Clone Sequence Records
BO04239.3prime Sequence
845 bp (796 high quality bases) assembled on 2005-12-01
> BO04239.3prime
ATGGTCTAGAAAGCTTGCCTGGACCTTCTTGGCCTCCTTGGGCGCAATGG
GTAGTCGTTCGATGGCCTCCTTGTACAGCTGGTTAAGGCCAAAGGTGGCG
CGCACATTGTCGCTGGAGAAGAAGAACTTTTGCAGTTTACCCTTGGAATC
GACGCAGGGCCTGCGGTCCGTCTCCTTGCCCTGTTGGAACAGGATCACAG
TTGGTAGCTGTCGGGAGAAGCTGCTGTCCGAGATGCGATACTTTTGGGCC
ACGTCCGGAAAGCGTCCAATGTCAATCTTGCCGAACTTCAGGTGGTCCGT
GTTGTACTCGGCGGAGAGCTCAGCAAAAACGGGGGCGAAGTTCACGCAGC
TGGGATTCCACACCGTGTAGAAGCAGATCAGCCAGCTGGTTCGCTTGTCC
CTGGCCAATTCCTCCTCGAAGACCTGTGCGTTGCGGAAGTAGGTGATGTG
CTCGGGTCCGCGATACGAGGGCTCCGGCAGCACCATGCCCACCAGGACGC
ATAGAAGCAGAAAGCCCAGGCCGTAGCGGAAGTCCGCGTAGGCCCACAAA
ATGGCGTTGGCCACTTTGGTGTAGAGGAACGACGAGGCCAAGTAGTTAAT
CATGGTGACACTGCCCGTTTTGCGTGACCGTATCATCACCACGATTAGCA
GGAAGAACAAGATTTCCACCTCACGACTGTCCAGGTCGCATGCTTCATCC
TCTCCGGCGAGAATAAATAGGCGGGTGCAGATGAACTGCGTCTTTTTGGC
CAAAAGGTACGATATGGCCAGGAGTATGTTAACCCAGTAGTATGGCTTGG
CCAGCAGAGCCATCTGCTTCTTCCACGTCATGTCGACTGATAACT
BO04239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-PA | 816 | CG11007-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 1527 | CG11007-RB | 121..933 | 831..19 | 4065 | 100 | Minus |
| CG11007-RA | 1201 | CG11007-RA | 121..933 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19503188..19504000 | 831..19 | 4065 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtak\R1A2 | 1753 | Dtak\R1A2 TAKR1A2 1753bp | 733..773 | 835..795 | 115 | 75.6 | Minus |
BO04239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:36 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:09 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:10 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 118..942 | 9..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:30 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 118..942 | 9..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:30 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19503185..19504009 | 9..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:10 Download gff for
BO04239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15390690..15391514 | 9..834 | 99 | | Minus |
BO04239.5prime Sequence
846 bp (755 high quality bases) assembled on 2005-12-01
> BO04239.5prime
GAAGTTATCAGTCGACATGACGTGGAAGAAGCAGATGGCTCTGCTGGCCA
AGCCATACTACTGGGTTAACATACTCCTGGCCATATCGTACCTTTTGGCC
AAAAAGACGCAGTTCATCTGCACCCGCCTATTTATTCTCGCCGGAGAGGA
TGAAGCATGCGACCTGGACAGTCGTGAGGTGGAAATCTTGTTCTTCCTGC
TAATCGTGGTGATGATACGGTCACGCAAAACGGGCAGTGTCACCATGATT
AACTACTTGGCCTCGTCGTTCCTCTACACCAAAGTGGCCAACGCCATTTT
GTGGGCCTACGCGGACTTCCGCTACGGCCTGGGCTTTCTGCTTCTATGCG
TCCTGGTGGGCATGGTGCTGCCGGAGCCCTCGTATCGCGGACCCGAGCAC
ATCACCTACTTCCGCAACGCACAGGTCTTCGAGGAGGAATTGGCCAGGGA
CAAGCGAACCAGCTGGCTGATCTGCTTCTACACGGTGTGGAATCCCAGCT
GCGTGAACTTCGCCCCCGTTTTTGCTGAGCTCTCCGCCGAGTACAACACG
GACCACCTGAAGTTCGGCAAGATTGACATTGGACGCTTTCCGGACGTGGC
CCAAAAGTATCGCATCTCGGACAGCAGCTTCTCCCGACAGCTACCAACTG
TGATCCTGTTCCAACAGGGCAAGGAGACGGACCGCAGGCCCTGCGTCGAT
TCCAAGGGTAAACTGCAAAAGTTCTTCTTCTCCAGCGACAATGTGCGCGC
CACCTTTGGCCTTAACCAGCTGTACAAGGAGGCCATCGAACGACTACCCA
TTGCGCCCCAGGAGGCCAAGAAGGGCCAGGCAAGCTTTCTAGACCA
BO04239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-PA | 816 | CG11007-RA | 1..808 | 17..824 | 4015 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 1527 | CG11007-RB | 121..933 | 17..829 | 4035 | 99.8 | Plus |
| CG11007-RA | 1201 | CG11007-RA | 121..933 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19503188..19504000 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-13 15:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtak\R1A2 | 1753 | Dtak\R1A2 TAKR1A2 1753bp | 733..773 | 13..53 | 115 | 75.6 | Plus |
