Clone Sequence Records
BO04229.5prime Sequence
338 bp (337 high quality bases) assembled on 2005-12-01
> BO04229.5prime
GAAGTTATCAGTCGACATGGCCAACTTCAGTCAGCTAAGAATCACCATTG
GATTTTGTGTGATTTTGGCCGTTATCCTGGAACAACCATTCACTGCAGAG
GCGGTTGTTCGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCT
ATGTAGCCCATCTACCCTGGGCATATTTTTCGATCCGGAGACACAACGTT
GTCGCTACATGGGATGCAGTAATCGAAAGCTGTTCTTAACCCTTGAAGAC
TGCGAAAAGATTTGCAACAATCCGCGGCACATCAAGCGACGCAACCAAGC
AAAGGCCAATGAAACATCACATGCAAGCTTTCTAGACC
BO04229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PA | 309 | CG31778-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..821 | 17..322 | 1530 | 100 | Plus |
| CG31778-RA | 1137 | CG31778-RA | 516..821 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704422..3704633 | 322..111 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 3704879..3704973 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:03 has no hits.
BO04229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:18 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:42 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:37 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 12..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:23 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 12..326 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:23 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704423..3704633 | 111..321 | 100 | <- | Minus |
| 2L | 3704880..3704978 | 12..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:37 Download gff for
BO04229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704423..3704633 | 111..321 | 100 | <- | Minus |
| arm_2L | 3704880..3704978 | 12..110 | 97 | | Minus |
BO04229.3prime Sequence
338 bp (337 high quality bases) assembled on 2005-12-01
> BO04229.3prime
ATGGTCTAGAAAGCTTGCATGTGATGTTTCATTGGCCTTTGCTTGGTTGC
GTCGCTTGATGTGCCGCGGATTGTTGCAAATCTTTTCGCAGTCTTCAAGG
GTTAAGAACAGCTTTCGATTACTGCATCCCATGTAGCGACAACGTTGTGT
CTCCGGATCGAAAAATATGCCCAGGGTAGATGGGCTACATAGCCACACAC
TCTTATTCGGCGCCGTCTGGCATGCATCTCGAACAACCGCCTCTGCAGTG
AATGGTTGTTCCAGGATAACGGCCAAAATCACACAAAATCCAATGGTGAT
TCTTAGCTGACTGAAGTTGGCCATGTCGACTGATAACT
BO04229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PA | 309 | CG31778-RA | 1..306 | 324..19 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..821 | 324..19 | 1530 | 100 | Minus |
| CG31778-RA | 1137 | CG31778-RA | 516..821 | 324..19 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704422..3704633 | 19..230 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 3704879..3704973 | 230..324 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:12:11 has no hits.
BO04229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:17 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 16..324 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:40 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 16..324 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:14 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 15..329 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:22 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 15..329 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:22 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704423..3704633 | 20..230 | 100 | <- | Plus |
| 2L | 3704880..3704978 | 231..329 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:14 Download gff for
BO04229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704423..3704633 | 20..230 | 100 | <- | Plus |
| arm_2L | 3704880..3704978 | 231..329 | 97 | | Plus |
BO04229.complete Sequence
340 bp (340 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629680
> BO04229.complete
GAAGTTATCAGTCGACATGGCCAACTTCAGTCAGCTAAGAATCACCATTG
GATTTTGTGTGATTTTGGCCGTTATCCTGGAACAACCATTCACTGCAGAG
GCGGTTGTTCGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCT
ATGTAGCCCATCTACCCTGGGCATATTTTTCGATCCGGAGACACAACGTT
GTCGCTACATGGGATGCAGTAATCGAAAGCTGTTCTTAACCCTTGAAGAC
TGCGAAAAGATTTGCAACAATCCGCGGCACATCAAGCGACGCAACCAAGC
AAAGGCCAATGAAACATCACATGCAAGCTTTCTAGACCAT
BO04229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 309 | CG31778-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
| CG31778-RA | 309 | CG31778-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..821 | 17..322 | 1530 | 100 | Plus |
| CG31778-RA | 1137 | CG31778-RA | 516..821 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704422..3704633 | 322..111 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 3704879..3704973 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:04:44 has no hits.
BO04229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:06 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:34 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 485..799 | 12..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:33 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 516..821 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:06 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 485..799 | 12..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:19 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 516..821 | 17..324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:19 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704419..3704633 | 111..324 | 99 | <- | Minus |
| 2L | 3704880..3704973 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:33 Download gff for
BO04229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704880..3704973 | 17..110 | 100 | | Minus |
| arm_2L | 3704419..3704633 | 111..324 | 99 | <- | Minus |
BO04229.pep Sequence
Translation from 16 to 340
> BO04229.pep
MANFSQLRITIGFCVILAVILEQPFTAEAVVRDACQTAPNKSVWLCSPST
LGIFFDPETQRCRYMGCSNRKLFLTLEDCEKICNNPRHIKRRNQAKANET
SHASFLDH
BO04229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PB | 102 | CG31778-PB | 1..102 | 1..102 | 547 | 100 | Plus |
| CG31778-PA | 102 | CG31778-PA | 1..102 | 1..102 | 547 | 100 | Plus |
