Clone Sequence Records
BO04221.3prime Sequence
860 bp (838 high quality bases) assembled on 2005-12-01
> BO04221.3prime
ATGGTCTAGAAAGCTTGCGTCAGAATCCGAGTCGGAATTACTGTCCTTGG
CCGTGTCGCGCGCTTGTGTAGGTGGATCATAGATGTGGAGGCTTTTGCGC
CAGATCTTCACGAGCCCATCGAAGGCGCGGCGGCTGTACTTTCCATACTT
GTTCGGGGTGCGCGGATGATCGCGAGTCCGCTCGTCCTTTGGCACCATTT
CCACATAGCGCTCGTAGGCGGCAGTATTCTTTCCGTAATCTATTTGCTTC
TGCCTGCGACTTAGGATGGCGGGATCGGCTTCGGTGTAGGAGGATGACGA
TGAGGTGGAGGACGTGTAGCTGTTGTGGCGCACCCGTTTCTCCTCCTTGT
GGGCGCGGAAGTTGCCAGACTTTTTTGAGTTCCTCGAATGGGGATTGTTG
CCGCCTTTGGGCGCAGCTGCATCTCCGTTGGCCGAGGAGTTGCTGCTGTT
TGGACTGTTGGAGCGACTGTTCTCGTTGCTGGGCGGCGTGAACGAGTGTC
GGCGCTTGTAGGGCGTTTTTAGCTTCTCCTCCTTGACCAGGCGCTCGAAC
TTTACCTCGTTGACGCCATCCAGGAACTCAAATGCCATCTCCCGGCCCTC
GCCATCTTTGGACTCCAGATTACCGTCGGCTGTCTCCTTTTTGGCCAAGG
AACCGCAGCTGGCAGCGCTGCTATTCAAGGAACTGGAGGCCTCGTCACTG
TGGCCAAACTCCGCGCGGACCTCCTGGGCCCAGCTCTGCATGGTGGGCTT
CACATCGATCGAAATGGAGGATGCTGAGGAATTCAGGCTGCCGGAGCCTT
TCTGCGGTGTGTTCTCCACGGACATGTGCTGATCCTCGCAGAGCATGTCG
ACTGATAACT
BO04221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11886-PA | 831 | Slbp-RA | 1..828 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..955 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152251..29152924 | 19..692 | 3370 | 100 | Plus |
| 3R | 32079331 | 3R | 29152983..29153141 | 690..848 | 795 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3033 | 481..243 | 151 | 57.8 | Minus |
BO04221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:05 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-PA | 1..831 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:20 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11886-PA | 1..831 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:34 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 19..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:19 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 19..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:19 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152251..29152922 | 19..690 | 100 | <- | Plus |
| 3R | 29152984..29153145 | 691..854 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:34 Download gff for
BO04221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24977973..24978644 | 19..690 | 100 | <- | Plus |
| arm_3R | 24978706..24978867 | 691..854 | 98 | | Plus |
BO04221.5prime Sequence
860 bp (763 high quality bases) assembled on 2005-12-01
> BO04221.5prime
GAAGTTATCAGTCGACATGCTCTGCGAGGATCAGCACATGTCCGTGGAGA
ACACACCGCAGAAAGGCTCCGGCAGCCTGAATTCCTCAGCATCCTCCATT
TCGATCGATGTGAAGCCCACCATGCAGAGCTGGGCCCAGGAGGTCCGCGC
GGAGTTTGGCCACAGTGACGAGGCCTCCAGTTCCTTGAATAGCAGCGCTG
CCAGCTGCGGTTCCTTGGCCAAAAAGGAGACAGCCGACGGTAATCTGGAG
TCCAAAGATGGCGAGGGCCGGGAGATGGCATTTGAGTTCCTGGATGGCGT
CAACGAGGTAAAGTTCGAGCGCCTGGTCAAGGAGGAGAAGCTAAAAACGC
CCTACAAGCGCCGACACTCGTTCACGCCGCCCAGCAACGAGAACAGTCGC
TCCAACAGTCCAAACAGCAGCAACTCCTCGGCCAACGGAGATGCAGCTGC
GCCCAAAGGCGGCAACAATCCCCATTCGAGGAACTCAAAAAAGTCTGGCA
ACTTCCGCGCCCACAAGGAGGAGAAACGGGTGCGCCACAACAGCTACACG
TCCTCCACCTCATCGTCATCCTCCTACACCGAAGCCGATCCCGCCATCCT
AAGTCGCAGGCAGAAGCAAATAGATTACGGAAAGAATACTGCCGCCTACG
AGCGCTATGTGGAAATGGTGCCAAAGGACGAGCGGACTCGCGATCATCCG
CGCACCCCGAACAAGTATGGAAAGTACAGCCGCCGCGCCTTCGATGGGCT
CGTGAAGATCTGGCGCAAAAGCCTCCACATCTATGATCCACCTACACAAG
CGCGCGACACGGCCAAGGACAGTAATTCCGACTCGGATTCTGACGCAAGC
TTTCTAGACC
BO04221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11886-PA | 831 | Slbp-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..955 | 15..844 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152251..29152924 | 844..171 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 29152983..29153141 | 173..15 | 795 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3033 | 382..620 | 151 | 57.8 | Plus |
