Clone Sequence Records
BO04226.3prime Sequence
497 bp (496 high quality bases) assembled on 2005-12-01
> BO04226.3prime
ATGGTCTAGAAAGCTTGCCGAGCTCTGGAATCGTATTGTGTGCCTCGAGT
TCAGCAGGAGCGCCAATCCGGCGGCCACAATGAGGGGCAGCATCATCCAC
TGGCCAGCAGGCGAGTTGGCCCCGTTGCACAGATCCTTGGTGCAGGAGCA
GTAGATGGCGGCCACGTCGTGGGTTCCCGAGCGTCTCACGCACTTGTTGT
CGGTGTTTTCGTCTGGGATGTATCCGCATCCACGCACAATCCGGGTCTTC
CCGTAAATCTTTTGCACGGTTTTGCGGCACAGGGTGGGCTTGTATTTGTC
CTTCAGATGCTCCAGAGGCTCCTGTTTGCTGCAGTTCACCTCGCCAATGG
AGTACGGCTCGAAGGGATCGCCGCAGCGGGGATCGAACTCGCTGTTGCAG
TCGTAGCACATCAGGGCAGTGGTCACTTGTATGCAGCAGAGCACGCCTAA
CAACAACAACGTCTTCTCCATGAACGGCGACATGTCGACTGATAACT
BO04226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-PA | 468 | CG6329-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
CG6329-PC | 468 | CG6329-RC | 1..465 | 483..19 | 2325 | 100 | Minus |
CG6329-PB | 468 | CG6329-RB | 1..465 | 483..19 | 2325 | 100 | Minus |
CG6329-PD | 468 | CG6329-RD | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-RF | 1108 | CG6329-RF | 301..765 | 483..19 | 2325 | 100 | Minus |
CG6329-RE | 3335 | CG6329-RE | 384..848 | 483..19 | 2325 | 100 | Minus |
CG6329-RD | 1061 | CG6329-RD | 254..718 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13830778..13831016 | 257..19 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 13830549..13830718 | 427..258 | 850 | 100 | Minus |
2R | 25286936 | 2R | 13829808..13829865 | 483..426 | 290 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2208..2277 | 187..116 | 111 | 65.3 | Minus |
BO04226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:14 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:36 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-PD | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:12 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 246..724 | 11..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:19 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 246..724 | 11..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:19 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13829800..13829865 | 426..491 | 93 | -> | Minus |
2R | 13830551..13830718 | 258..425 | 100 | -> | Minus |
2R | 13830778..13831022 | 11..257 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:12 Download gff for
BO04226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9718056..9718223 | 258..425 | 100 | -> | Minus |
arm_2R | 9718283..9718527 | 11..257 | 98 | | Minus |
arm_2R | 9717305..9717370 | 426..491 | 93 | -> | Minus |
BO04226.5prime Sequence
497 bp (496 high quality bases) assembled on 2005-12-01
> BO04226.5prime
GAAGTTATCAGTCGACATGTCGCCGTTCATGGAGAAGACGTTGTTGTTGT
TAGGCGTGCTCTGCTGCATACAAGTGACCACTGCCCTGATGTGCTACGAC
TGCAACAGCGAGTTCGATCCCCGCTGCGGCGATCCCTTCGAGCCGTACTC
CATTGGCGAGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGG
ACAAATACAAGCCCACCCTGTGCCGCAAAACCGTGCAAAAGATTTACGGG
AAGACCCGGATTGTGCGTGGATGCGGATACATCCCAGACGAAAACACCGA
CAACAAGTGCGTGAGACGCTCGGGAACCCACGACGTGGCCGCCATCTACT
GCTCCTGCACCAAGGATCTGTGCAACGGGGCCAACTCGCCTGCTGGCCAG
TGGATGATGCTGCCCCTCATTGTGGCCGCCGGATTGGCGCTCCTGCTGAA
CTCGAGGCACACAATACGATTCCAGAGCTCGGCAAGCTTTCTAGACC
BO04226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-PA | 468 | CG6329-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
CG6329-PC | 468 | CG6329-RC | 1..465 | 17..481 | 2325 | 100 | Plus |
CG6329-PB | 468 | CG6329-RB | 1..465 | 17..481 | 2325 | 100 | Plus |
CG6329-PD | 468 | CG6329-RD | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-RF | 1108 | CG6329-RF | 301..765 | 17..481 | 2325 | 100 | Plus |
CG6329-RE | 3335 | CG6329-RE | 384..848 | 17..481 | 2325 | 100 | Plus |
CG6329-RD | 1061 | CG6329-RD | 254..718 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13830778..13831016 | 243..481 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 13830549..13830718 | 73..242 | 850 | 100 | Plus |
2R | 25286936 | 2R | 13829808..13829865 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2208..2277 | 313..384 | 111 | 65.3 | Plus |
