Clone Sequence Records
BO04223.5prime Sequence
437 bp (436 high quality bases) assembled on 2005-12-01
> BO04223.5prime
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTGCAAGCTTTCTAGACC
BO04223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 408 | CG12107-RA | 1..405 | 17..421 | 2000 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..507 | 17..421 | 2010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675087 | 229..421 | 950 | 99.5 | Plus |
2R | 25286936 | 2R | 7674552..7674660 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 7674719..7674824 | 123..228 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:15:15 has no hits.
BO04223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:09 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:28 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:36 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..510 | 10..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:35 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..510 | 10..425 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:35 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674548..7674659 | 10..124 | 96 | -> | Plus |
2R | 7674721..7674824 | 125..228 | 100 | -> | Plus |
2R | 7674895..7675090 | 229..425 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:36 Download gff for
BO04223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562053..3562164 | 10..124 | 96 | -> | Plus |
arm_2R | 3562226..3562329 | 125..228 | 100 | -> | Plus |
arm_2R | 3562400..3562595 | 229..425 | 98 | | Plus |
BO04223.3prime Sequence
437 bp (436 high quality bases) assembled on 2005-12-01
> BO04223.3prime
ATGGTCTAGAAAGCTTGCAGATCCTTTCGCCGCCATTATGGCGTCGTAGT
GCAGGCCCGTGTAGAAGATGATCCACGTGACCAGGAATCCGGCAAACGAC
GTCATGAACCCCTCCTTGATCAGCTCCCATACCCCTCCGTAGGCGTCCTC
GTCCACGTTCTGAAAGTTTATGGCGTACAGGTAGACGATCCCGCAGCTGA
TGCCGGCGAATAGTACGAGGCCCAGAAAGCCCTTCAGCGGAACAATGCCC
CAGATGACGCCCAGAAAGATGCCGAATACCTGGCGTGACCAGTAGATAAC
GTCCAGGAACTCTTCCTTGTCCTCCCACTCCGATTTTGTGATGGCGCGCG
CGCAAATTTCCCGTAGTGTGGAGCTTTTGGCCGAGTGGCCGTTGCGCTCG
ATGGTATTTGTTTTCGTCGCCATGTCGACTGATAACT
BO04223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 408 | CG12107-RA | 1..405 | 423..19 | 2000 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..507 | 423..19 | 2010 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675087 | 211..19 | 950 | 99.5 | Minus |
2R | 25286936 | 2R | 7674552..7674660 | 423..315 | 545 | 100 | Minus |
2R | 25286936 | 2R | 7674719..7674824 | 317..212 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:48:50 has no hits.
BO04223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:08 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:27 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:41 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..510 | 15..430 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:47 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..510 | 15..430 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:47 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674721..7674824 | 212..315 | 100 | -> | Minus |
2R | 7674895..7675090 | 15..211 | 98 | | Minus |
2R | 7674548..7674659 | 316..430 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:41 Download gff for
BO04223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562226..3562329 | 212..315 | 100 | -> | Minus |
arm_2R | 3562400..3562595 | 15..211 | 98 | | Minus |
arm_2R | 3562053..3562164 | 316..430 | 96 | -> | Minus |
BO04223.complete Sequence
439 bp assembled on 2007-06-21
GenBank Submission: FJ629676
> BO04223.complete
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTGCAAGCTTTCTAGACCAT
BO04223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 408 | CG12107-PA | 1..405 | 17..421 | 2010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..507 | 17..421 | 2010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675087 | 229..421 | 950 | 99.5 | Plus |
2R | 25286936 | 2R | 7674552..7674660 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 7674719..7674824 | 123..228 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:59:09 has no hits.
BO04223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:24 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:18 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 96..507 | 10..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:02 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 103..507 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:24 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 96..507 | 10..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:38 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 103..507 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:38 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674895..7675087 | 229..423 | 98 | | Plus |
2R | 7674552..7674659 | 17..124 | 100 | -> | Plus |
2R | 7674721..7674824 | 125..228 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:02 Download gff for
BO04223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562057..3562164 | 17..124 | 100 | -> | Plus |
arm_2R | 3562226..3562329 | 125..228 | 100 | -> | Plus |
arm_2R | 3562400..3562592 | 229..423 | 98 | | Plus |
BO04223.pep Sequence
Translation from 16 to 439
> BO04223.pep
MATKTNTIERNGHSAKSSTLREICARAITKSEWEDKEEFLDVIYWSRQVF
GIFLGVIWGIVPLKGFLGLVLFAGISCGIVYLYAINFQNVDEDAYGGVWE
LIKEGFMTSFAGFLVTWIIFYTGLHYDAIMAAKGSASFLDH
BO04223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 135 | CG12107-PA | 1..135 | 1..135 | 713 | 100 | Plus |