Clone Sequence Records
BO04224.3prime Sequence
422 bp (421 high quality bases) assembled on 2005-12-01
> BO04224.3prime
ATGGTCTAGAAAGCTTGCGGCAGAGTTGTGGATGTTGAGACGGAAGATGT
CGTGGGCCACAAAGAAGGTGCCTGCGTTGGCCTTCAGGAAAAAGACCTGC
GAGAAGGCATGTGGGGGATCGTCATCGCACTGTAGTCTTCCAAGGACGTT
GATCAGAACTCCGCCATCGAAAGTTGGCTGCGAGTCCACTGTGGTTATCA
CTCTGGTAATCTTCTGAAAGCTCAGACTCTGAACTTTTTCCAGAATCTTG
GGTGCCCCCTGTATTTGGTGGCCTTCAAAGGTCATGAATGAGTCGGTAGC
GCTATAGAAATTAACCACGTTCGCCCGATTCGCCGGGTCATCGAATATCG
CATAGTACTGCTGCACAAATCCCTTGCCAATGTCCTCGTACTGCGGATTC
AGCGACATGTCGACTGATAACT
BO04224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1740-PA | 393 | Ntf-2-RA | 1..390 | 408..19 | 1950 | 100 | Minus |
CG10174-PA | 393 | Ntf-2r-RA | 1..334 | 408..75 | 1120 | 93.4 | Minus |
CG10174-PA | 393 | Ntf-2r-RA | 349..390 | 60..19 | 160 | 95.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..535 | 408..19 | 1950 | 100 | Minus |
Ntf-2-RA | 755 | CG1740-RA | 146..535 | 408..19 | 1950 | 100 | Minus |
Ntf-2r-RA | 771 | CG10174-RA | 119..508 | 408..19 | 1515 | 92.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455156 | 408..19 | 1515 | 92.6 | Minus |
X | 23542271 | X | 21038743..21038856 | 132..19 | 570 | 100 | Minus |
X | 23542271 | X | 21035614..21035722 | 408..300 | 545 | 100 | Minus |
X | 23542271 | X | 21036536..21036637 | 231..130 | 510 | 100 | Minus |
X | 23542271 | X | 21036399..21036470 | 300..229 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:00:21 has no hits.
BO04224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:10 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-PA | 1..393 | 18..408 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:30 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1740-PA | 1..393 | 18..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:11 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..535 | 19..415 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:23 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..535 | 19..415 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:23 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455155 | 20..408 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:11 Download gff for
BO04224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455155 | 20..408 | 92 | <- | Minus |
BO04224.5prime Sequence
422 bp (421 high quality bases) assembled on 2005-12-01
> BO04224.5prime
GAAGTTATCAGTCGACATGTCGCTGAATCCGCAGTACGAGGACATTGGCA
AGGGATTTGTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGG
GCGAACGTGGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGA
AGGCCACCAAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTC
TGAGCTTTCAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCA
ACTTTCGATGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGA
TGACGATCCCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACG
CAGGCACCTTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAAC
TCTGCCGCAAGCTTTCTAGACC
BO04224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1740-PA | 393 | Ntf-2-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
CG10174-PA | 393 | Ntf-2r-RA | 1..334 | 17..350 | 1120 | 93.4 | Plus |
CG10174-PA | 393 | Ntf-2r-RA | 349..390 | 365..406 | 160 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..535 | 17..406 | 1950 | 100 | Plus |
Ntf-2-RA | 755 | CG1740-RA | 146..535 | 17..406 | 1950 | 100 | Plus |
Ntf-2r-RA | 771 | CG10174-RA | 119..508 | 17..406 | 1515 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455156 | 17..406 | 1515 | 92.6 | Plus |
X | 23542271 | X | 21038743..21038856 | 293..406 | 570 | 100 | Plus |
X | 23542271 | X | 21035614..21035722 | 17..125 | 545 | 100 | Plus |
X | 23542271 | X | 21036536..21036637 | 194..295 | 510 | 100 | Plus |
X | 23542271 | X | 21036399..21036470 | 125..196 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:32:21 has no hits.
BO04224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:11 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-PA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:31 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1740-PA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:04 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..535 | 10..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:18 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..535 | 10..406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:18 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455155 | 17..405 | 92 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:04 Download gff for
BO04224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455155 | 17..405 | 92 | <- | Plus |
BO04224.complete Sequence
424 bp (424 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629677
> BO04224.complete
GAAGTTATCAGTCGACATGTCGCTGAATCCGCAGTACGAGGACATTGGCA
AGGGATTTGTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGG
GCGAACGTGGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGA
AGGCCACCAAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTC
TGAGCTTTCAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCA
ACTTTCGATGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGA
TGACGATCCCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACG
CAGGCACCTTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAAC
TCTGCCGCAAGCTTTCTAGACCAT
BO04224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 393 | CG1740-PE | 1..390 | 17..406 | 1950 | 100 | Plus |
Ntf-2-RA | 393 | CG1740-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
Ntf-2r-RA | 393 | CG10174-PA | 1..390 | 17..406 | 1515 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..535 | 17..406 | 1950 | 100 | Plus |
Ntf-2-RA | 755 | CG1740-RA | 146..535 | 17..406 | 1950 | 100 | Plus |
Ntf-2r-RA | 771 | CG10174-RA | 119..508 | 17..406 | 1515 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455156 | 17..406 | 1515 | 92.6 | Plus |
X | 23542271 | X | 21038743..21038856 | 293..406 | 570 | 100 | Plus |
X | 23542271 | X | 21035614..21035722 | 17..125 | 545 | 100 | Plus |
X | 23542271 | X | 21036536..21036637 | 194..295 | 510 | 100 | Plus |
X | 23542271 | X | 21036399..21036470 | 125..196 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:01:05 has no hits.
BO04224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:59 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:47 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 135..530 | 10..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:25 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 146..535 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:59 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 135..530 | 10..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:23 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 146..535 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:23 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455156 | 17..408 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:25 Download gff for
BO04224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455156 | 17..408 | 92 | | Plus |
BO04224.pep Sequence
Translation from 16 to 424
> BO04224.pep
MSLNPQYEDIGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQ
GAPKILEKVQSLSFQKITRVITTVDSQPTFDGGVLINVLGRLQCDDDPPH
AFSQVFFLKANAGTFFVAHDIFRLNIHNSAASFLDH
BO04224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-PE | 130 | CG1740-PE | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2-PA | 130 | CG1740-PA | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2r-PA | 130 | CG10174-PA | 1..130 | 1..130 | 594 | 87.7 | Plus |
Ntf-2-PB | 129 | CG1740-PB | 1..128 | 1..128 | 591 | 88.3 | Plus |
Ntf-2-PC | 89 | CG1740-PC | 1..89 | 42..130 | 462 | 100 | Plus |