BO04226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:15 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:37 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-PD | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:43 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 246..724 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:56 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 246..724 | 9..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:56 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13829800..13829865 | 9..74 | 93 | -> | Plus |
2R | 13830551..13830718 | 75..242 | 100 | -> | Plus |
2R | 13830778..13831022 | 243..489 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:43 Download gff for
BO04226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9717305..9717370 | 9..74 | 93 | -> | Plus |
arm_2R | 9718056..9718223 | 75..242 | 100 | -> | Plus |
arm_2R | 9718283..9718527 | 243..489 | 98 | | Plus |
BO04226.complete Sequence
499 bp assembled on 2007-06-21
GenBank Submission: FJ629678
> BO04226.complete
GAAGTTATCAGTCGACATGTCGCCGTTCATGGAGAAGACGTTGTTGTTGT
TAGGCGTGCTCTGCTGCATACAAGTGACCACTGCCCTGATGTGCTACGAC
TGCAACAGCGAGTTCGATCCCCGCTGCGGCGATCCCTTCGAGCCGTACTC
CATTGGCGAGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGG
ACAAATACAAGCCCACCCTGTGCCGCAAAACCGTGCAAAAGATTTACGGG
AAGACCCGGATTGTGCGTGGATGCGGATACATCCCAGACGAAAACACCGA
CAACAAGTGCGTGAGACGCTCGGGAACCCACGACGTGGCCGCCATCTACT
GCTCCTGCACCAAGGATCTGTGCAACGGGGCCAACTCGCCTGCTGGCCAG
TGGATGATGCTGCCCCTCATTGTGGCCGCCGGATTGGCGCTCCTGCTGAA
CTCGAGGCACACAATACGATTCCAGAGCTCGGCAAGCTTTCTAGACCAT
BO04226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-RF | 468 | CG6329-PF | 1..465 | 17..481 | 2325 | 100 | Plus |
CG6329-RE | 468 | CG6329-PE | 1..465 | 17..481 | 2325 | 100 | Plus |
CG6329-RD | 468 | CG6329-PD | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-RF | 1108 | CG6329-RF | 301..765 | 17..481 | 2325 | 100 | Plus |
CG6329-RE | 3335 | CG6329-RE | 384..848 | 17..481 | 2325 | 100 | Plus |
CG6329-RD | 1061 | CG6329-RD | 254..718 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13830778..13831016 | 243..481 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 13830549..13830718 | 73..242 | 850 | 100 | Plus |
2R | 25286936 | 2R | 13829808..13829865 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2208..2277 | 313..384 | 111 | 65.3 | Plus |
BO04226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:36 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:38 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RB | 497..975 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:14 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 254..718 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:36 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RB | 497..975 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:06 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6329-RD | 254..718 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:06 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13829808..13829865 | 17..74 | 100 | -> | Plus |
2R | 13830551..13830718 | 75..242 | 100 | -> | Plus |
2R | 13830778..13831016 | 243..483 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:14 Download gff for
BO04226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9717313..9717370 | 17..74 | 100 | -> | Plus |
arm_2R | 9718056..9718223 | 75..242 | 100 | -> | Plus |
arm_2R | 9718283..9718521 | 243..483 | 99 | | Plus |
BO04226.pep Sequence
Translation from 16 to 499
> BO04226.pep
MSPFMEKTLLLLGVLCCIQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVN
CSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGCGYIPDENTDNKCVR
RSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNSRHTI
RFQSSASFLDH
BO04226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6329-PF | 155 | CG6329-PF | 1..155 | 1..155 | 847 | 100 | Plus |
CG6329-PE | 155 | CG6329-PE | 1..155 | 1..155 | 847 | 100 | Plus |
CG6329-PD | 155 | CG6329-PD | 1..155 | 1..155 | 847 | 100 | Plus |
CG6329-PB | 155 | CG6329-PB | 1..155 | 1..155 | 847 | 100 | Plus |
CG6329-PC | 155 | CG6329-PC | 1..155 | 1..155 | 847 | 100 | Plus |