCCAATTGCAC
GAACAGATAACGATACTCCAGTTTACCAGAGTCACTCCTTCTGGACTCCA
GCTGCACGGTGGCCTTGTTCCTCAAGCCCTGCACATAAAACTGCATCCGC
ATGTGGGGCTTTCCATTGCGCTCGTAGCTCGAGTGCGCCACATGCTGTCT
GCGACCGCGCCTGGATGTCTCGCCGAATCCCTTGATGGGCGCACCAATTG
CATCCTGTACCCGCGGATCTTCGACCACACGTCTTAACGCGTCCGCGTAT
ATATTGTTCGGGCTTTCGCTGGAGAATAGCTCTCGGAATATGGCAAAGAA
CATCACGCAGGTCACCCCTAATCCGGCGATTATAATCGCCGTATAACTGG
CCGTCTTGGTGTTCTCCTTGATCTTCTCGCCAATGGGGCGCACATCCGTC
GACACCTGGGTGTTATCCTGCGATCTTTGAAGGGATCCGCCGCCATCGCG
CGACGCTTCCTGTCGCAAATGTGGACTCCAGTGCATCGCCGCCGCACATT
TTAACCTGGCAAAGTTGGTGGGCAACAAATTTTGCCGCTGAGTGACCAAA
TTGCGCAATAAAGCTAGCCGTGACATGTCGACTGATAACT
BO04217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 711 | CG7382-RA | 1..708 | 726..19 | 3440 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..792 | 726..19 | 3480 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 187..597 | 1995 | 99 | Plus |
2L | 23513712 | 2L | 5518989..5519157 | 19..187 | 845 | 100 | Plus |
2L | 23513712 | 2L | 5519683..5519812 | 597..726 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:19:17 has no hits.
BO04217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:57 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 18..726 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:09 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 18..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:59 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 13..735 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:59 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 13..735 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:59 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518984..5519156 | 13..186 | 98 | <- | Plus |
2L | 5519212..5519621 | 187..596 | 99 | <- | Plus |
2L | 5519683..5519821 | 597..735 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:59 Download gff for
BO04217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5518984..5519156 | 13..186 | 98 | <- | Plus |
arm_2L | 5519212..5519621 | 187..596 | 99 | <- | Plus |
arm_2L | 5519683..5519821 | 597..735 | 97 | | Plus |
BO04217.5prime Sequence
740 bp (739 high quality bases) assembled on 2005-12-01
> BO04217.5prime
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGGCAAGCTTTCTAGACC
BO04217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 711 | CG7382-RA | 1..708 | 17..724 | 3440 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..792 | 17..724 | 3480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 556..146 | 1995 | 99 | Minus |
2L | 23513712 | 2L | 5518989..5519157 | 724..556 | 845 | 100 | Minus |
2L | 23513712 | 2L | 5519683..5519812 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:02:58 has no hits.
BO04217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:58 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:10 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:15 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:02 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 8..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:02 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518984..5519156 | 557..730 | 98 | <- | Minus |
2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
2L | 5519683..5519821 | 8..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:15 Download gff for
BO04217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
arm_2L | 5518984..5519156 | 557..730 | 98 | <- | Minus |
arm_2L | 5519683..5519821 | 8..146 | 97 | | Minus |
BO04217.complete Sequence
742 bp (742 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629671
> BO04217.complete
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGGCAAGCTTTCTAGACCAT
BO04217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 711 | CG7382-PA | 1..708 | 17..724 | 3480 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..792 | 17..724 | 3480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 556..146 | 1995 | 99 | Minus |
2L | 23513712 | 2L | 5518989..5519157 | 724..556 | 845 | 100 | Minus |
2L | 23513712 | 2L | 5519683..5519812 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:50:06 has no hits.
BO04217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:55 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:42 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 69..790 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:10 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 85..792 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:55 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 69..790 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:07 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 85..792 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:07 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518987..5519156 | 557..726 | 98 | <- | Minus |
2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
2L | 5519683..5519812 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:10 Download gff for
BO04217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5519683..5519812 | 17..146 | 100 | | Minus |
arm_2L | 5518987..5519156 | 557..726 | 98 | <- | Minus |
arm_2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
BO04217.pep Sequence
Translation from 16 to 742
> BO04217.pep
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDKASFLDH
BO04217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 236 | CG7382-PA | 1..236 | 1..236 | 1212 | 100 | Plus |