Clone Sequence Records
BO04231.3prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-01
> BO04231.3prime
ATGGTCTAGAAAGCTTGCGCACTTCGTTGAGCTCAGAAACTTAATGTAAT
TAAATAGTCTTTCGTGCTCCTCGATACGCAAAGCGTAAACTCGATTAGAT
ATACCCCAGACATCACTGCGTCCGACCATGTCAGTCTCGAAAACGTTGCC
CAGCTTGTTCCACTGTACATCTGTGAACTTCTTTTGAACCCGACGGTACA
GTGCTCGTGCACAGACTGTTTCCACGGATATATTATTGGTGTATATGAAT
TCCTTGCGATTCTCGTACAACTTCCTGGTGTGCGCGTAGTCGCTTCCCAG
CTCCTTTTCAGTCGTGATGAACATGTGATAGACGCGCTTTCGACTCTCCG
GCTTCTCGAGGCACAGGAAGCAAAGGTACTGTGTGCCGTCGGCTGGATTA
AACTTCGGTGGAGCTGCAGGCGGAGCATTGGTCTTCAGTAGAATCCTGCT
TAATATCGCTGGAAATGTGTGCGGATTCACTTTGGGTGCTTCCAAGACAG
CCGGCGGCTTCTTTTTGCCCCTAATACGGGGTGTATTCCATTCTGACTTG
ACCCTTCCGGATATATTGAGCACAGGTGCCGCTGATGAATCACTTTTGTT
TGCAGATACAGGTGCAGTACGTTCTTGAGCTTCAGATTCCATGTCGACTG
ATAACT
BO04231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15675-PB | 627 | CG15675-RB | 1..624 | 642..19 | 3120 | 100 | Minus |
CG15675-PA | 1344 | CG15675-RA | 731..1341 | 629..19 | 3055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42365-RA | 908 | CG42365-RA | 185..809 | 643..19 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21666871..21667495 | 643..19 | 3125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:15:43 has no hits.
BO04231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:21 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-PB | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:46 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-PB | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:40 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 185..819 | 7..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:33 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 185..819 | 7..643 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:33 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21666871..21667505 | 7..643 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:40 Download gff for
BO04231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17554376..17555010 | 7..643 | 99 | | Minus |
BO04231.5prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-01
> BO04231.5prime
GAAGTTATCAGTCGACATGGAATCTGAAGCTCAAGAACGTACTGCACCTG
TATCTGCAAACAAAAGTGATTCATCAGCGGCACCTGTGCTCAATATATCC
GGAAGGGTCAAGTCAGAATGGAATACACCCCGTATTAGGGGCAAAAAGAA
GCCGCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACACATTTCCAG
CGATATTAAGCAGGATTCTACTGAAGACCAATGCTCCGCCTGCAGCTCCA
CCGAAGTTTAATCCAGCCGACGGCACACAGTACCTTTGCTTCCTGTGCCT
CGAGAAGCCGGAGAGTCGAAAGCGCGTCTATCACATGTTCATCACGACTG
AAAAGGAGCTGGGAAGCGACTACGCGCACACCAGGAAGTTGTACGAGAAT
CGCAAGGAATTCATATACACCAATAATATATCCGTGGAAACAGTCTGTGC
ACGAGCACTGTACCGTCGGGTTCAAAAGAAGTTCACAGATGTACAGTGGA
ACAAGCTGGGCAACGTTTTCGAGACTGACATGGTCGGACGCAGTGATGTC
TGGGGTATATCTAATCGAGTTTACGCTTTGCGTATCGAGGAGCACGAAAG
ACTATTTAATTACATTAAGTTTCTGAGCTCAACGAAGTGCGCAAGCTTTC
TAGACC
BO04231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15675-PB | 627 | CG15675-RB | 1..624 | 17..640 | 3120 | 100 | Plus |
CG15675-PA | 1344 | CG15675-RA | 731..1341 | 30..640 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42365-RA | 908 | CG42365-RA | 185..809 | 16..640 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21666871..21667495 | 16..640 | 3125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:12:24 has no hits.
BO04231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:22 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-PB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:47 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-PB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:28 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 185..819 | 16..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:47 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 185..819 | 16..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:47 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21666871..21667505 | 16..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:28 Download gff for
BO04231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17554376..17555010 | 16..652 | 99 | | Plus |
BO04231.complete Sequence
658 bp (658 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629681
> BO04231.complete
GAAGTTATCAGTCGACATGGAATCTGAAGCTCAAGAACGTACTGCACCTG
TATCTGCAAACAAAAGTGATTCATCAGCGGCACCTGTGCTCAATATATCC
GGAAGGGTCAAGTCAGAATGGAATACACCCCGTATTAGGGGCAAAAAGAA
GCCGCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACACATTTCCAG
CGATATTAAGCAGGATTCTACTGAAGACCAATGCTCCGCCTGCAGCTCCA
CCGAAGTTTAATCCAGCCGACGGCACACAGTACCTTTGCTTCCTGTGCCT
CGAGAAGCCGGAGAGTCGAAAGCGCGTCTATCACATGTTCATCACGACTG
AAAAGGAGCTGGGAAGCGACTACGCGCACACCAGGAAGTTGTACGAGAAT
CGCAAGGAATTCATATACACCAATAATATATCCGTGGAAACAGTCTGTGC
ACGAGCACTGTACCGTCGGGTTCAAAAGAAGTTCACAGATGTACAGTGGA
ACAAGCTGGGCAACGTTTTCGAGACTGACATGGTCGGACGCAGTGATGTC
TGGGGTATATCTAATCGAGTTTACGCTTTGCGTATCGAGGAGCACGAAAG
ACTATTTAATTACATTAAGTTTCTGAGCTCAACGAAGTGCGCAAGCTTTC
TAGACCAT
BO04231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42365-RA | 627 | CG42365-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42365-RA | 908 | CG42365-RA | 185..809 | 16..640 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21666871..21667495 | 16..640 | 3125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:37 has no hits.
BO04231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:01 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-RB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:51 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 125..759 | 16..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:10 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 186..809 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:01 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15675-RB | 125..759 | 16..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:56 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42365-RA | 186..809 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:56 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21666872..21667495 | 17..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:10 Download gff for
BO04231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17554377..17555000 | 17..642 | 99 | | Plus |
BO04231.pep Sequence
Translation from 16 to 658
> BO04231.pep
MESEAQERTAPVSANKSDSSAAPVLNISGRVKSEWNTPRIRGKKKPPAVL
EAPKVNPHTFPAILSRILLKTNAPPAAPPKFNPADGTQYLCFLCLEKPES
RKRVYHMFITTEKELGSDYAHTRKLYENRKEFIYTNNISVETVCARALYR
RVQKKFTDVQWNKLGNVFETDMVGRSDVWGISNRVYALRIEEHERLFNYI
KFLSSTKCASFLDH
BO04231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42365-PA | 208 | CG15675-PB | 1..208 | 1..208 | 1095 | 100 | Plus |
CG42364-PB | 202 | CG42364-PB | 1..200 | 1..206 | 448 | 45.1 | Plus |