Clone Sequence Records
BO04235.3prime Sequence
590 bp (589 high quality bases) assembled on 2005-12-01
> BO04235.3prime
ATGGTCTAGAAAGCTTGCTTCAGAACGCAACATCTTCTCCTTTTGGCGCT
GCAGCTTCTTCTTGGAGAGCTTCTTCTTGGCGGGCTCGTCATCAGTGGCC
TTGGAGACAAGCTCCTCCTTCTCGGTGAGGATGACCTCGACGTGGCATGG
CGACGACATGTAGGGATTGATGCGACCATGGGCACGGTACGTGCGGCGAC
GCAGGCACTGAGCGCGGTTCACCTGAATGTGGTGGACGACCAGGCGGTCG
GCATCCAGACCCTTGCAATCAGCGTTGGCCTCGGCGTTGCGCAGCAGCTG
CAACAGGAACTCGGCGGACTTCTTGGGCCAGCGACCCTGCGTGGTCTTCC
ACTGCTTGGCCTGGGCACAACGACCGACTCCTCCGTTGAAGCGACGGAAG
GGCACGCACTCCTTCTGGTCGATGACGGCCTTCAGGTAACGCTGGGCACG
GCGCAGGGGCATGCGCTTGATGGCCTGGGCGGTCTCATGTGTGTTCTTGA
AGTGCACACGTAGATTGGGCCCGCGCGCCTTGCACGACTTGGCCACGTTG
TCTGACTCGCGTGAGTAACGGCCCATGTCGACTGATAACT
BO04235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3203-PB | 561 | RpL17-RB | 1..558 | 576..19 | 2765 | 99.8 | Minus |
CG3203-PC | 561 | RpL17-RC | 1..558 | 576..19 | 2765 | 99.8 | Minus |
CG3203-PD | 561 | RpL17-RD | 1..558 | 576..19 | 2765 | 99.8 | Minus |
CG3203-PA | 561 | RpL17-RA | 1..558 | 576..19 | 2765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..587 | 576..19 | 2775 | 99.8 | Minus |
RpL17-RA | 837 | CG3203-RA | 37..594 | 576..19 | 2775 | 99.8 | Minus |
RpL17-RD | 1100 | CG3203-RD | 300..857 | 576..19 | 2775 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741780..6742258 | 19..497 | 2380 | 99.8 | Plus |
X | 23542271 | X | 6743058..6743138 | 496..576 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:41:23 has no hits.
BO04235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:29 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-PB | 1..561 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:57 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3203-PA | 1..561 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:08 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..701 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:12 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..860 | 15..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:12 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6743058..6743138 | 496..576 | 100 | | Plus |
X | 6741776..6742256 | 15..495 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:08 Download gff for
BO04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635809..6636289 | 15..495 | 99 | <- | Plus |
arm_X | 6637091..6637171 | 496..576 | 100 | | Plus |
BO04235.5prime Sequence
590 bp (589 high quality bases) assembled on 2005-11-29
> BO04235.5prime
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAAGCAAGCTTTCTAGACC
BO04235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3203-PB | 561 | RpL17-RB | 1..558 | 17..574 | 2765 | 99.8 | Plus |
CG3203-PC | 561 | RpL17-RC | 1..558 | 17..574 | 2765 | 99.8 | Plus |
CG3203-PD | 561 | RpL17-RD | 1..558 | 17..574 | 2765 | 99.8 | Plus |
CG3203-PA | 561 | RpL17-RA | 1..558 | 17..574 | 2765 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..587 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RA | 837 | CG3203-RA | 37..594 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RD | 1100 | CG3203-RD | 300..857 | 17..574 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741780..6742258 | 574..96 | 2380 | 99.8 | Minus |
X | 23542271 | X | 6743058..6743138 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:16:36 has no hits.
BO04235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:30 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-PB | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:59 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3203-PA | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:36 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..701 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:50 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..860 | 17..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:50 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6741776..6742256 | 98..578 | 99 | <- | Minus |
X | 6743058..6743138 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:36 Download gff for
BO04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635809..6636289 | 98..578 | 99 | <- | Minus |
arm_X | 6637091..6637171 | 17..97 | 100 | | Minus |
BO04235.complete Sequence
592 bp (592 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629683
> BO04235.complete
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAAGCAAGCTTTCTAGACCAT
BO04235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 561 | CG3203-PE | 1..558 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RA | 561 | CG3203-PA | 1..558 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RD | 561 | CG3203-PD | 1..558 | 17..574 | 2775 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..587 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RA | 837 | CG3203-RA | 37..594 | 17..574 | 2775 | 99.8 | Plus |
RpL17-RD | 1100 | CG3203-RD | 300..857 | 17..574 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741780..6742258 | 574..96 | 2380 | 99.8 | Minus |
X | 23542271 | X | 6743058..6743138 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:41:31 has no hits.
BO04235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:50 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:36 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 119..679 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:45 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..698 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:51 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 265..825 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:08 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..857 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:08 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6741778..6742256 | 98..576 | 99 | <- | Minus |
X | 6743058..6743138 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:45 Download gff for
BO04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635811..6636289 | 98..576 | 99 | <- | Minus |
arm_X | 6637091..6637171 | 17..97 | 100 | | Minus |
BO04235.pep Sequence
Translation from 16 to 592
> BO04235.pep
MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKA
VIDQKECVPFRRFNGGVGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEA
NADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVIL
TEKEELVSKATDDEPAKKKLSKKKLQRQKEKMLRSEASFLDH
BO04235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-PE | 186 | CG3203-PE | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PA | 186 | CG3203-PA | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PD | 186 | CG3203-PD | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PC | 186 | CG3203-PC | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PB | 186 | CG3203-PB | 1..186 | 1..186 | 976 | 100 | Plus |