Clone Sequence Records
BO04238.3prime Sequence
882 bp (880 high quality bases) assembled on 2005-12-01
> BO04238.3prime
ATGGTCTAGAAAGCTTGCCATGTAGAGTTTGATCAACTCGTCGCTTACGG
CCGAGGGTGTTAGTCTTCCGAGGTCGGTGAAGAGCAGGGTGATGTAGACG
GGTGGCGTATAGTCGACCAGCGGGTGCACTTTGCTTACATCGTTTAGGTG
TTTGCGGGAGTACTTGTACTCGTTTGGCAGATCGCGCTGATTGAGTGGAT
ACAGACGGCTGAACTTGAAGCTTTCGGCCAGAACGTAGAAAGGTTTCTTC
ATCTCACGGGCGCACAGACCCATGGTGTAGGTGCCAATGCGGTTGATAAT
GCCACCACTCTCCACCACGGCTTCAGCCCCCACAAGCACAAAGTCCACCG
ATTCCATAACATAGCCGGTGGCTGAGTCCAGAATGAGCGTGCAATCGATG
CCGGCCGCATGCAGATCCTTAACCATCTCTTCGCCAGAGTTTCCCGTGCC
GCCCTGCGTCACATAAACGTGGAAGGACTTTTTGTTCTGCGAGGCTGTAA
TCAGCGCCTTGAGGACCACCCGGGATCGGGAGTGCGTCAATATACGGCAG
CCATCGGTAATGAACCTTTGGGCCTGCTGGGCAATCACCTGCCGGGAATT
GAGCAACTTGGTGAGGAAGATTTTTCCGCGATTCAACATAATCTGCCGGC
ACTCCTCCATGTGCTTGTCGTCCAGACTGAGGGTGATGAACCTGCAAAAG
AGCTCTCCGGCAGAAACAATGGCTGCTATAGACAAATCCGTATTCCGCAT
GGCAGCCACCGCTTCCCTCATGGTTGTGTGTAGAATATGAATGGTTCCAA
ATTGTTTCTTTTCCAGGATCATTAGCAGAGTCCTGATAGCCGCAATGCCG
GAGGACAGATCCTTGTCCTCGTCCAGGAGCTG
BO04238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7883-PA | 921 | eIF2B-alpha-RA | 55..918 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-RA | 1005 | CG7883-RA | 116..979 | 882..19 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29934811..29935082 | 163..434 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 29935357..29935570 | 587..800 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 29935137..29935294 | 434..591 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 29934608..29934753 | 19..164 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 29935633..29935714 | 801..882 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:51:15 has no hits.
BO04238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:35 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7883-PA | 55..921 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:07 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7883-PA | 55..921 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:59 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 116..983 | 14..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:25 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 116..983 | 14..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:25 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29934604..29934751 | 14..162 | 98 | <- | Plus |
| 3R | 29934811..29935081 | 163..433 | 100 | <- | Plus |
| 3R | 29935137..29935291 | 434..588 | 100 | <- | Plus |
| 3R | 29935359..29935570 | 589..800 | 100 | <- | Plus |
| 3R | 29935633..29935714 | 801..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:59 Download gff for
BO04238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25761081..25761292 | 589..800 | 100 | <- | Plus |
| arm_3R | 25761355..25761436 | 801..882 | 100 | | Plus |
| arm_3R | 25760326..25760473 | 14..162 | 98 | <- | Plus |
| arm_3R | 25760533..25760803 | 163..433 | 100 | <- | Plus |
| arm_3R | 25760859..25761013 | 434..588 | 100 | <- | Plus |
BO04238.5prime Sequence
903 bp (813 high quality bases) assembled on 2005-11-29
> BO04238.5prime
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCGGAAGACTACACCCTCG
GCC
BO04238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7883-PA | 921 | eIF2B-alpha-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-RA | 1005 | CG7883-RA | 62..949 | 17..903 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29934811..29935082 | 790..519 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 29935357..29935570 | 366..153 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 29935137..29935294 | 519..362 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29934638..29934753 | 903..789 | 530 | 99.1 | Minus |
| 3R | 32079331 | 3R | 29935633..29935735 | 152..50 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:30:24 has no hits.
