Clone Sequence Records
BO04220.3prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-01
> BO04220.3prime
ATGGTCTAGAAAGCTTGCAGGCCAGGATCGCTTGGCTTCGTGTCCCTCGT
ACTTTCCACGGTACTTGAGACCGGTGACTAGGGTGGAGCTCTTGGGGAAA
GCCGTTTTGCCGTCGAATTTGGTATCTGTCTCGGGATGGAATCGCACGTA
CTCGTACTGGATGTGCAAATTCTCCGGCAGCTCGATGCGCTTCAGTGCAT
CAAACGGCACGGTGGTGTCCACAGCTGTTTGGTAGAAAGCGATAACATCG
CTGACGGTGCGCAGTTCATGTACCTGGGAGTTGGGCACTCCGTGCTGCAG
CTCCTGGAAGCACGCGTTCAGGAATTCGAATTTCTCGGAGAGATTCCCCA
ACTGGTCGGATTTCAGTTGAAGCGAGGCGGCTACGGTTCGAATACGTTCG
GCGGCATCTGCAGGTGGGGAGTACGGCTTATGGGGACGCAAGAAGCCCTT
GGCGGCGATGGACTCGCCGACAGCTGAAATGGTGCTGGTTTTGACGGGCT
TTGCTTTTGCGGCCTTGGCGGCGGAGGCAAAACTCCTATGCAGGCTTCCC
GCAAGAATTAGGGTTTTACGTAAAATCGCTGCCATGTCGACTGATAACT
BO04220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8612-PA | 570 | mRpL50-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL50-RA | 739 | CG8612-RA | 45..611 | 585..19 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7243208..7243635 | 19..446 | 2140 | 100 | Plus |
3L | 28110227 | 3L | 7243694..7243803 | 446..555 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:48:13 has no hits.
BO04220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:03 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8612-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:17 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8612-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:35 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 35..611 | 19..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:35 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 35..611 | 19..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:35 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7243694..7243803 | 446..555 | 100 | <- | Plus |
3L | 7243208..7243634 | 19..445 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:35 Download gff for
BO04220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7236308..7236734 | 19..445 | 100 | <- | Plus |
arm_3L | 7236794..7236903 | 446..555 | 100 | <- | Plus |
BO04220.5prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-01
> BO04220.5prime
GAAGTTATCAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTG
CGGGAAGCCTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCA
AAGCCCGTCAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGC
CAAGGGCTTCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCG
CCGAACGTATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAG
TTGGGGAATCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGA
GCTGCAGCACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCA
GCGATGTTATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTT
GATGCACTGAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGA
GTACGTGCGATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGG
CTTTCCCCAAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAG
TACGAGGGACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACC
BO04220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8612-PA | 570 | mRpL50-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL50-RA | 739 | CG8612-RA | 45..611 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7243208..7243635 | 583..156 | 2140 | 100 | Minus |
3L | 28110227 | 3L | 7243694..7243803 | 156..47 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:00:19 has no hits.
BO04220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:04 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8612-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:18 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8612-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:08 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 35..611 | 4..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:19 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 35..611 | 4..583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:19 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7243208..7243634 | 157..583 | 100 | <- | Minus |
3L | 7243694..7243803 | 47..156 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:08 Download gff for
BO04220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7236308..7236734 | 157..583 | 100 | <- | Minus |
arm_3L | 7236794..7236903 | 47..156 | 100 | <- | Minus |
BO04220.complete Sequence
601 bp (601 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629673
> BO04220.complete
GAAGTTATCAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTG
CGGGAAGCCTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCA
AAGCCCGTCAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGC
CAAGGGCTTCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCG
CCGAACGTATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAG
TTGGGGAATCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGA
GCTGCAGCACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCA
GCGATGTTATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTT
GATGCACTGAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGA
GTACGTGCGATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGG
CTTTCCCCAAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAG
TACGAGGGACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACCA
T
BO04220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL50-RA | 570 | CG8612-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL50-RA | 739 | CG8612-RA | 45..611 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7243208..7243635 | 583..156 | 2140 | 100 | Minus |
3L | 28110227 | 3L | 7243694..7243803 | 156..47 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:20:44 has no hits.
BO04220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:05 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:22 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 34..610 | 4..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:32:51 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 45..611 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:05 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 34..610 | 4..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:18 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL50-RA | 45..611 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:18 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7243206..7243634 | 157..585 | 99 | <- | Minus |
3L | 7243694..7243803 | 47..156 | 100 | <- | Minus |
3L | 7243860..7243889 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:32:51 Download gff for
BO04220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7236306..7236734 | 157..585 | 99 | <- | Minus |
arm_3L | 7236794..7236903 | 47..156 | 100 | <- | Minus |
arm_3L | 7236960..7236989 | 17..46 | 100 | | Minus |
BO04220.pep Sequence
Translation from 16 to 601
> BO04220.pep
MAAILRKTLILAGSLHRSFASAAKAAKAKPVKTSTISAVGESIAAKGFLR
PHKPYSPPADAAERIRTVAASLQLKSDQLGNLSEKFEFLNACFQELQHGV
PNSQVHELRTVSDVIAFYQTAVDTTVPFDALKRIELPENLHIQYEYVRFH
PETDTKFDGKTAFPKSSTLVTGLKYRGKYEGHEAKRSWPASFLDH
BO04220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL50-PA | 189 | CG8612-PA | 1..189 | 1..189 | 966 | 100 | Plus |