Clone BO04226 Report

Search the DGRC for BO04226

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG6329-RA
Protein status:BO04226.pep:
Sequenced Size:499

Clone Sequence Records

BO04226.3prime Sequence

497 bp (496 high quality bases) assembled on 2005-12-01

> BO04226.3prime
ATGGTCTAGAAAGCTTGCCGAGCTCTGGAATCGTATTGTGTGCCTCGAGT
TCAGCAGGAGCGCCAATCCGGCGGCCACAATGAGGGGCAGCATCATCCAC
TGGCCAGCAGGCGAGTTGGCCCCGTTGCACAGATCCTTGGTGCAGGAGCA
GTAGATGGCGGCCACGTCGTGGGTTCCCGAGCGTCTCACGCACTTGTTGT
CGGTGTTTTCGTCTGGGATGTATCCGCATCCACGCACAATCCGGGTCTTC
CCGTAAATCTTTTGCACGGTTTTGCGGCACAGGGTGGGCTTGTATTTGTC
CTTCAGATGCTCCAGAGGCTCCTGTTTGCTGCAGTTCACCTCGCCAATGG
AGTACGGCTCGAAGGGATCGCCGCAGCGGGGATCGAACTCGCTGTTGCAG
TCGTAGCACATCAGGGCAGTGGTCACTTGTATGCAGCAGAGCACGCCTAA
CAACAACAACGTCTTCTCCATGAACGGCGACATGTCGACTGATAACT

BO04226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-PA 468 CG6329-RA 1..465 483..19 2325 100 Minus
CG6329-PC 468 CG6329-RC 1..465 483..19 2325 100 Minus
CG6329-PB 468 CG6329-RB 1..465 483..19 2325 100 Minus
CG6329-PD 468 CG6329-RD 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-RF 1108 CG6329-RF 301..765 483..19 2325 100 Minus
CG6329-RE 3335 CG6329-RE 384..848 483..19 2325 100 Minus
CG6329-RD 1061 CG6329-RD 254..718 483..19 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13830778..13831016 257..19 1195 100 Minus
2R 25286936 2R 13830549..13830718 427..258 850 100 Minus
2R 25286936 2R 13829808..13829865 483..426 290 100 Minus
Blast to na_te.dros performed 2015-02-13 15:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2208..2277 187..116 111 65.3 Minus

BO04226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:14 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-PA 1..468 15..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:36 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-PD 1..468 15..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:12 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 246..724 11..491 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:19 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 246..724 11..491 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:19 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13829800..13829865 426..491 93 -> Minus
2R 13830551..13830718 258..425 100 -> Minus
2R 13830778..13831022 11..257 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:12 Download gff for BO04226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9718056..9718223 258..425 100 -> Minus
arm_2R 9718283..9718527 11..257 98   Minus
arm_2R 9717305..9717370 426..491 93 -> Minus

BO04226.5prime Sequence

497 bp (496 high quality bases) assembled on 2005-12-01

> BO04226.5prime
GAAGTTATCAGTCGACATGTCGCCGTTCATGGAGAAGACGTTGTTGTTGT
TAGGCGTGCTCTGCTGCATACAAGTGACCACTGCCCTGATGTGCTACGAC
TGCAACAGCGAGTTCGATCCCCGCTGCGGCGATCCCTTCGAGCCGTACTC
CATTGGCGAGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGG
ACAAATACAAGCCCACCCTGTGCCGCAAAACCGTGCAAAAGATTTACGGG
AAGACCCGGATTGTGCGTGGATGCGGATACATCCCAGACGAAAACACCGA
CAACAAGTGCGTGAGACGCTCGGGAACCCACGACGTGGCCGCCATCTACT
GCTCCTGCACCAAGGATCTGTGCAACGGGGCCAACTCGCCTGCTGGCCAG
TGGATGATGCTGCCCCTCATTGTGGCCGCCGGATTGGCGCTCCTGCTGAA
CTCGAGGCACACAATACGATTCCAGAGCTCGGCAAGCTTTCTAGACC

