Clone BO04235 Report

Search the DGRC for BO04235

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptRpL17-RB
Protein status:BO04235.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO04235.3prime Sequence

590 bp (589 high quality bases) assembled on 2005-12-01

> BO04235.3prime
ATGGTCTAGAAAGCTTGCTTCAGAACGCAACATCTTCTCCTTTTGGCGCT
GCAGCTTCTTCTTGGAGAGCTTCTTCTTGGCGGGCTCGTCATCAGTGGCC
TTGGAGACAAGCTCCTCCTTCTCGGTGAGGATGACCTCGACGTGGCATGG
CGACGACATGTAGGGATTGATGCGACCATGGGCACGGTACGTGCGGCGAC
GCAGGCACTGAGCGCGGTTCACCTGAATGTGGTGGACGACCAGGCGGTCG
GCATCCAGACCCTTGCAATCAGCGTTGGCCTCGGCGTTGCGCAGCAGCTG
CAACAGGAACTCGGCGGACTTCTTGGGCCAGCGACCCTGCGTGGTCTTCC
ACTGCTTGGCCTGGGCACAACGACCGACTCCTCCGTTGAAGCGACGGAAG
GGCACGCACTCCTTCTGGTCGATGACGGCCTTCAGGTAACGCTGGGCACG
GCGCAGGGGCATGCGCTTGATGGCCTGGGCGGTCTCATGTGTGTTCTTGA
AGTGCACACGTAGATTGGGCCCGCGCGCCTTGCACGACTTGGCCACGTTG
TCTGACTCGCGTGAGTAACGGCCCATGTCGACTGATAACT

BO04235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3203-PB 561 RpL17-RB 1..558 576..19 2765 99.8 Minus
CG3203-PC 561 RpL17-RC 1..558 576..19 2765 99.8 Minus
CG3203-PD 561 RpL17-RD 1..558 576..19 2765 99.8 Minus
CG3203-PA 561 RpL17-RA 1..558 576..19 2765 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..587 576..19 2775 99.8 Minus
RpL17-RA 837 CG3203-RA 37..594 576..19 2775 99.8 Minus
RpL17-RD 1100 CG3203-RD 300..857 576..19 2775 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741780..6742258 19..497 2380 99.8 Plus
X 23542271 X 6743058..6743138 496..576 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:41:23 has no hits.

BO04235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:29 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-PB 1..561 15..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:57 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3203-PA 1..561 15..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:08 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..701 15..576 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:12 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..860 15..576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:12 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6743058..6743138 496..576 100   Plus
X 6741776..6742256 15..495 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:08 Download gff for BO04235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635809..6636289 15..495 99 <- Plus
arm_X 6637091..6637171 496..576 100   Plus

BO04235.5prime Sequence

590 bp (589 high quality bases) assembled on 2005-11-29

> BO04235.5prime
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAAGCAAGCTTTCTAGACC

BO04235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3203-PB 561 RpL17-RB 1..558 17..574 2765 99.8 Plus
CG3203-PC 561 RpL17-RC 1..558 17..574 2765 99.8 Plus
CG3203-PD 561 RpL17-RD 1..558 17..574 2765 99.8 Plus
CG3203-PA 561 RpL17-RA 1..558 17..574 2765 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..587 17..574 2775 99.8 Plus
RpL17-RA 837 CG3203-RA 37..594 17..574 2775 99.8 Plus
RpL17-RD 1100 CG3203-RD 300..857 17..574 2775 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741780..6742258 574..96 2380 99.8 Minus
X 23542271 X 6743058..6743138 97..17 405 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:16:36 has no hits.

BO04235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:30 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-PB 1..561 17..578 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:07:59 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3203-PA 1..561 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:36 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..701 17..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:50 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..860 17..578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:50 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6741776..6742256 98..578 99 <- Minus
X 6743058..6743138 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:36 Download gff for BO04235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635809..6636289 98..578 99 <- Minus
arm_X 6637091..6637171 17..97 100   Minus

BO04235.complete Sequence

592 bp (592 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629683

> BO04235.complete
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAAGCAAGCTTTCTAGACCAT

BO04235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 561 CG3203-PE 1..558 17..574 2775 99.8 Plus
RpL17-RA 561 CG3203-PA 1..558 17..574 2775 99.8 Plus
RpL17-RD 561 CG3203-PD 1..558 17..574 2775 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..587 17..574 2775 99.8 Plus
RpL17-RA 837 CG3203-RA 37..594 17..574 2775 99.8 Plus
RpL17-RD 1100 CG3203-RD 300..857 17..574 2775 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741780..6742258 574..96 2380 99.8 Minus
X 23542271 X 6743058..6743138 97..17 405 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:41:31 has no hits.

BO04235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:50 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 1..561 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:36 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 119..679 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:45 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..698 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:51 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 265..825 17..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:08 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..857 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:08 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
X 6741778..6742256 98..576 99 <- Minus
X 6743058..6743138 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:45 Download gff for BO04235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635811..6636289 98..576 99 <- Minus
arm_X 6637091..6637171 17..97 100   Minus

BO04235.pep Sequence

Translation from 16 to 592

> BO04235.pep
MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKA
VIDQKECVPFRRFNGGVGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEA
NADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVIL
TEKEELVSKATDDEPAKKKLSKKKLQRQKEKMLRSEASFLDH

BO04235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-PE 186 CG3203-PE 1..186 1..186 976 100 Plus
RpL17-PA 186 CG3203-PA 1..186 1..186 976 100 Plus
RpL17-PD 186 CG3203-PD 1..186 1..186 976 100 Plus
RpL17-PC 186 CG3203-PC 1..186 1..186 976 100 Plus
RpL17-PB 186 CG3203-PB 1..186 1..186 976 100 Plus