Clone BO04219 Report

Search the DGRC for BO04219

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptHipHop-RA
Protein status:BO04219.pep: validated full length
Sequenced Size:697

Clone Sequence Records

BO04219.3prime Sequence

695 bp (694 high quality bases) assembled on 2005-12-01

> BO04219.3prime
ATGGTCTAGAAAGCTTGCACCACCTGTGGTTCCCATCAAGTAAATATCCA
TGGACTGCTTGTCCAGGACGGTCGGGCGCCTCTTTGGAATCGGCTGAATG
TGCGGCAGTCGCGTGCCATTCACGGCGTTCAAACTGAGATTCGAGTTGGG
GTCGTAGTCGTCACAATCCGGAGTAGTCTGGGCCAAGCTCAGCCTCTGCG
ATGGTTTCACCATTAGGTTTGCCCTCGCAAGCTGGCGTTTTTGGATCGCT
GCAGCGCTGGTAGTAGGCACATTGTCTGAATCTTGACTTAAGCTTCTGTG
GGAGCACAGCTCTTCATCGGGAGTCACAATGCCCCCCTCACTGTATGAGG
CACCGAATTCGGAACTTTGGCCAGAGACATGCAAAGAGGGCGCACTTTGG
TGCGACGATGACTGACTGCCGCTGACGTCCGTAATGCTCGCGGCAGTCTC
CCTGGCCATCTTGTGCCGTTTGGCATTGTCGTTCTTCTTCCGGTAGAGTC
GCACCAGGTCCGTGTAGCACTTGCAGCAGATGAGGTTGCCCGCCCGAATT
TCGCTGTTCAGCAAACAGGCGAAGCGCACCAAATATTTGTTGTTCAGTTG
GCGATACGGCTTCCGCAGCGTGTGGTTGCCGACTGCGCAGAATCTCCGCT
CAACGCGCGAGCCCTCGTCAATGGAGGCCATGTCGACTGATAACT

BO04219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6874-PA 666 l(3)neo26-RA 1..663 681..19 3265 99.6 Minus
CG6874-PB 666 l(3)neo26-RB 1..663 681..19 3265 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
HipHop-RB 1183 CG6874-RB 137..799 681..19 3285 99.7 Minus
HipHop-RA 1124 CG6874-RA 78..740 681..19 3285 99.7 Minus
ms(3)K81-RA 711 CG14251-RA 513..597 159..75 200 82.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18821307..18821969 681..19 3285 99.7 Minus
3R 32079331 3R 26876364..26876448 159..75 200 82.4 Minus
Blast to na_te.dros performed on 2015-02-12 06:16:24 has no hits.

BO04219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:01 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6874-PA 1..666 18..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:14 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6874-PB 1..666 18..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:33 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 74..740 19..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:22 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 74..740 19..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:22 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18821296..18821969 19..691 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:33 Download gff for BO04219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18814396..18815069 19..691 99   Minus

BO04219.5prime Sequence

695 bp (694 high quality bases) assembled on 2005-12-01

> BO04219.5prime
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACC

BO04219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6874-PA 666 l(3)neo26-RA 1..663 17..679 3265 99.6 Plus
CG6874-PB 666 l(3)neo26-RB 1..663 17..679 3265 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
HipHop-RB 1183 CG6874-RB 137..799 17..679 3285 99.7 Plus
HipHop-RA 1124 CG6874-RA 78..740 17..679 3285 99.7 Plus
ms(3)K81-RA 711 CG14251-RA 513..597 539..623 200 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18821307..18821969 17..679 3285 99.7 Plus
3R 32079331 3R 26876364..26876448 539..623 200 82.4 Plus
Blast to na_te.dros performed on 2015-02-13 13:14:43 has no hits.

BO04219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:02 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6874-PA 1..666 17..680 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:15 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6874-PB 1..666 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:31 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 74..740 9..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:23 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 74..740 9..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:23 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18821296..18821969 7..679 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:31 Download gff for BO04219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18814396..18815069 7..679 99   Plus

BO04219.complete Sequence

697 bp (697 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629672

> BO04219.complete
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACCAT

BO04219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
HipHop-RB 666 CG6874-PB 1..663 17..679 3285 99.7 Plus
HipHop-RA 666 CG6874-PA 1..663 17..679 3285 99.7 Plus
ms(3)K81-RA 555 CG14251-PA 409..493 539..623 200 82.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
HipHop-RB 1183 CG6874-RB 137..799 17..679 3285 99.7 Plus
HipHop-RA 1124 CG6874-RA 78..740 17..679 3285 99.7 Plus
ms(3)K81-RA 711 CG14251-RA 513..597 539..623 200 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18821307..18821969 17..679 3285 99.7 Plus
3R 32079331 3R 26876364..26876448 539..623 200 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 07:17:33 has no hits.

BO04219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:03 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo26-RB 1..666 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:20 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo26-RB 32..705 7..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:07 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 78..740 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:03 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo26-RB 32..705 7..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:39 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
HipHop-RA 78..740 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:39 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18821307..18821969 17..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:07 Download gff for BO04219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18814407..18815069 17..681 99   Plus

BO04219.pep Sequence

Translation from 16 to 697

> BO04219.pep
MASIDEGSRVERRFCAVGNHTLRKPYRQLNNKYLVRFACLLNSEIRAGNL
ICCKCYTDLVRLYRKKNDNAKRHKMARETAASITDVSGSQSSSHQSAPSL
HVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDNVPTTSAAAIQKRQ
LARANLMVKPSQRLSLAQTTPDCDDYDPNSNLSLNAVNGTRLPHIQPIPK
RRPTVLDKQSMDIYLMGTTGGASFLDH

BO04219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
HipHop-PB 221 CG6874-PB 1..221 1..221 1145 100 Plus
HipHop-PA 221 CG6874-PA 1..221 1..221 1145 100 Plus
ms(3)K81-PA 184 CG14251-PA 8..184 11..221 396 45.8 Plus