Clone BO04244 Report

Search the DGRC for BO04244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta3-RA
Protein status:BO04244.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO04244.3prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-01

> BO04244.3prime
ATGGTCTAGAAAGCTTGCGTCCATGCGGGTCTTCAGTGTGCGCTCCGTGA
TCTTGTCCTTCTCGATAATGTAGACGGTGGCACCCCAACCGCTCATGGCG
TCGCGATCGAATGCGTTCACAATGGACTGGGCGATGACCTCAAACAGCTG
GTCCGGCTCGAGATCGGGTTTCCACAGGGTTTCGCACATGCCATACAATT
GCTCCGCACAGGTGCCGGCCACAACGAAGTCATCGGGTGCGTTGGGGCAG
CCGATCAGGTCCATGTTGCAGATAAAAGGCTCCATGGTCTTGGGATCCAG
GCCAGCAACGACCGGCTCAATGAAGTACGGGCCAAAGCGGTGCTCGTACA
GAAAGCTGGACATCATGGCCGAGAAGGGCTTGGGACACATTTCACGGTTT
TCGCGTGTCTCGTACAGATTCTTGCGGAACATCAGGCGATCGCGAACAGT
AAGGATGTCCGTCTGCAGGCCTGTGAGCCCGAGGAACATCCGTGGGCCGA
TGTGGAACACCTTCTTGAAGTCCGTGGAGATCGTCTGAGCCTGAATGCCG
AATCGGTGATCCGTGGCAATCGCCACGCAGTCCTTTCCGCGCATGGCCAC
TACACATCCTCCGTTGTAGGCTAGAATCGACATGTCGACTGATAACT

BO04244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11981-PA 618 Prosbeta3-RA 1..615 633..19 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta3-RA 914 CG11981-RA 155..770 634..19 3080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9005457..9006072 19..634 3080 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:56:11 has no hits.

BO04244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:42 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11981-PA 1..618 18..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:18 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11981-PA 1..618 18..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:09 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 19..634 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:40 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 19..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:40 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9005457..9006072 19..634 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:09 Download gff for BO04244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4831179..4831794 19..634 100   Plus

BO04244.5prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-01

> BO04244.5prime
GAAGTTATCAGTCGACATGTCGATTCTAGCCTACAACGGAGGATGTGTAG
TGGCCATGCGCGGAAAGGACTGCGTGGCGATTGCCACGGATCACCGATTC
GGCATTCAGGCTCAGACGATCTCCACGGACTTCAAGAAGGTGTTCCACAT
CGGCCCACGGATGTTCCTCGGGCTCACAGGCCTGCAGACGGACATCCTTA
CTGTTCGCGATCGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAA
AACCGTGAAATGTGTCCCAAGCCCTTCTCGGCCATGATGTCCAGCTTTCT
GTACGAGCACCGCTTTGGCCCGTACTTCATTGAGCCGGTCGTTGCTGGCC
TGGATCCCAAGACCATGGAGCCTTTTATCTGCAACATGGACCTGATCGGC
TGCCCCAACGCACCCGATGACTTCGTTGTGGCCGGCACCTGTGCGGAGCA
ATTGTATGGCATGTGCGAAACCCTGTGGAAACCCGATCTCGAGCCGGACC
AGCTGTTTGAGGTCATCGCCCAGTCCATTGTGAACGCATTCGATCGCGAC
GCCATGAGCGGTTGGGGTGCCACCGTCTACATTATCGAGAAGGACAAGAT
CACGGAGCGCACACTGAAGACCCGCATGGACGCAAGCTTTCTAGACC

BO04244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11981-PA 618 Prosbeta3-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta3-RA 914 CG11981-RA 155..770 16..631 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9005457..9006072 631..16 3080 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:30:16 has no hits.

BO04244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:43 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11981-PA 1..618 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:20 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11981-PA 1..618 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:40 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 16..631 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:29 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 16..631 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:29 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9005457..9006072 16..631 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:40 Download gff for BO04244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4831179..4831794 16..631 100   Minus

BO04244.complete Sequence

649 bp (649 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629688

> BO04244.complete
GAAGTTATCAGTCGACATGTCGATTCTAGCCTACAACGGAGGATGTGTAG
TGGCCATGCGCGGAAAGGACTGCGTGGCGATTGCCACGGATCACCGATTC
GGCATTCAGGCTCAGACGATCTCCACGGACTTCAAGAAGGTGTTCCACAT
CGGCCCACGGATGTTCCTCGGGCTCACAGGCCTGCAGACGGACATCCTTA
CTGTTCGCGATCGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAA
AACCGTGAAATGTGTCCCAAGCCCTTCTCGGCCATGATGTCCAGCTTTCT
GTACGAGCACCGCTTTGGCCCGTACTTCATTGAGCCGGTCGTTGCTGGCC
TGGATCCCAAGACCATGGAGCCTTTTATCTGCAACATGGACCTGATCGGC
TGCCCCAACGCACCCGATGACTTCGTTGTGGCCGGCACCTGTGCGGAGCA
ATTGTATGGCATGTGCGAAACCCTGTGGAAACCCGATCTCGAGCCGGACC
AGCTGTTTGAGGTCATCGCCCAGTCCATTGTGAACGCATTCGATCGCGAC
GCCATGAGCGGTTGGGGTGCCACCGTCTACATTATCGAGAAGGACAAGAT
CACGGAGCGCACACTGAAGACCCGCATGGACGCAAGCTTTCTAGACCAT

BO04244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta3-RA 618 CG11981-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta3-RA 914 CG11981-RA 155..770 16..631 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9005457..9006072 631..16 3080 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:55:49 has no hits.

BO04244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:31 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 1..618 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:12 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 16..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:19 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 156..770 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:31 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 155..770 16..631 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:03 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta3-RA 156..770 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:03 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9005455..9006071 17..633 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:19 Download gff for BO04244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4831177..4831793 17..633 99   Minus

BO04244.pep Sequence

Translation from 16 to 649

> BO04244.pep
MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMF
LGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF
GPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMC
ETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTL
KTRMDASFLDH

BO04244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta3-PA 205 CG11981-PA 1..205 1..205 1094 100 Plus
Prosbeta6-PA 235 CG4097-PA 28..235 7..205 197 28.9 Plus