Clone Sequence Records
BO04219.3prime Sequence
695 bp (694 high quality bases) assembled on 2005-12-01
> BO04219.3prime
ATGGTCTAGAAAGCTTGCACCACCTGTGGTTCCCATCAAGTAAATATCCA
TGGACTGCTTGTCCAGGACGGTCGGGCGCCTCTTTGGAATCGGCTGAATG
TGCGGCAGTCGCGTGCCATTCACGGCGTTCAAACTGAGATTCGAGTTGGG
GTCGTAGTCGTCACAATCCGGAGTAGTCTGGGCCAAGCTCAGCCTCTGCG
ATGGTTTCACCATTAGGTTTGCCCTCGCAAGCTGGCGTTTTTGGATCGCT
GCAGCGCTGGTAGTAGGCACATTGTCTGAATCTTGACTTAAGCTTCTGTG
GGAGCACAGCTCTTCATCGGGAGTCACAATGCCCCCCTCACTGTATGAGG
CACCGAATTCGGAACTTTGGCCAGAGACATGCAAAGAGGGCGCACTTTGG
TGCGACGATGACTGACTGCCGCTGACGTCCGTAATGCTCGCGGCAGTCTC
CCTGGCCATCTTGTGCCGTTTGGCATTGTCGTTCTTCTTCCGGTAGAGTC
GCACCAGGTCCGTGTAGCACTTGCAGCAGATGAGGTTGCCCGCCCGAATT
TCGCTGTTCAGCAAACAGGCGAAGCGCACCAAATATTTGTTGTTCAGTTG
GCGATACGGCTTCCGCAGCGTGTGGTTGCCGACTGCGCAGAATCTCCGCT
CAACGCGCGAGCCCTCGTCAATGGAGGCCATGTCGACTGATAACT
BO04219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6874-PA | 666 | l(3)neo26-RA | 1..663 | 681..19 | 3265 | 99.6 | Minus |
CG6874-PB | 666 | l(3)neo26-RB | 1..663 | 681..19 | 3265 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HipHop-RB | 1183 | CG6874-RB | 137..799 | 681..19 | 3285 | 99.7 | Minus |
HipHop-RA | 1124 | CG6874-RA | 78..740 | 681..19 | 3285 | 99.7 | Minus |
ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 159..75 | 200 | 82.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18821307..18821969 | 681..19 | 3285 | 99.7 | Minus |
3R | 32079331 | 3R | 26876364..26876448 | 159..75 | 200 | 82.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:16:24 has no hits.
BO04219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:01 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6874-PA | 1..666 | 18..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:14 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6874-PB | 1..666 | 18..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:33 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 74..740 | 19..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:22 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 74..740 | 19..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:22 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18821296..18821969 | 19..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:33 Download gff for
BO04219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18814396..18815069 | 19..691 | 99 | | Minus |
BO04219.5prime Sequence
695 bp (694 high quality bases) assembled on 2005-12-01
> BO04219.5prime
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACC
BO04219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6874-PA | 666 | l(3)neo26-RA | 1..663 | 17..679 | 3265 | 99.6 | Plus |
CG6874-PB | 666 | l(3)neo26-RB | 1..663 | 17..679 | 3265 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HipHop-RB | 1183 | CG6874-RB | 137..799 | 17..679 | 3285 | 99.7 | Plus |
HipHop-RA | 1124 | CG6874-RA | 78..740 | 17..679 | 3285 | 99.7 | Plus |
ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 539..623 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18821307..18821969 | 17..679 | 3285 | 99.7 | Plus |
3R | 32079331 | 3R | 26876364..26876448 | 539..623 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:14:43 has no hits.
BO04219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:02 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6874-PA | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:15 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6874-PB | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:31 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 74..740 | 9..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:23 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 74..740 | 9..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:23 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18821296..18821969 | 7..679 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:31 Download gff for
BO04219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18814396..18815069 | 7..679 | 99 | | Plus |
BO04219.complete Sequence
697 bp (697 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629672
> BO04219.complete
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACCAT
BO04219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HipHop-RB | 666 | CG6874-PB | 1..663 | 17..679 | 3285 | 99.7 | Plus |
HipHop-RA | 666 | CG6874-PA | 1..663 | 17..679 | 3285 | 99.7 | Plus |
ms(3)K81-RA | 555 | CG14251-PA | 409..493 | 539..623 | 200 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HipHop-RB | 1183 | CG6874-RB | 137..799 | 17..679 | 3285 | 99.7 | Plus |
HipHop-RA | 1124 | CG6874-RA | 78..740 | 17..679 | 3285 | 99.7 | Plus |
ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 539..623 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18821307..18821969 | 17..679 | 3285 | 99.7 | Plus |
3R | 32079331 | 3R | 26876364..26876448 | 539..623 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:17:33 has no hits.
BO04219.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:03 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo26-RB | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:20 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo26-RB | 32..705 | 7..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:07 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 78..740 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:03 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo26-RB | 32..705 | 7..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:39 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HipHop-RA | 78..740 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:39 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18821307..18821969 | 17..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:07 Download gff for
BO04219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18814407..18815069 | 17..681 | 99 | | Plus |
BO04219.pep Sequence
Translation from 16 to 697
> BO04219.pep
MASIDEGSRVERRFCAVGNHTLRKPYRQLNNKYLVRFACLLNSEIRAGNL
ICCKCYTDLVRLYRKKNDNAKRHKMARETAASITDVSGSQSSSHQSAPSL
HVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDNVPTTSAAAIQKRQ
LARANLMVKPSQRLSLAQTTPDCDDYDPNSNLSLNAVNGTRLPHIQPIPK
RRPTVLDKQSMDIYLMGTTGGASFLDH
BO04219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HipHop-PB | 221 | CG6874-PB | 1..221 | 1..221 | 1145 | 100 | Plus |
HipHop-PA | 221 | CG6874-PA | 1..221 | 1..221 | 1145 | 100 | Plus |
ms(3)K81-PA | 184 | CG14251-PA | 8..184 | 11..221 | 396 | 45.8 | Plus |