Clone BO04220 Report

Search the DGRC for BO04220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL50-RA
Protein status:BO04220.pep: validated full length
Sequenced Size:601

Clone Sequence Records

BO04220.3prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-01

> BO04220.3prime
ATGGTCTAGAAAGCTTGCAGGCCAGGATCGCTTGGCTTCGTGTCCCTCGT
ACTTTCCACGGTACTTGAGACCGGTGACTAGGGTGGAGCTCTTGGGGAAA
GCCGTTTTGCCGTCGAATTTGGTATCTGTCTCGGGATGGAATCGCACGTA
CTCGTACTGGATGTGCAAATTCTCCGGCAGCTCGATGCGCTTCAGTGCAT
CAAACGGCACGGTGGTGTCCACAGCTGTTTGGTAGAAAGCGATAACATCG
CTGACGGTGCGCAGTTCATGTACCTGGGAGTTGGGCACTCCGTGCTGCAG
CTCCTGGAAGCACGCGTTCAGGAATTCGAATTTCTCGGAGAGATTCCCCA
ACTGGTCGGATTTCAGTTGAAGCGAGGCGGCTACGGTTCGAATACGTTCG
GCGGCATCTGCAGGTGGGGAGTACGGCTTATGGGGACGCAAGAAGCCCTT
GGCGGCGATGGACTCGCCGACAGCTGAAATGGTGCTGGTTTTGACGGGCT
TTGCTTTTGCGGCCTTGGCGGCGGAGGCAAAACTCCTATGCAGGCTTCCC
GCAAGAATTAGGGTTTTACGTAAAATCGCTGCCATGTCGACTGATAACT

BO04220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8612-PA 570 mRpL50-RA 1..567 585..19 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL50-RA 739 CG8612-RA 45..611 585..19 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7243208..7243635 19..446 2140 100 Plus
3L 28110227 3L 7243694..7243803 446..555 550 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:48:13 has no hits.

BO04220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:03 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8612-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:17 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8612-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:35 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 35..611 19..598 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:35 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 35..611 19..598 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:35 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7243694..7243803 446..555 100 <- Plus
3L 7243208..7243634 19..445 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:35 Download gff for BO04220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7236308..7236734 19..445 100 <- Plus
arm_3L 7236794..7236903 446..555 100 <- Plus

BO04220.5prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-01

> BO04220.5prime
GAAGTTATCAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTG
CGGGAAGCCTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCA
AAGCCCGTCAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGC
CAAGGGCTTCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCG
CCGAACGTATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAG
TTGGGGAATCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGA
GCTGCAGCACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCA
GCGATGTTATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTT
GATGCACTGAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGA
GTACGTGCGATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGG
CTTTCCCCAAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAG
TACGAGGGACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACC

BO04220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8612-PA 570 mRpL50-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL50-RA 739 CG8612-RA 45..611 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7243208..7243635 583..156 2140 100 Minus
3L 28110227 3L 7243694..7243803 156..47 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:00:19 has no hits.

BO04220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:04 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8612-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:18 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8612-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:08 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 35..611 4..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:19 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 35..611 4..583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:19 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7243208..7243634 157..583 100 <- Minus
3L 7243694..7243803 47..156 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:08 Download gff for BO04220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7236308..7236734 157..583 100 <- Minus
arm_3L 7236794..7236903 47..156 100 <- Minus

BO04220.complete Sequence

601 bp (601 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629673

> BO04220.complete
GAAGTTATCAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTG
CGGGAAGCCTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCA
AAGCCCGTCAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGC
CAAGGGCTTCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCG
CCGAACGTATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAG
TTGGGGAATCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGA
GCTGCAGCACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCA
GCGATGTTATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTT
GATGCACTGAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGA
GTACGTGCGATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGG
CTTTCCCCAAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAG
TACGAGGGACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACCA
T

BO04220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL50-RA 570 CG8612-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL50-RA 739 CG8612-RA 45..611 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7243208..7243635 583..156 2140 100 Minus
3L 28110227 3L 7243694..7243803 156..47 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:20:44 has no hits.

BO04220.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:05 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:22 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 34..610 4..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:32:51 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 45..611 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:05 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 34..610 4..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:18 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL50-RA 45..611 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:18 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7243206..7243634 157..585 99 <- Minus
3L 7243694..7243803 47..156 100 <- Minus
3L 7243860..7243889 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:32:51 Download gff for BO04220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7236306..7236734 157..585 99 <- Minus
arm_3L 7236794..7236903 47..156 100 <- Minus
arm_3L 7236960..7236989 17..46 100   Minus

BO04220.pep Sequence

Translation from 16 to 601

> BO04220.pep
MAAILRKTLILAGSLHRSFASAAKAAKAKPVKTSTISAVGESIAAKGFLR
PHKPYSPPADAAERIRTVAASLQLKSDQLGNLSEKFEFLNACFQELQHGV
PNSQVHELRTVSDVIAFYQTAVDTTVPFDALKRIELPENLHIQYEYVRFH
PETDTKFDGKTAFPKSSTLVTGLKYRGKYEGHEAKRSWPASFLDH

BO04220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL50-PA 189 CG8612-PA 1..189 1..189 966 100 Plus