BO04238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:36 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7883-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:08 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7883-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:21 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 54..949 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:24 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 54..949 | 8..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:24 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29935359..29935570 | 153..364 | 100 | <- | Minus |
| 3R | 29935633..29935734 | 51..152 | 100 | <- | Minus |
| 3R | 29934638..29934751 | 791..903 | 99 | <- | Minus |
| 3R | 29934811..29935081 | 520..790 | 100 | <- | Minus |
| 3R | 29935137..29935291 | 365..519 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:21 Download gff for
BO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25761081..25761292 | 153..364 | 100 | <- | Minus |
| arm_3R | 25761355..25761456 | 51..152 | 100 | <- | Minus |
| arm_3R | 25760360..25760473 | 791..903 | 99 | <- | Minus |
| arm_3R | 25760533..25760803 | 520..790 | 100 | <- | Minus |
| arm_3R | 25760859..25761013 | 365..519 | 100 | <- | Minus |
BO04238.complete Sequence
952 bp (952 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629685
> BO04238.complete
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCGGAAGACTAACACCCTC
GGCCGTAAGCGACGAGTTGATCAAACTCTACATGGCAAGCTTTCTAGACC
AT
BO04238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-RA | 921 | CG7883-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-RA | 1005 | CG7883-RA | 62..979 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29934811..29935082 | 790..519 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 29935357..29935570 | 366..153 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 29935137..29935294 | 519..362 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29934608..29934753 | 934..789 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 29935633..29935735 | 152..50 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:49 has no hits.
BO04238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:51 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:38 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 42..971 | 8..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:55 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 62..979 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:52 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 42..971 | 8..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:37 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 62..979 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:37 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29935359..29935570 | 153..364 | 100 | <- | Minus |
| 3R | 29935633..29935734 | 51..152 | 100 | <- | Minus |
| 3R | 29935794..29935827 | 17..50 | 100 | | Minus |
| 3R | 29935137..29935291 | 365..519 | 100 | <- | Minus |
| 3R | 29934606..29934751 | 791..936 | 98 | <- | Minus |
| 3R | 29934811..29935081 | 520..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:55 Download gff for
BO04238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25760328..25760473 | 791..936 | 98 | <- | Minus |
| arm_3R | 25760533..25760803 | 520..790 | 100 | <- | Minus |
| arm_3R | 25760859..25761013 | 365..519 | 100 | <- | Minus |
| arm_3R | 25761081..25761292 | 153..364 | 100 | <- | Minus |
| arm_3R | 25761355..25761456 | 51..152 | 100 | <- | Minus |
| arm_3R | 25761516..25761549 | 17..50 | 100 | | Minus |
BO04238.pep Sequence
Translation from 16 to 952
> BO04238.pep
MPQITENGQDFDVVKYFLQLLDEDKDLSSGIAAIRTLLMILEKKQFGTIH
ILHTTMREAVAAMRNTDLSIAAIVSAGELFCRFITLSLDDKHMEECRQIM
LNRGKIFLTKLLNSRQVIAQQAQRFITDGCRILTHSRSRVVLKALITASQ
NKKSFHVYVTQGGTGNSGEEMVKDLHAAGIDCTLILDSATGYVMESVDFV
LVGAEAVVESGGIINRIGTYTMGLCAREMKKPFYVLAESFKFSRLYPLNQ
RDLPNEYKYSRKHLNDVSKVHPLVDYTPPVYITLLFTDLGRLTPSAVSDE
LIKLYMASFLDH
BO04238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-PA | 306 | CG7883-PA | 1..306 | 1..306 | 1551 | 100 | Plus |
| eIF2B-delta-PD | 576 | CG10315-PD | 299..564 | 43..297 | 211 | 26.9 | Plus |
| eIF2B-delta-PB | 576 | CG10315-PB | 299..564 | 43..297 | 211 | 26.9 | Plus |
| eIF2B-delta-PC | 576 | CG10315-PC | 299..564 | 43..297 | 211 | 26.9 | Plus |
| eIF2B-delta-PA | 626 | CG10315-PA | 349..614 | 43..297 | 211 | 26.9 | Plus |
