Clone Sequence Records
BO04222.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-01
> BO04222.3prime
ATGGTCTAGAAAGCTTGCAAAGCGCTGAATATTACTCAAGTCCTCAAATT
GCTCCAGCTGGTGCAAATTGTCCCACCAGAGTTTCAATCGATGCTGCAGA
ATCAGAGAGAACCAGGGTGTCAGCGGGGCACTAAACTTCGCCACCGCCTC
GTCGATCTTATCGCGGCGCAAGTAGCGCACCTCACTGACCTCGTTGCTAT
TTGGACGCAGCGTCACGTCTTTTTGCAGGAACAGGATGTAGTCTATCTCG
TGCTCGCCCCACACGCCGTCGCCCGTGTCTGCGTAGTGGATGCGGGTCAG
GTAGCGAAAGTCCTGTGGCTGCAGTTCCTCTGTGGGAATGCCCAGTTCGT
AGTTGAGACGTCGTTGAGCGGCCACACGGATGCCCTGTGCGTTGCGCTCC
TGACGTTCCTGTTCGATTTCGTAAAGCGGATGGCTGCAGCACGCGTTGGT
GTAGGTGTTTGGGAAGGTTATCTTGTGAGACGATCGCTTCTGCACTAGCA
TCTCTCCCTGAGAATTGAAGAGAAAAACACTGAAGGCGCGATGGAGCTTA
ACATCATTCGTCTCTGGATGCACACGGTGGCAGTCTGCCTTAGAGGCGGC
CCCAATGGCTTGGTCGTTGGCGTCAACCAGGATGCACTGTTCCTTTAGAG
CGTGAGCCTGCAGAGGATCGTGTACGGCGAACTCCGTGGGCACCTGGCGC
TGATGTTTCTGGCCCACCGCTGTCGTTGAGCAACCGCGCAGCCAGGATAC
GCGGGGCAACAGGAGATTCAAGCGAGAGGCCAACATGTCGACTGATAACT
BO04222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PA | 771 | CG5919-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..858 | 786..19 | 3840 | 100 | Minus |
CG5919-RA | 1227 | CG5919-RA | 91..858 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271039 | 473..19 | 2275 | 100 | Minus |
3R | 32079331 | 3R | 21270216..21270530 | 786..472 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:48:26 has no hits.
BO04222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:06 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:23 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:37 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..869 | 7..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:40 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..869 | 7..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:40 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270216..21270530 | 472..786 | 100 | -> | Minus |
3R | 21270587..21271050 | 7..471 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:37 Download gff for
BO04222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095938..17096252 | 472..786 | 100 | -> | Minus |
arm_3R | 17096309..17096772 | 7..471 | 98 | | Minus |
BO04222.5prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-01
> BO04222.5prime
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTGCAAGCTTTCTAGACC
BO04222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PA | 771 | CG5919-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..858 | 17..784 | 3840 | 100 | Plus |
CG5919-RA | 1227 | CG5919-RA | 91..858 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271039 | 330..784 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 21270216..21270530 | 17..331 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:11:46 has no hits.
BO04222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:07 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:24 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:09 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..869 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:15 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..869 | 17..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:15 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270216..21270530 | 17..331 | 100 | -> | Plus |
3R | 21270587..21271050 | 332..796 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:09 Download gff for
BO04222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095938..17096252 | 17..331 | 100 | -> | Plus |
arm_3R | 17096309..17096772 | 332..796 | 98 | | Plus |
BO04222.complete Sequence
802 bp (802 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629675
> BO04222.complete
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTGCAAGCTTTCTAGACC
AT
BO04222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 771 | CG5919-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG5919-RA | 771 | CG5919-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..858 | 17..784 | 3840 | 100 | Plus |
CG5919-RA | 1227 | CG5919-RA | 91..858 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271039 | 330..784 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 21270216..21270530 | 17..331 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:51:30 has no hits.
BO04222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:57 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:46 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 80..858 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:33 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 96..858 | 22..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:58 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 80..858 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:08 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 96..858 | 22..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:08 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270221..21270530 | 22..331 | 100 | -> | Plus |
3R | 21270587..21271039 | 332..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:33 Download gff for
BO04222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095943..17096252 | 22..331 | 100 | -> | Plus |
arm_3R | 17096309..17096761 | 332..786 | 99 | | Plus |
BO04222.pep Sequence
Translation from 16 to 802
> BO04222.pep
MLASRLNLLLPRVSWLRGCSTTAVGQKHQRQVPTEFAVHDPLQAHALKEQ
CILVDANDQAIGAASKADCHRVHPETNDVKLHRAFSVFLFNSQGEMLVQK
RSSHKITFPNTYTNACCSHPLYEIEQERQERNAQGIRVAAQRRLNYELGI
PTEELQPQDFRYLTRIHYADTGDGVWGEHEIDYILFLQKDVTLRPNSNEV
SEVRYLRRDKIDEAVAKFSAPLTPWFSLILQHRLKLWWDNLHQLEQFEDL
SNIQRFASFLDH
BO04222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PB | 256 | CG5919-PB | 1..256 | 1..256 | 1359 | 100 | Plus |
CG5919-PA | 256 | CG5919-PA | 1..256 | 1..256 | 1359 | 100 | Plus |