Clone BO04231 Report

Search the DGRC for BO04231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG42365-RA
Protein status:BO04231.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO04231.3prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-01

> BO04231.3prime
ATGGTCTAGAAAGCTTGCGCACTTCGTTGAGCTCAGAAACTTAATGTAAT
TAAATAGTCTTTCGTGCTCCTCGATACGCAAAGCGTAAACTCGATTAGAT
ATACCCCAGACATCACTGCGTCCGACCATGTCAGTCTCGAAAACGTTGCC
CAGCTTGTTCCACTGTACATCTGTGAACTTCTTTTGAACCCGACGGTACA
GTGCTCGTGCACAGACTGTTTCCACGGATATATTATTGGTGTATATGAAT
TCCTTGCGATTCTCGTACAACTTCCTGGTGTGCGCGTAGTCGCTTCCCAG
CTCCTTTTCAGTCGTGATGAACATGTGATAGACGCGCTTTCGACTCTCCG
GCTTCTCGAGGCACAGGAAGCAAAGGTACTGTGTGCCGTCGGCTGGATTA
AACTTCGGTGGAGCTGCAGGCGGAGCATTGGTCTTCAGTAGAATCCTGCT
TAATATCGCTGGAAATGTGTGCGGATTCACTTTGGGTGCTTCCAAGACAG
CCGGCGGCTTCTTTTTGCCCCTAATACGGGGTGTATTCCATTCTGACTTG
ACCCTTCCGGATATATTGAGCACAGGTGCCGCTGATGAATCACTTTTGTT
TGCAGATACAGGTGCAGTACGTTCTTGAGCTTCAGATTCCATGTCGACTG
ATAACT

BO04231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15675-PB 627 CG15675-RB 1..624 642..19 3120 100 Minus
CG15675-PA 1344 CG15675-RA 731..1341 629..19 3055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-RA 908 CG42365-RA 185..809 643..19 3125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21666871..21667495 643..19 3125 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:15:43 has no hits.

BO04231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:21 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15675-PB 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:46 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15675-PB 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:40 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 185..819 7..643 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:33 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 185..819 7..643 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:33 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21666871..21667505 7..643 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:40 Download gff for BO04231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17554376..17555010 7..643 99   Minus

BO04231.5prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-01

> BO04231.5prime
GAAGTTATCAGTCGACATGGAATCTGAAGCTCAAGAACGTACTGCACCTG
TATCTGCAAACAAAAGTGATTCATCAGCGGCACCTGTGCTCAATATATCC
GGAAGGGTCAAGTCAGAATGGAATACACCCCGTATTAGGGGCAAAAAGAA
GCCGCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACACATTTCCAG
CGATATTAAGCAGGATTCTACTGAAGACCAATGCTCCGCCTGCAGCTCCA
CCGAAGTTTAATCCAGCCGACGGCACACAGTACCTTTGCTTCCTGTGCCT
CGAGAAGCCGGAGAGTCGAAAGCGCGTCTATCACATGTTCATCACGACTG
AAAAGGAGCTGGGAAGCGACTACGCGCACACCAGGAAGTTGTACGAGAAT
CGCAAGGAATTCATATACACCAATAATATATCCGTGGAAACAGTCTGTGC
ACGAGCACTGTACCGTCGGGTTCAAAAGAAGTTCACAGATGTACAGTGGA
ACAAGCTGGGCAACGTTTTCGAGACTGACATGGTCGGACGCAGTGATGTC
TGGGGTATATCTAATCGAGTTTACGCTTTGCGTATCGAGGAGCACGAAAG
ACTATTTAATTACATTAAGTTTCTGAGCTCAACGAAGTGCGCAAGCTTTC
TAGACC

BO04231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15675-PB 627 CG15675-RB 1..624 17..640 3120 100 Plus
CG15675-PA 1344 CG15675-RA 731..1341 30..640 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-RA 908 CG42365-RA 185..809 16..640 3125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21666871..21667495 16..640 3125 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:12:24 has no hits.

BO04231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:22 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15675-PB 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:47 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15675-PB 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:28 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 185..819 16..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:47 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 185..819 16..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:47 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21666871..21667505 16..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:28 Download gff for BO04231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17554376..17555010 16..652 99   Plus

BO04231.complete Sequence

658 bp (658 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629681

> BO04231.complete
GAAGTTATCAGTCGACATGGAATCTGAAGCTCAAGAACGTACTGCACCTG
TATCTGCAAACAAAAGTGATTCATCAGCGGCACCTGTGCTCAATATATCC
GGAAGGGTCAAGTCAGAATGGAATACACCCCGTATTAGGGGCAAAAAGAA
GCCGCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACACATTTCCAG
CGATATTAAGCAGGATTCTACTGAAGACCAATGCTCCGCCTGCAGCTCCA
CCGAAGTTTAATCCAGCCGACGGCACACAGTACCTTTGCTTCCTGTGCCT
CGAGAAGCCGGAGAGTCGAAAGCGCGTCTATCACATGTTCATCACGACTG
AAAAGGAGCTGGGAAGCGACTACGCGCACACCAGGAAGTTGTACGAGAAT
CGCAAGGAATTCATATACACCAATAATATATCCGTGGAAACAGTCTGTGC
ACGAGCACTGTACCGTCGGGTTCAAAAGAAGTTCACAGATGTACAGTGGA
ACAAGCTGGGCAACGTTTTCGAGACTGACATGGTCGGACGCAGTGATGTC
TGGGGTATATCTAATCGAGTTTACGCTTTGCGTATCGAGGAGCACGAAAG
ACTATTTAATTACATTAAGTTTCTGAGCTCAACGAAGTGCGCAAGCTTTC
TAGACCAT

BO04231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-RA 627 CG42365-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-RA 908 CG42365-RA 185..809 16..640 3125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21666871..21667495 16..640 3125 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:40:37 has no hits.

BO04231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:01 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
CG15675-RB 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:51 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 125..759 16..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:10 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 186..809 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:01 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
CG15675-RB 125..759 16..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:56 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 186..809 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:56 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21666872..21667495 17..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:10 Download gff for BO04231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17554377..17555000 17..642 99   Plus

BO04231.pep Sequence

Translation from 16 to 658

> BO04231.pep
MESEAQERTAPVSANKSDSSAAPVLNISGRVKSEWNTPRIRGKKKPPAVL
EAPKVNPHTFPAILSRILLKTNAPPAAPPKFNPADGTQYLCFLCLEKPES
RKRVYHMFITTEKELGSDYAHTRKLYENRKEFIYTNNISVETVCARALYR
RVQKKFTDVQWNKLGNVFETDMVGRSDVWGISNRVYALRIEEHERLFNYI
KFLSSTKCASFLDH

BO04231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-PA 208 CG15675-PB 1..208 1..208 1095 100 Plus
CG42364-PB 202 CG42364-PB 1..200 1..206 448 45.1 Plus