BO04221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:06 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-PA | 1..831 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:22 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11886-PA | 1..831 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:05 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:16:34 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:16:34 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152251..29152922 | 173..844 | 100 | <- | Minus |
| 3R | 29152984..29153145 | 9..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:05 Download gff for
BO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24977973..24978644 | 173..844 | 100 | <- | Minus |
| arm_3R | 24978706..24978867 | 9..172 | 98 | | Minus |
BO04221.complete Sequence
862 bp (862 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629674
> BO04221.complete
GAAGTTATCAGTCGACATGCTCTGCGAGGATCAGCACATGTCCGTGGAGA
ACACACCGCAGAAAGGCTCCGGCAGCCTGAATTCCTCAGCATCCTCCATT
TCGATCGATGTGAAGCCCACCATGCAGAGCTGGGCCCAGGAGGTCCGCGC
GGAGTTTGGCCACAGTGACGAGGCCTCCAGTTCCTTGAATAGCAGCGCTG
CCAGCTGCGGTTCCTTGGCCAAAAAGGAGACAGCCGACGGTAATCTGGAG
TCCAAAGATGGCGAGGGCCGGGAGATGGCATTTGAGTTCCTGGATGGCGT
CAACGAGGTAAAGTTCGAGCGCCTGGTCAAGGAGGAGAAGCTAAAAACGC
CCTACAAGCGCCGACACTCGTTCACGCCGCCCAGCAACGAGAACAGTCGC
TCCAACAGTCCAAACAGCAGCAACTCCTCGGCCAACGGAGATGCAGCTGC
GCCCAAAGGCGGCAACAATCCCCATTCGAGGAACTCAAAAAAGTCTGGCA
ACTTCCGCGCCCACAAGGAGGAGAAACGGGTGCGCCACAACAGCTACACG
TCCTCCACCTCATCGTCATCCTCCTACACCGAAGCCGATCCCGCCATCCT
AAGTCGCAGGCAGAAGCAAATAGATTACGGAAAGAATACTGCCGCCTACG
AGCGCTATGTGGAAATGGTGCCAAAGGACGAGCGGACTCGCGATCATCCG
CGCACCCCGAACAAGTATGGAAAGTACAGCCGCCGCGCCTTCGATGGGCT
CGTGAAGATCTGGCGCAAAAGCCTCCACATCTATGATCCACCTACACAAG
CGCGCGACACGGCCAAGGACAGTAATTCCGACTCGGATTCTGACGCAAGC
TTTCTAGACCAT
BO04221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 831 | CG11886-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..955 | 15..844 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152251..29152924 | 844..171 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 29152983..29153141 | 173..15 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3033 | 382..620 | 151 | 57.8 | Plus |
BO04221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:56 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 1..831 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:44 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 103..936 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:24 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 128..955 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:56 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 103..936 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:13 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 128..955 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:13 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152249..29152922 | 173..846 | 99 | <- | Minus |
| 3R | 29152984..29153139 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:24 Download gff for
BO04221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24977971..24978644 | 173..846 | 99 | <- | Minus |
| arm_3R | 24978706..24978861 | 17..172 | 100 | | Minus |
BO04221.pep Sequence
Translation from 16 to 862
> BO04221.pep
MLCEDQHMSVENTPQKGSGSLNSSASSISIDVKPTMQSWAQEVRAEFGHS
DEASSSLNSSAASCGSLAKKETADGNLESKDGEGREMAFEFLDGVNEVKF
ERLVKEEKLKTPYKRRHSFTPPSNENSRSNSPNSSNSSANGDAAAPKGGN
NPHSRNSKKSGNFRAHKEEKRVRHNSYTSSTSSSSSYTEADPAILSRRQK
QIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKIWR
KSLHIYDPPTQARDTAKDSNSDSDSDASFLDH
BO04221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-PA | 276 | CG11886-PA | 1..276 | 1..276 | 1436 | 100 | Plus |
