Clone Sequence Records
BO04227.3prime Sequence
395 bp (394 high quality bases) assembled on 2005-12-01
> BO04227.3prime
ATGGTCTAGAAAGCTTGCACTTTGTCGATCTTCAATTTTGACTTCTACAA
TTAGGCCGCCAACATTTTTGCCACCACTGAAGAATGTTATAATGGCCTTG
ACAATCCCTCGAGGCACCTGCGATGGCCAATCTTGCGTATTCAAAATGAC
GTTCTTAACGTAGAATTCGCCTTCGGGCACTGGGCAAAAGTCATCGTCGA
CAACGGGGAAATTTGTGGTTTCTCCAGTCTTCAGAGAGGGTTGCACAAAC
TGGACATAGAACTTTTTGAAGCACTCGCAAATGCTAGTTTGCGGCACATC
CATGACCATCCTCTTGAATTCCCCATCGCCATTGGGGCTTGAATAGAGCT
CCACGGATACCTTGAAGTCATCATTGTTCATGTCGACTGATAACT
BO04227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7313-PA | 555 | CheA75a-RA | 190..552 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA75a-RA | 699 | CG7313-RA | 190..552 | 381..19 | 1815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18252337..18252699 | 381..19 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:49:45 has no hits.
BO04227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:16 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7313-PA | 182..555 | 18..390 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:38 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7313-PA | 182..555 | 18..390 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:48 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 19..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:01 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 19..390 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:01 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18252329..18252699 | 19..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:48 Download gff for
BO04227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18245429..18245799 | 19..390 | 99 | | Minus |
BO04227.5prime Sequence
395 bp (394 high quality bases) assembled on 2005-12-01
> BO04227.5prime
GAAGTTATCAGTCGACATGAACAATGATGACTTCAAGGTATCCGTGGAGC
TCTATTCAAGCCCCAATGGCGATGGGGAATTCAAGAGGATGGTCATGGAT
GTGCCGCAAACTAGCATTTGCGAGTGCTTCAAAAAGTTCTATGTCCAGTT
TGTGCAACCCTCTCTGAAGACTGGAGAAACCACAAATTTCCCCGTTGTCG
ACGATGACTTTTGCCCAGTGCCCGAAGGCGAATTCTACGTTAAGAACGTC
ATTTTGAATACGCAAGATTGGCCATCGCAGGTGCCTCGAGGGATTGTCAA
GGCCATTATAACATTCTTCAGTGGTGGCAAAAATGTTGGCGGCCTAATTG
TAGAAGTCAAAATTGAAGATCGACAAAGTGCAAGCTTTCTAGACC
BO04227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7313-PA | 555 | CheA75a-RA | 190..552 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA75a-RA | 699 | CG7313-RA | 190..552 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18252337..18252699 | 17..379 | 1815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:50:14 has no hits.
BO04227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:16 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7313-PA | 182..555 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:39 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7313-PA | 182..555 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:51 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 8..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:08 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 8..379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:08 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18252329..18252699 | 8..379 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:51 Download gff for
BO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18245429..18245799 | 8..379 | 99 | | Plus |
BO04227.complete Sequence
397 bp (397 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629679
> BO04227.complete
GAAGTTATCAGTCGACATGAACAATGATGACTTCAAGGTATCCGTGGAGC
TCTATTCAAGCCCCAATGGCGATGGGGAATTCAAGAGGATGGTCATGGAT
GTGCCGCAAACTAGCATTTGCGAGTGCTTCAAAAAGTTCTATGTCCAGTT
TGTGCAACCCTCTCTGAAGACTGGAGAAACCACAAATTTCCCCGTTGTCG
ACGATGACTTTTGCCCAGTGCCCGAAGGCGAATTCTACGTTAAGAACGTC
ATTTTGAATACGCAAGATTGGCCATCGCAGGTGCCTCGAGGGATTGTCAA
GGCCATTATAACATTCTTCAGTGGTGGCAAAAATGTTGGCGGCCTAATTG
TAGAAGTCAAAATTGAAGATCGACAAAGTGCAAGCTTTCTAGACCAT
BO04227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA75a-RA | 555 | CG7313-PA | 190..552 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA75a-RA | 699 | CG7313-RA | 190..552 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18252337..18252699 | 17..379 | 1815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:47 has no hits.
BO04227.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:00 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..555 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:49 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 8..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:10 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 190..552 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:00 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 182..552 | 8..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:44 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA75a-RA | 190..552 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:44 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18252337..18252699 | 17..381 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:10 Download gff for
BO04227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18245437..18245799 | 17..381 | 99 | | Plus |
BO04227.pep Sequence
Translation from 16 to 397
> BO04227.pep
MNNDDFKVSVELYSSPNGDGEFKRMVMDVPQTSICECFKKFYVQFVQPSL
KTGETTNFPVVDDDFCPVPEGEFYVKNVILNTQDWPSQVPRGIVKAIITF
FSGGKNVGGLIVEVKIEDRQSASFLDH
BO04227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA75a-PA | 184 | CG7313-PA | 64..184 | 1..121 | 644 | 100 | Plus |
| CheA84a-PA | 180 | CG33779-PA | 63..178 | 1..118 | 212 | 34.7 | Plus |
| CheA86a-PA | 189 | CG33698-PA | 64..180 | 1..119 | 205 | 33.6 | Plus |
| CheA56a-PA | 180 | CG33724-PA | 67..177 | 3..118 | 152 | 26.7 | Plus |
