Clone BO04237 Report

Search the DGRC for BO04237

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG11899-RA
Protein status:BO04237.pep: validated full length
Sequenced Size:1126

Clone Sequence Records

BO04237.3prime Sequence

907 bp (812 high quality bases) assembled on 2005-12-01

> BO04237.3prime
ATGGTCTAGAAAGCTTGCATTTTTATTGTTCTTGTAAAAGGCCAGCATCA
GATTGGCCAACTGTTGGGTCTCCGCCAGCGTTACAGCATTGTAGAGGGAG
GCTCGAATGCCGCCCACCGACCGATGACCCTTCAACTGAATCATGCCCTC
GGCCTCGGCTTTGCTCAGGAACTCCTTCTCCAGGGCATCATCTCCACTGG
CACTGCCAATACGGAAGGGCACATTCATGCGCGAACGCACATTGACATCC
ACTGGGCAGTAGTAGAAACCATTCGACTGGTTGATCGTGTCGTAAATCAA
CTTGGACTTGGCTGCCGCCAGCTTGGCCATACCAGCGACTCCTCCGTTCC
GCTTGATCCACTTGAAAACCAGGCCCATCACATAGATGCCAAAGGTCGGC
GGAGTATTTAACAGGGAGTTGTTCTTGTCCATCTGCTCAAAGTTGAGGAT
GGAGGGCGTAATCTTCAAGTGCTTGCCTATCAAATCGTCCCTGACAATGA
TCACCGTGGTGCCCGCTGGTCCGATATTCTTCTGGGCTCCCGCATAGATA
ACGCCAAACTTGGAGACATCGAAGGGACGCGACAGAAAATTGGAGGACAT
ATCGGCCACCAGTGGCACACCGGCTGGAACCTCGGGCACAAAGTCGAACT
CCACGCCCTCTACGGTCTCATTGTCGCAGTAGTAGACATATGAGGCATTT
GGGTCCAGCTTCCAGGTCTCCTGTCGTGGAACAGTTGTATACTTTGCCAA
CTTGGGCAGCACCGCGTTCACAGTGCCGTACTGAGCCGCCTCCTTGGCCG
CCTTGGCCGACCAGGAGCCGGTGATTACATAATCAGCAGTGCCAGTCTTG
CCAATCAAGTTCAGAGCCACTGCAGCGAACTGTCCGGTGCCACCGCCCTG
CATCAGC

BO04237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-PA 1095 CG11899-RA 204..1092 907..19 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-RA 1176 CG11899-RA 271..1159 907..19 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29200809..29201327 907..389 2595 100 Minus
3R 32079331 3R 29201383..29201753 389..19 1855 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:55:44 has no hits.

BO04237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:33 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-PA 204..1095 16..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:04 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-PA 204..1095 16..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:28 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 271..1163 15..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:34 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 271..1163 15..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:34 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29200809..29201327 389..907 100 -> Minus
3R 29201384..29201757 15..388 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:28 Download gff for BO04237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25026531..25027049 389..907 100 -> Minus
arm_3R 25027106..25027479 15..388 99   Minus

BO04237.5prime Sequence

917 bp (780 high quality bases) assembled on 2005-12-01

> BO04237.5prime
GAAGTTATCAGTCGACATGGTTATCAACTTCGCCGCCGGTCCAGCCAAGT
TGCCCGAAGAGGTACTGAAAGAGGTGCAGGAAAATCTTGTCAACTGCAAT
GGCAGCGGCATCTCGGTCATGGAGATGTCCCATCGCTCCAGCAACTATGC
CAAGATCCATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTGC
CCAGTAACTACAAGATTCTGCTGATGCAGGGCGGTGGCACCGGACAGTTC
GCTGCAGTGGCTCTGAACTTGATTGGCAAGACTGGCACTGCTGATTATGT
AATCACCGGCTCCTGGTCGGCCAAGGCGGCCAAGGAGGCGGCTCAGTACG
GCACTGTGAACGCGGTGCTGCCCAAGTTGGCAAAGTATACAACTGTTCCA
CGACAGGAGACCTGGAAGCTGGACCCAAATGCCTCATATGTCTACTACTG
CGACAATGAGACCGTAGAGGGCGTGGAGTTCGACTTTGTGCCCGAGGTTC
CAGCCGGTGTGCCACTGGTGGCCGATATGTCCTCCAATTTTCTGTCGCGT
CCCTTCGATGTCTCCAAGTTTGGCGTTATCTATGCGGGAGCCCAGAAGAA
TATCGGACCAGCGGGCACCACGGTGATCATTGTCAGGGACGATTTGATAG
GCAAGCACTTGAAGATTACGCCCTCCATCCTCAACTTTGAGCAGATGGAC
AAGAACAACTCCCTGTTAAATACTCCGCCGACCTTTGGCATCTATGTGAT
GGGCCTGGTTTTCAAGTGGATCAAGCGGAACGGAGGAGTCGCTGGTATGG
CCAAGCTGGCGGCAGCCAAGTCCAAGTTGATTTACGACACGATCAACCAG
TCGAATGGTTTCTACTACTGCCCAGTGGATGTCAATGTGCGTTCGCGCAT
GAATGTGCCCTTCCGTA

BO04237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-PA 1095 CG11899-RA 1..901 17..917 4505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-RA 1176 CG11899-RA 67..968 16..917 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29200649..29201327 60..738 3395 100 Plus
3R 32079331 3R 29201383..29201562 738..917 900 100 Plus
3R 32079331 3R 29200520..29200567 16..63 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:56:04 has no hits.