BO04239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:37 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:11 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:16 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 118..942 | 14..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:28 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 118..942 | 14..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:28 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19503185..19504009 | 14..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:16 Download gff for
BO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15390690..15391514 | 14..839 | 99 | | Plus |
BO04239.complete Sequence
847 bp (847 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629686
> BO04239.complete
GAAGTTATCAGTCGACATGACGTGGAAGAAGCAGATGGCTCTGCTGGCCA
AGCCATACTACTGGGTTAACATACTCCTGGCCATATCGTACCTTTTGGCC
AAAAAGACGCAGTTCATCTGCACCCGCCTATTTATTCTCGCCGGAGAGGA
TGAAGCATGCGACCTGGACAGTCGTGAGGTGGAAATCTTGTTCTTCCTGC
TAATCGTGGTGATGATACGGTCACGCAAAACGGGCAGTGTCACCATGATT
AACTACTTGGCCTCGTCGTTCCTCTACACCAAAGTGGCCAACGCCATTTT
GTGGGCCTACGCGGACTTCCGCTACGGCCTGGGCTTTCTGCTTCTATGCG
TCCTGGTGGGCATGGTGCTGCCGGAGCCCTCGTATCGCGGACCCGAGCAC
ATCACCTACTTCCGCAACGCACAGGTCTTCGAGGAGGAATTGGCCAGGGA
CAAGCGAACCAGCTGGCTGATCTGCTTCTACACGGTGTGGAATCCCAGCT
GCGTGAACTTCGCCCCCGTTTTTGCTGAGCTCTCCGCCGAGTACAACACG
GACCACCTGAAGTTCGGCAAGATTGACATTGGACGCTTTCCGGACGTGGC
CCAAAAGTATCGCATCTCGGACAGCAGCTTCTCCCGACAGCTACCAACTG
TGATCCTGTTCCAACAGGGCAAGGAGACGGACCGCAGGCCCTGCGTCGAT
TCCAAGGGTAAACTGCAAAAGTTCTTCTTCTCCAGCGACAATGTGCGCGC
CACCTTTGGCCTTAACCAGCTGTACAAGGAGGCCATCGAACGACTACCCA
TTGCGCCCAAGGAGGCCAAGAAGGTCCAGGCAAGCTTTCTAGACCAT
BO04239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 816 | CG11007-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG11007-RA | 816 | CG11007-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 1527 | CG11007-RB | 121..933 | 17..829 | 4065 | 100 | Plus |
| CG11007-RA | 1201 | CG11007-RA | 121..933 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19503188..19504000 | 17..829 | 4065 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtak\R1A2 | 1753 | Dtak\R1A2 TAKR1A2 1753bp | 733..773 | 13..53 | 115 | 75.6 | Plus |
BO04239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:53 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:39 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 107..931 | 14..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:46 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 121..933 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:53 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 107..931 | 14..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:03 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 121..933 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:03 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19503188..19504000 | 17..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:46 Download gff for
BO04239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15390693..15391505 | 17..831 | 99 | | Plus |
BO04239.pep Sequence
Translation from 16 to 847
> BO04239.pep
MTWKKQMALLAKPYYWVNILLAISYLLAKKTQFICTRLFILAGEDEACDL
DSREVEILFFLLIVVMIRSRKTGSVTMINYLASSFLYTKVANAILWAYAD
FRYGLGFLLLCVLVGMVLPEPSYRGPEHITYFRNAQVFEEELARDKRTSW
LICFYTVWNPSCVNFAPVFAELSAEYNTDHLKFGKIDIGRFPDVAQKYRI
SDSSFSRQLPTVILFQQGKETDRRPCVDSKGKLQKFFFSSDNVRATFGLN
QLYKEAIERLPIAPKEAKKVQASFLDH
BO04239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-PB | 271 | CG11007-PB | 1..271 | 1..271 | 1411 | 100 | Plus |
| CG11007-PA | 271 | CG11007-PA | 1..271 | 1..271 | 1411 | 100 | Plus |
