Clone BO04222 Report

Search the DGRC for BO04222

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG5919-RA
Protein status:BO04222.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO04222.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-01

> BO04222.3prime
ATGGTCTAGAAAGCTTGCAAAGCGCTGAATATTACTCAAGTCCTCAAATT
GCTCCAGCTGGTGCAAATTGTCCCACCAGAGTTTCAATCGATGCTGCAGA
ATCAGAGAGAACCAGGGTGTCAGCGGGGCACTAAACTTCGCCACCGCCTC
GTCGATCTTATCGCGGCGCAAGTAGCGCACCTCACTGACCTCGTTGCTAT
TTGGACGCAGCGTCACGTCTTTTTGCAGGAACAGGATGTAGTCTATCTCG
TGCTCGCCCCACACGCCGTCGCCCGTGTCTGCGTAGTGGATGCGGGTCAG
GTAGCGAAAGTCCTGTGGCTGCAGTTCCTCTGTGGGAATGCCCAGTTCGT
AGTTGAGACGTCGTTGAGCGGCCACACGGATGCCCTGTGCGTTGCGCTCC
TGACGTTCCTGTTCGATTTCGTAAAGCGGATGGCTGCAGCACGCGTTGGT
GTAGGTGTTTGGGAAGGTTATCTTGTGAGACGATCGCTTCTGCACTAGCA
TCTCTCCCTGAGAATTGAAGAGAAAAACACTGAAGGCGCGATGGAGCTTA
ACATCATTCGTCTCTGGATGCACACGGTGGCAGTCTGCCTTAGAGGCGGC
CCCAATGGCTTGGTCGTTGGCGTCAACCAGGATGCACTGTTCCTTTAGAG
CGTGAGCCTGCAGAGGATCGTGTACGGCGAACTCCGTGGGCACCTGGCGC
TGATGTTTCTGGCCCACCGCTGTCGTTGAGCAACCGCGCAGCCAGGATAC
GCGGGGCAACAGGAGATTCAAGCGAGAGGCCAACATGTCGACTGATAACT

BO04222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PA 771 CG5919-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..858 786..19 3840 100 Minus
CG5919-RA 1227 CG5919-RA 91..858 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271039 473..19 2275 100 Minus
3R 32079331 3R 21270216..21270530 786..472 1575 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:48:26 has no hits.

BO04222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:06 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:23 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:37 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..869 7..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:40 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..869 7..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:40 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21270216..21270530 472..786 100 -> Minus
3R 21270587..21271050 7..471 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:37 Download gff for BO04222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095938..17096252 472..786 100 -> Minus
arm_3R 17096309..17096772 7..471 98   Minus

BO04222.5prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-01

> BO04222.5prime
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTGCAAGCTTTCTAGACC

BO04222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PA 771 CG5919-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..858 17..784 3840 100 Plus
CG5919-RA 1227 CG5919-RA 91..858 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271039 330..784 2275 100 Plus
3R 32079331 3R 21270216..21270530 17..331 1575 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:11:46 has no hits.

BO04222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:07 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:24 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:09 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..869 17..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:15 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..869 17..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:15 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21270216..21270530 17..331 100 -> Plus
3R 21270587..21271050 332..796 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:09 Download gff for BO04222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095938..17096252 17..331 100 -> Plus
arm_3R 17096309..17096772 332..796 98   Plus

BO04222.complete Sequence

802 bp (802 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629675

> BO04222.complete
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTGCAAGCTTTCTAGACC
AT

BO04222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 771 CG5919-PB 1..768 17..784 3840 100 Plus
CG5919-RA 771 CG5919-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..858 17..784 3840 100 Plus
CG5919-RA 1227 CG5919-RA 91..858 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271039 330..784 2275 100 Plus
3R 32079331 3R 21270216..21270530 17..331 1575 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:51:30 has no hits.

BO04222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:57 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:46 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 80..858 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:33 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 96..858 22..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:58 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 80..858 17..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:08 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 96..858 22..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:08 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21270221..21270530 22..331 100 -> Plus
3R 21270587..21271039 332..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:33 Download gff for BO04222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095943..17096252 22..331 100 -> Plus
arm_3R 17096309..17096761 332..786 99   Plus

BO04222.pep Sequence

Translation from 16 to 802

> BO04222.pep
MLASRLNLLLPRVSWLRGCSTTAVGQKHQRQVPTEFAVHDPLQAHALKEQ
CILVDANDQAIGAASKADCHRVHPETNDVKLHRAFSVFLFNSQGEMLVQK
RSSHKITFPNTYTNACCSHPLYEIEQERQERNAQGIRVAAQRRLNYELGI
PTEELQPQDFRYLTRIHYADTGDGVWGEHEIDYILFLQKDVTLRPNSNEV
SEVRYLRRDKIDEAVAKFSAPLTPWFSLILQHRLKLWWDNLHQLEQFEDL
SNIQRFASFLDH

BO04222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PB 256 CG5919-PB 1..256 1..256 1359 100 Plus
CG5919-PA 256 CG5919-PA 1..256 1..256 1359 100 Plus