Clone Sequence Records
BO04237.3prime Sequence
907 bp (812 high quality bases) assembled on 2005-12-01
> BO04237.3prime
ATGGTCTAGAAAGCTTGCATTTTTATTGTTCTTGTAAAAGGCCAGCATCA
GATTGGCCAACTGTTGGGTCTCCGCCAGCGTTACAGCATTGTAGAGGGAG
GCTCGAATGCCGCCCACCGACCGATGACCCTTCAACTGAATCATGCCCTC
GGCCTCGGCTTTGCTCAGGAACTCCTTCTCCAGGGCATCATCTCCACTGG
CACTGCCAATACGGAAGGGCACATTCATGCGCGAACGCACATTGACATCC
ACTGGGCAGTAGTAGAAACCATTCGACTGGTTGATCGTGTCGTAAATCAA
CTTGGACTTGGCTGCCGCCAGCTTGGCCATACCAGCGACTCCTCCGTTCC
GCTTGATCCACTTGAAAACCAGGCCCATCACATAGATGCCAAAGGTCGGC
GGAGTATTTAACAGGGAGTTGTTCTTGTCCATCTGCTCAAAGTTGAGGAT
GGAGGGCGTAATCTTCAAGTGCTTGCCTATCAAATCGTCCCTGACAATGA
TCACCGTGGTGCCCGCTGGTCCGATATTCTTCTGGGCTCCCGCATAGATA
ACGCCAAACTTGGAGACATCGAAGGGACGCGACAGAAAATTGGAGGACAT
ATCGGCCACCAGTGGCACACCGGCTGGAACCTCGGGCACAAAGTCGAACT
CCACGCCCTCTACGGTCTCATTGTCGCAGTAGTAGACATATGAGGCATTT
GGGTCCAGCTTCCAGGTCTCCTGTCGTGGAACAGTTGTATACTTTGCCAA
CTTGGGCAGCACCGCGTTCACAGTGCCGTACTGAGCCGCCTCCTTGGCCG
CCTTGGCCGACCAGGAGCCGGTGATTACATAATCAGCAGTGCCAGTCTTG
CCAATCAAGTTCAGAGCCACTGCAGCGAACTGTCCGGTGCCACCGCCCTG
CATCAGC
BO04237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-PA | 1095 | CG11899-RA | 204..1092 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-RA | 1176 | CG11899-RA | 271..1159 | 907..19 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29200809..29201327 | 907..389 | 2595 | 100 | Minus |
3R | 32079331 | 3R | 29201383..29201753 | 389..19 | 1855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:55:44 has no hits.
BO04237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:33 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-PA | 204..1095 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:04 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-PA | 204..1095 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:28 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 271..1163 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:34 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 271..1163 | 15..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:34 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29200809..29201327 | 389..907 | 100 | -> | Minus |
3R | 29201384..29201757 | 15..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:28 Download gff for
BO04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25026531..25027049 | 389..907 | 100 | -> | Minus |
arm_3R | 25027106..25027479 | 15..388 | 99 | | Minus |
BO04237.5prime Sequence
917 bp (780 high quality bases) assembled on 2005-12-01
> BO04237.5prime
GAAGTTATCAGTCGACATGGTTATCAACTTCGCCGCCGGTCCAGCCAAGT
TGCCCGAAGAGGTACTGAAAGAGGTGCAGGAAAATCTTGTCAACTGCAAT
GGCAGCGGCATCTCGGTCATGGAGATGTCCCATCGCTCCAGCAACTATGC
CAAGATCCATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTGC
CCAGTAACTACAAGATTCTGCTGATGCAGGGCGGTGGCACCGGACAGTTC
GCTGCAGTGGCTCTGAACTTGATTGGCAAGACTGGCACTGCTGATTATGT
AATCACCGGCTCCTGGTCGGCCAAGGCGGCCAAGGAGGCGGCTCAGTACG
GCACTGTGAACGCGGTGCTGCCCAAGTTGGCAAAGTATACAACTGTTCCA
CGACAGGAGACCTGGAAGCTGGACCCAAATGCCTCATATGTCTACTACTG
CGACAATGAGACCGTAGAGGGCGTGGAGTTCGACTTTGTGCCCGAGGTTC
CAGCCGGTGTGCCACTGGTGGCCGATATGTCCTCCAATTTTCTGTCGCGT
CCCTTCGATGTCTCCAAGTTTGGCGTTATCTATGCGGGAGCCCAGAAGAA
TATCGGACCAGCGGGCACCACGGTGATCATTGTCAGGGACGATTTGATAG
GCAAGCACTTGAAGATTACGCCCTCCATCCTCAACTTTGAGCAGATGGAC
AAGAACAACTCCCTGTTAAATACTCCGCCGACCTTTGGCATCTATGTGAT
GGGCCTGGTTTTCAAGTGGATCAAGCGGAACGGAGGAGTCGCTGGTATGG
CCAAGCTGGCGGCAGCCAAGTCCAAGTTGATTTACGACACGATCAACCAG
TCGAATGGTTTCTACTACTGCCCAGTGGATGTCAATGTGCGTTCGCGCAT
GAATGTGCCCTTCCGTA
BO04237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-PA | 1095 | CG11899-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-RA | 1176 | CG11899-RA | 67..968 | 16..917 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29200649..29201327 | 60..738 | 3395 | 100 | Plus |
3R | 32079331 | 3R | 29201383..29201562 | 738..917 | 900 | 100 | Plus |
3R | 32079331 | 3R | 29200520..29200567 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:56:04 has no hits.