BO04226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-PA 468 CG6329-RA 1..465 17..481 2325 100 Plus
CG6329-PC 468 CG6329-RC 1..465 17..481 2325 100 Plus
CG6329-PB 468 CG6329-RB 1..465 17..481 2325 100 Plus
CG6329-PD 468 CG6329-RD 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-RF 1108 CG6329-RF 301..765 17..481 2325 100 Plus
CG6329-RE 3335 CG6329-RE 384..848 17..481 2325 100 Plus
CG6329-RD 1061 CG6329-RD 254..718 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13830778..13831016 243..481 1195 100 Plus
2R 25286936 2R 13830549..13830718 73..242 850 100 Plus
2R 25286936 2R 13829808..13829865 17..74 290 100 Plus
Blast to na_te.dros performed 2015-02-12 23:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2208..2277 313..384 111 65.3 Plus

BO04226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:15 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:37 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-PD 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:43 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 246..724 9..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:56 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 246..724 9..489 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:56 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13829800..13829865 9..74 93 -> Plus
2R 13830551..13830718 75..242 100 -> Plus
2R 13830778..13831022 243..489 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:43 Download gff for BO04226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9717305..9717370 9..74 93 -> Plus
arm_2R 9718056..9718223 75..242 100 -> Plus
arm_2R 9718283..9718527 243..489 98   Plus

BO04226.complete Sequence

499 bp assembled on 2007-06-21

GenBank Submission: FJ629678

> BO04226.complete
GAAGTTATCAGTCGACATGTCGCCGTTCATGGAGAAGACGTTGTTGTTGT
TAGGCGTGCTCTGCTGCATACAAGTGACCACTGCCCTGATGTGCTACGAC
TGCAACAGCGAGTTCGATCCCCGCTGCGGCGATCCCTTCGAGCCGTACTC
CATTGGCGAGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGG
ACAAATACAAGCCCACCCTGTGCCGCAAAACCGTGCAAAAGATTTACGGG
AAGACCCGGATTGTGCGTGGATGCGGATACATCCCAGACGAAAACACCGA
CAACAAGTGCGTGAGACGCTCGGGAACCCACGACGTGGCCGCCATCTACT
GCTCCTGCACCAAGGATCTGTGCAACGGGGCCAACTCGCCTGCTGGCCAG
TGGATGATGCTGCCCCTCATTGTGGCCGCCGGATTGGCGCTCCTGCTGAA
CTCGAGGCACACAATACGATTCCAGAGCTCGGCAAGCTTTCTAGACCAT

BO04226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-RF 468 CG6329-PF 1..465 17..481 2325 100 Plus
CG6329-RE 468 CG6329-PE 1..465 17..481 2325 100 Plus
CG6329-RD 468 CG6329-PD 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-RF 1108 CG6329-RF 301..765 17..481 2325 100 Plus
CG6329-RE 3335 CG6329-RE 384..848 17..481 2325 100 Plus
CG6329-RD 1061 CG6329-RD 254..718 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13830778..13831016 243..481 1195 100 Plus
2R 25286936 2R 13830549..13830718 73..242 850 100 Plus
2R 25286936 2R 13829808..13829865 17..74 290 100 Plus
Blast to na_te.dros performed 2014-11-28 00:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2208..2277 313..384 111 65.3 Plus

BO04226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:36 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
CG6329-RB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:38 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
CG6329-RB 497..975 9..489 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:14 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 254..718 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:36 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
CG6329-RB 497..975 9..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:06 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
CG6329-RD 254..718 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:06 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13829808..13829865 17..74 100 -> Plus
2R 13830551..13830718 75..242 100 -> Plus
2R 13830778..13831016 243..483 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:14 Download gff for BO04226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9717313..9717370 17..74 100 -> Plus
arm_2R 9718056..9718223 75..242 100 -> Plus
arm_2R 9718283..9718521 243..483 99   Plus

BO04226.pep Sequence

Translation from 16 to 499

> BO04226.pep
MSPFMEKTLLLLGVLCCIQVTTALMCYDCNSEFDPRCGDPFEPYSIGEVN
CSKQEPLEHLKDKYKPTLCRKTVQKIYGKTRIVRGCGYIPDENTDNKCVR
RSGTHDVAAIYCSCTKDLCNGANSPAGQWMMLPLIVAAGLALLLNSRHTI
RFQSSASFLDH

BO04226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6329-PF 155 CG6329-PF 1..155 1..155 847 100 Plus
CG6329-PE 155 CG6329-PE 1..155 1..155 847 100 Plus
CG6329-PD 155 CG6329-PD 1..155 1..155 847 100 Plus
CG6329-PB 155 CG6329-PB 1..155 1..155 847 100 Plus
CG6329-PC 155 CG6329-PC 1..155 1..155 847 100 Plus