BO04237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:33 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:05 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:08 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 61..967 6..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:16 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 61..967 6..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:16 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29200514..29200565 6..61 92 -> Plus
3R 29200651..29201327 62..738 100 -> Plus
3R 29201384..29201561 739..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:08 Download gff for BO04237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25026236..25026287 6..61 92 -> Plus
arm_3R 25026373..25027049 62..738 100 -> Plus
arm_3R 25027106..25027283 739..916 100   Plus

BO04237.complete Sequence

1126 bp (1126 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629684

> BO04237.complete
GAAGTTATCAGTCGACATGGTTATCAACTTCGCCGCCGGTCCAGCCAAGT
TGCCCGAAGAGGTACTGAAAGAGGTGCAGGAAAATCTTGTCAACTGCAAT
GGCAGCGGCATCTCGGTCATGGAGATGTCCCATCGCTCCAGCAACTATGC
CAAGATCCATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTGC
CCAGTAACTACAAGATTCTGCTGATGCAGGGCGGTGGCACCGGACAGTTC
GCTGCAGTGGCTCTGAACTTGATTGGCAAGACTGGCACTGCTGATTATGT
AATCACCGGCTCCTGGTCGGCCAAGGCGGCCAAGGAGGCGGCTCAGTACG
GCACTGTGAACGCGGTGCTGCCCAAGTTGGCAAAGTATACAACTGTTCCA
CGACAGGAGACCTGGAAGCTGGACCCAAATGCCTCATATGTCTACTACTG
CGACAATGAGACCGTAGAGGGCGTGGAGTTCGACTTTGTGCCCGAGGTTC
CAGCCGGTGTGCCACTGGTGGCCGATATGTCCTCCAATTTTCTGTCGCGT
CCCTTCGATGTCTCCAAGTTTGGCGTTATCTATGCGGGAGCCCAGAAGAA
TATCGGACCAGCGGGCACCACGGTGATCATTGTCAGGGACGATTTGATAG
GCAAGCACTTGAAGATTACGCCCTCCATCCTCAACTTTGAGCAGATGGAC
AAGAACAACTCCCTGTTAAATACTCCGCCGACCTTTGGCATCTATGTGAT
GGGCCTGGTTTTCAAGTGGATCAAGCGGAACGGAGGAGTCGCTGGTATGG
CCAAGCTGGCGGCAGCCAAGTCCAAGTTGATTTACGACACGATCAACCAG
TCGAATGGTTTCTACTACTGCCCAGTGGATGTCAATGTGCGTTCGCGCAT
GAATGTGCCCTTCCGTATTGGCAGTGCCAGTGGAGATGATGCCCTGGAGA
AGGAGTTCCTGAGCAAAGCCGAGGCCGAGGGCATGATTCAGTTGAAGGGT
CATCGGTCGGTGGGCGGCATTCGAGCCTCCCTCTACAATGCTGTAACGCT
GGCGGAGACCCAACAGTTGGCCAATCTGATGCTGGCCTTTTACAAGAACA
ATAAAAATGCAAGCTTTCTAGACCAT

BO04237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-RA 1095 CG11899-PA 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-RA 1176 CG11899-RA 67..1159 16..1108 5465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29200649..29201327 60..738 3395 100 Plus
3R 32079331 3R 29201383..29201753 738..1108 1855 100 Plus
3R 32079331 3R 29200520..29200567 16..63 240 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:19:12 has no hits.

BO04237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:07 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 17..1111 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:23 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 63..1165 6..1112 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:12 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 68..1147 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:07 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 63..1165 6..1112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:33 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 68..1147 17..1096 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:33 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29200521..29200565 17..61 100 -> Plus
3R 29200651..29201327 62..738 100 -> Plus
3R 29201384..29201741 739..1096 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:12 Download gff for BO04237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25026243..25026287 17..61 100 -> Plus
arm_3R 25026373..25027049 62..738 100 -> Plus
arm_3R 25027106..25027463 739..1096 100   Plus

BO04237.pep Sequence

Translation from 16 to 1126

> BO04237.pep
MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDA
TISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITGSW
SAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETV
EGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAG
TTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFK
WIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFR
IGSASGDDALEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQ
LANLMLAFYKNNKNASFLDH

BO04237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-PA 364 CG11899-PA 1..364 1..364 1867 100 Plus