BO04237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:33 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:05 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:08 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 61..967 | 6..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:16 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 61..967 | 6..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:16 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29200514..29200565 | 6..61 | 92 | -> | Plus |
3R | 29200651..29201327 | 62..738 | 100 | -> | Plus |
3R | 29201384..29201561 | 739..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:08 Download gff for
BO04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25026236..25026287 | 6..61 | 92 | -> | Plus |
arm_3R | 25026373..25027049 | 62..738 | 100 | -> | Plus |
arm_3R | 25027106..25027283 | 739..916 | 100 | | Plus |
BO04237.complete Sequence
1126 bp (1126 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629684
> BO04237.complete
GAAGTTATCAGTCGACATGGTTATCAACTTCGCCGCCGGTCCAGCCAAGT
TGCCCGAAGAGGTACTGAAAGAGGTGCAGGAAAATCTTGTCAACTGCAAT
GGCAGCGGCATCTCGGTCATGGAGATGTCCCATCGCTCCAGCAACTATGC
CAAGATCCATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTGC
CCAGTAACTACAAGATTCTGCTGATGCAGGGCGGTGGCACCGGACAGTTC
GCTGCAGTGGCTCTGAACTTGATTGGCAAGACTGGCACTGCTGATTATGT
AATCACCGGCTCCTGGTCGGCCAAGGCGGCCAAGGAGGCGGCTCAGTACG
GCACTGTGAACGCGGTGCTGCCCAAGTTGGCAAAGTATACAACTGTTCCA
CGACAGGAGACCTGGAAGCTGGACCCAAATGCCTCATATGTCTACTACTG
CGACAATGAGACCGTAGAGGGCGTGGAGTTCGACTTTGTGCCCGAGGTTC
CAGCCGGTGTGCCACTGGTGGCCGATATGTCCTCCAATTTTCTGTCGCGT
CCCTTCGATGTCTCCAAGTTTGGCGTTATCTATGCGGGAGCCCAGAAGAA
TATCGGACCAGCGGGCACCACGGTGATCATTGTCAGGGACGATTTGATAG
GCAAGCACTTGAAGATTACGCCCTCCATCCTCAACTTTGAGCAGATGGAC
AAGAACAACTCCCTGTTAAATACTCCGCCGACCTTTGGCATCTATGTGAT
GGGCCTGGTTTTCAAGTGGATCAAGCGGAACGGAGGAGTCGCTGGTATGG
CCAAGCTGGCGGCAGCCAAGTCCAAGTTGATTTACGACACGATCAACCAG
TCGAATGGTTTCTACTACTGCCCAGTGGATGTCAATGTGCGTTCGCGCAT
GAATGTGCCCTTCCGTATTGGCAGTGCCAGTGGAGATGATGCCCTGGAGA
AGGAGTTCCTGAGCAAAGCCGAGGCCGAGGGCATGATTCAGTTGAAGGGT
CATCGGTCGGTGGGCGGCATTCGAGCCTCCCTCTACAATGCTGTAACGCT
GGCGGAGACCCAACAGTTGGCCAATCTGATGCTGGCCTTTTACAAGAACA
ATAAAAATGCAAGCTTTCTAGACCAT
BO04237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-RA | 1095 | CG11899-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-RA | 1176 | CG11899-RA | 67..1159 | 16..1108 | 5465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29200649..29201327 | 60..738 | 3395 | 100 | Plus |
3R | 32079331 | 3R | 29201383..29201753 | 738..1108 | 1855 | 100 | Plus |
3R | 32079331 | 3R | 29200520..29200567 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:19:12 has no hits.
BO04237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:07 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 1..1095 | 17..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:23 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 63..1165 | 6..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:12 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 68..1147 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:07 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 63..1165 | 6..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:33 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11899-RA | 68..1147 | 17..1096 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:33 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29200521..29200565 | 17..61 | 100 | -> | Plus |
3R | 29200651..29201327 | 62..738 | 100 | -> | Plus |
3R | 29201384..29201741 | 739..1096 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:12 Download gff for
BO04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25026243..25026287 | 17..61 | 100 | -> | Plus |
arm_3R | 25026373..25027049 | 62..738 | 100 | -> | Plus |
arm_3R | 25027106..25027463 | 739..1096 | 100 | | Plus |
BO04237.pep Sequence
Translation from 16 to 1126
> BO04237.pep
MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDA
TISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITGSW
SAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETV
EGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAG
TTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFK
WIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFR
IGSASGDDALEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQ
LANLMLAFYKNNKNASFLDH
BO04237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11899-PA | 364 | CG11899-PA | 1..364 | 1..364 | 1867 | 100 | Plus |