Clone BO04217 Report

Search the DGRC for BO04217

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG7382-RA
Protein status:BO04217.pep: validated full length
Sequenced Size:742

Clone Sequence Records

BO04217.3prime Sequence

740 bp (739 high quality bases) assembled on 2005-12-01

> BO04217.3prime
ATGGTCTAGAAAGCTTGCCTTATCCCGGCTATTGGACATCAGGGCTAGGT
TGCCAAAGGAAGATCCAGCGGACGCTGGCTCGGGGGTGGGGTCAAATGCA
CGGTTGTCCTCAAGGATGATGGTGGTGCGGGGATAGTGATCCAATTGCAC
GAACAGATAACGATACTCCAGTTTACCAGAGTCACTCCTTCTGGACTCCA
GCTGCACGGTGGCCTTGTTCCTCAAGCCCTGCACATAAAACTGCATCCGC
ATGTGGGGCTTTCCATTGCGCTCGTAGCTCGAGTGCGCCACATGCTGTCT
GCGACCGCGCCTGGATGTCTCGCCGAATCCCTTGATGGGCGCACCAATTG
CATCCTGTACCCGCGGATCTTCGACCACACGTCTTAACGCGTCCGCGTAT
ATATTGTTCGGGCTTTCGCTGGAGAATAGCTCTCGGAATATGGCAAAGAA
CATCACGCAGGTCACCCCTAATCCGGCGATTATAATCGCCGTATAACTGG
CCGTCTTGGTGTTCTCCTTGATCTTCTCGCCAATGGGGCGCACATCCGTC
GACACCTGGGTGTTATCCTGCGATCTTTGAAGGGATCCGCCGCCATCGCG
CGACGCTTCCTGTCGCAAATGTGGACTCCAGTGCATCGCCGCCGCACATT
TTAACCTGGCAAAGTTGGTGGGCAACAAATTTTGCCGCTGAGTGACCAAA
TTGCGCAATAAAGCTAGCCGTGACATGTCGACTGATAACT

BO04217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 711 CG7382-RA 1..708 726..19 3440 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..792 726..19 3480 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 187..597 1995 99 Plus
2L 23513712 2L 5518989..5519157 19..187 845 100 Plus
2L 23513712 2L 5519683..5519812 597..726 650 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:19:17 has no hits.

BO04217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:57 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 18..726 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:09 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 18..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:59 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 13..735 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:59 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 13..735 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:59 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5518984..5519156 13..186 98 <- Plus
2L 5519212..5519621 187..596 99 <- Plus
2L 5519683..5519821 597..735 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:59 Download gff for BO04217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5518984..5519156 13..186 98 <- Plus
arm_2L 5519212..5519621 187..596 99 <- Plus
arm_2L 5519683..5519821 597..735 97   Plus

BO04217.5prime Sequence

740 bp (739 high quality bases) assembled on 2005-12-01

> BO04217.5prime
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGGCAAGCTTTCTAGACC

BO04217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 711 CG7382-RA 1..708 17..724 3440 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..792 17..724 3480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 556..146 1995 99 Minus
2L 23513712 2L 5518989..5519157 724..556 845 100 Minus
2L 23513712 2L 5519683..5519812 146..17 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:02:58 has no hits.

BO04217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:58 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..725 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:10 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:15 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 8..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:02 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 8..730 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:02 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5518984..5519156 557..730 98 <- Minus
2L 5519212..5519621 147..556 99 <- Minus
2L 5519683..5519821 8..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:15 Download gff for BO04217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5519212..5519621 147..556 99 <- Minus
arm_2L 5518984..5519156 557..730 98 <- Minus
arm_2L 5519683..5519821 8..146 97   Minus

BO04217.complete Sequence

742 bp (742 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629671

> BO04217.complete
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGGCAAGCTTTCTAGACCAT

BO04217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 711 CG7382-PA 1..708 17..724 3480 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..792 17..724 3480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 556..146 1995 99 Minus
2L 23513712 2L 5518989..5519157 724..556 845 100 Minus
2L 23513712 2L 5519683..5519812 146..17 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:50:06 has no hits.

BO04217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:55 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:42 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 69..790 8..730 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:10 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 85..792 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:55 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 69..790 8..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:07 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 85..792 17..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:07 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518987..5519156 557..726 98 <- Minus
2L 5519212..5519621 147..556 99 <- Minus
2L 5519683..5519812 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:10 Download gff for BO04217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5519683..5519812 17..146 100   Minus
arm_2L 5518987..5519156 557..726 98 <- Minus
arm_2L 5519212..5519621 147..556 99 <- Minus

BO04217.pep Sequence

Translation from 16 to 742

> BO04217.pep
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDKASFLDH

BO04217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 236 CG7382-PA 1..236 1..236 1212 100 Plus