Clone Sequence Records
BO04242.3prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-01
> BO04242.3prime
ATGGTCTAGAAAGCTTGCATCCTTGGGCGGCACATCCTTGCTCAACTCTG
CACGCTTCCTCTGCTCCATGCGCTCCTCTACCTGGTCCAAGCGCTCGCTC
ATGGCATCCAGGGAGCTCAGCAGTCCCGCCTGGATCTCGCCATATCGCTT
CATGGCCAGGACCAGACTCTCCTCGATAAGTTCGCTCTGCTGCGCGTACT
CCCCGTTGTTCTGCGTTATGCCCTTTAGCTGCTCCAGACACTCGGCGGGA
ATGCTGCGGAAGTACTCCGCGCCCAGGGCCGGTTCCAGCTGCTTAATCCT
CTCCAGCTGCTCGGCCTGCGTGTGCAGCTCGGGGGCCACGGCTTGCAGGT
ACACCTCCTTGGAGCGCACCTGCTGGTGCTCCTCCAGGAAGTTGGGGTCC
AGGTACTTCTCCAGCTCGTCAGATCTCTTCACGCACTGCTGCAGTGCAGC
ACTTCCTGTGGTTGCTTCGCCCAGGATGGCGTGTGCCGAGCACAGGGCGT
CGACCACGCCCTCGCCCACCTCAGAGTCCTGGACCGGACCCAGGACTCGT
GTCAGGGCATCGATGCGCTTCTCCAGAATGTCCAGTGCCTCCATGTCGAC
TGATAACT
BO04242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9893-PA | 579 | l(2)06496-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06496-RB | 1086 | CG9893-RB | 84..659 | 594..19 | 2880 | 100 | Minus |
l(2)06496-RA | 1174 | CG9893-RA | 84..659 | 594..19 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23061935..23062510 | 19..594 | 2880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:32:29 has no hits.
BO04242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:40 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9893-PA | 1..579 | 16..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:15 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9893-PA | 1..579 | 16..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:06 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 74..664 | 13..603 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:20 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 74..664 | 13..603 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:20 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23061930..23062520 | 13..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:06 Download gff for
BO04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18949453..18950043 | 13..603 | 98 | | Plus |
BO04242.5prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-01
> BO04242.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGACATTCTGGAGAAGCGCATCG
ATGCCCTGACACGAGTCCTGGGTCCGGTCCAGGACTCTGAGGTGGGCGAG
GGCGTGGTCGACGCCCTGTGCTCGGCACACGCCATCCTGGGCGAAGCAAC
CACAGGAAGTGCTGCACTGCAGCAGTGCGTGAAGAGATCTGACGAGCTGG
AGAAGTACCTGGACCCCAACTTCCTGGAGGAGCACCAGCAGGTGCGCTCC
AAGGAGGTGTACCTGCAAGCCGTGGCCCCCGAGCTGCACACGCAGGCCGA
GCAGCTGGAGAGGATTAAGCAGCTGGAACCGGCCCTGGGCGCGGAGTACT
TCCGCAGCATTCCCGCCGAGTGTCTGGAGCAGCTAAAGGGCATAACGCAG
AACAACGGGGAGTACGCGCAGCAGAGCGAACTTATCGAGGAGAGTCTGGT
CCTGGCCATGAAGCGATATGGCGAGATCCAGGCGGGACTGCTGAGCTCCC
TGGATGCCATGAGCGAGCGCTTGGACCAGGTAGAGGAGCGCATGGAGCAG
AGGAAGCGTGCAGAGTTGAGCAAGGATGTGCCGCCCAAGGATGCAAGCTT
TCTAGACC
BO04242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9893-PA | 579 | l(2)06496-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06496-RB | 1086 | CG9893-RB | 84..659 | 17..592 | 2880 | 100 | Plus |
l(2)06496-RA | 1174 | CG9893-RA | 84..659 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23061935..23062510 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:19:45 has no hits.
BO04242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:41 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9893-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:16 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9893-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:05 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 74..664 | 8..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:05 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 74..664 | 8..598 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:05 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23061930..23062520 | 8..598 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:05 Download gff for
BO04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18949453..18950043 | 8..598 | 98 | | Minus |
BO04242.complete Sequence
610 bp (610 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629687
> BO04242.complete
GAAGTTATCAGTCGACATGGAGGCACTGGACATTCTGGAGAAGCGCATCG
ATGCCCTGACACGAGTCCTGGGTCCGGTCCAGGACTCTGAGGTGGGCGAG
GGCGTGGTCGACGCCCTGTGCTCGGCACACGCCATCCTGGGCGAAGCAAC
CACAGGAAGTGCTGCACTGCAGCAGTGCGTGAAGAGATCTGACGAGCTGG
AGAAGTACCTGGACCCCAACTTCCTGGAGGAGCACCAGCAGGTGCGCTCC
AAGGAGGTGTACCTGCAAGCCGTGGCCCCCGAGCTGCACACGCAGGCCGA
GCAGCTGGAGAGGATTAAGCAGCTGGAACCGGCCCTGGGCGCGGAGTACT
TCCGCAGCATTCCCGCCGAGTGTCTGGAGCAGCTAAAGGGCATAACGCAG
AACAACGGGGAGTACGCGCAGCAGAGCGAACTTATCGAGGAGAGTCTGGT
CCTGGCCATGAAGCGATATGGCGAGATCCAGGCGGGACTGCTGAGCTCCC
TGGATGCCATGAGCGAGCGCTTGGACCAGGTAGAGGAGCGCATGGAGCAG
AGGAAGCGTGCAGAGTTGAGCAAGGATGTGCCGCCCAAGGATGCAAGCTT
TCTAGACCAT
BO04242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06496-RB | 579 | CG9893-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
l(2)06496-RA | 579 | CG9893-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06496-RB | 1086 | CG9893-RB | 84..659 | 17..592 | 2880 | 100 | Plus |
l(2)06496-RA | 1174 | CG9893-RA | 84..659 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23061935..23062510 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:46 has no hits.
BO04242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:12 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:08 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 83..673 | 8..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:53 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 84..659 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:12 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 83..673 | 8..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:10 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06496-RA | 84..659 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:10 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23061932..23062510 | 17..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:53 Download gff for
BO04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18949455..18950033 | 17..594 | 99 | | Minus |
BO04242.pep Sequence
Translation from 16 to 610
> BO04242.pep
MEALDILEKRIDALTRVLGPVQDSEVGEGVVDALCSAHAILGEATTGSAA
LQQCVKRSDELEKYLDPNFLEEHQQVRSKEVYLQAVAPELHTQAEQLERI
KQLEPALGAEYFRSIPAECLEQLKGITQNNGEYAQQSELIEESLVLAMKR
YGEIQAGLLSSLDAMSERLDQVEERMEQRKRAELSKDVPPKDASFLDH
BO04242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06496-PB | 192 | CG9893-PB | 1..192 | 1..192 | 954 | 100 | Plus |
l(2)06496-PA | 192 | CG9893-PA | 1..192 | 1..192 | 954 | 100 | Plus |