Clone Sequence Records
BO04244.3prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-01
> BO04244.3prime
ATGGTCTAGAAAGCTTGCGTCCATGCGGGTCTTCAGTGTGCGCTCCGTGA
TCTTGTCCTTCTCGATAATGTAGACGGTGGCACCCCAACCGCTCATGGCG
TCGCGATCGAATGCGTTCACAATGGACTGGGCGATGACCTCAAACAGCTG
GTCCGGCTCGAGATCGGGTTTCCACAGGGTTTCGCACATGCCATACAATT
GCTCCGCACAGGTGCCGGCCACAACGAAGTCATCGGGTGCGTTGGGGCAG
CCGATCAGGTCCATGTTGCAGATAAAAGGCTCCATGGTCTTGGGATCCAG
GCCAGCAACGACCGGCTCAATGAAGTACGGGCCAAAGCGGTGCTCGTACA
GAAAGCTGGACATCATGGCCGAGAAGGGCTTGGGACACATTTCACGGTTT
TCGCGTGTCTCGTACAGATTCTTGCGGAACATCAGGCGATCGCGAACAGT
AAGGATGTCCGTCTGCAGGCCTGTGAGCCCGAGGAACATCCGTGGGCCGA
TGTGGAACACCTTCTTGAAGTCCGTGGAGATCGTCTGAGCCTGAATGCCG
AATCGGTGATCCGTGGCAATCGCCACGCAGTCCTTTCCGCGCATGGCCAC
TACACATCCTCCGTTGTAGGCTAGAATCGACATGTCGACTGATAACT
BO04244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11981-PA | 618 | Prosbeta3-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta3-RA | 914 | CG11981-RA | 155..770 | 634..19 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9005457..9006072 | 19..634 | 3080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:56:11 has no hits.
BO04244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:42 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11981-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:18 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11981-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:09 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 19..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:40 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 19..634 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:40 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9005457..9006072 | 19..634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:09 Download gff for
BO04244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4831179..4831794 | 19..634 | 100 | | Plus |
BO04244.5prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-01
> BO04244.5prime
GAAGTTATCAGTCGACATGTCGATTCTAGCCTACAACGGAGGATGTGTAG
TGGCCATGCGCGGAAAGGACTGCGTGGCGATTGCCACGGATCACCGATTC
GGCATTCAGGCTCAGACGATCTCCACGGACTTCAAGAAGGTGTTCCACAT
CGGCCCACGGATGTTCCTCGGGCTCACAGGCCTGCAGACGGACATCCTTA
CTGTTCGCGATCGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAA
AACCGTGAAATGTGTCCCAAGCCCTTCTCGGCCATGATGTCCAGCTTTCT
GTACGAGCACCGCTTTGGCCCGTACTTCATTGAGCCGGTCGTTGCTGGCC
TGGATCCCAAGACCATGGAGCCTTTTATCTGCAACATGGACCTGATCGGC
TGCCCCAACGCACCCGATGACTTCGTTGTGGCCGGCACCTGTGCGGAGCA
ATTGTATGGCATGTGCGAAACCCTGTGGAAACCCGATCTCGAGCCGGACC
AGCTGTTTGAGGTCATCGCCCAGTCCATTGTGAACGCATTCGATCGCGAC
GCCATGAGCGGTTGGGGTGCCACCGTCTACATTATCGAGAAGGACAAGAT
CACGGAGCGCACACTGAAGACCCGCATGGACGCAAGCTTTCTAGACC
BO04244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11981-PA | 618 | Prosbeta3-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta3-RA | 914 | CG11981-RA | 155..770 | 16..631 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9005457..9006072 | 631..16 | 3080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:16 has no hits.
BO04244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:43 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11981-PA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:20 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11981-PA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:40 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 16..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:29 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 16..631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:29 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9005457..9006072 | 16..631 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:40 Download gff for
BO04244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4831179..4831794 | 16..631 | 100 | | Minus |
BO04244.complete Sequence
649 bp (649 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629688
> BO04244.complete
GAAGTTATCAGTCGACATGTCGATTCTAGCCTACAACGGAGGATGTGTAG
TGGCCATGCGCGGAAAGGACTGCGTGGCGATTGCCACGGATCACCGATTC
GGCATTCAGGCTCAGACGATCTCCACGGACTTCAAGAAGGTGTTCCACAT
CGGCCCACGGATGTTCCTCGGGCTCACAGGCCTGCAGACGGACATCCTTA
CTGTTCGCGATCGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAA
AACCGTGAAATGTGTCCCAAGCCCTTCTCGGCCATGATGTCCAGCTTTCT
GTACGAGCACCGCTTTGGCCCGTACTTCATTGAGCCGGTCGTTGCTGGCC
TGGATCCCAAGACCATGGAGCCTTTTATCTGCAACATGGACCTGATCGGC
TGCCCCAACGCACCCGATGACTTCGTTGTGGCCGGCACCTGTGCGGAGCA
ATTGTATGGCATGTGCGAAACCCTGTGGAAACCCGATCTCGAGCCGGACC
AGCTGTTTGAGGTCATCGCCCAGTCCATTGTGAACGCATTCGATCGCGAC
GCCATGAGCGGTTGGGGTGCCACCGTCTACATTATCGAGAAGGACAAGAT
CACGGAGCGCACACTGAAGACCCGCATGGACGCAAGCTTTCTAGACCAT
BO04244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta3-RA | 618 | CG11981-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta3-RA | 914 | CG11981-RA | 155..770 | 16..631 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9005457..9006072 | 631..16 | 3080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:55:49 has no hits.
BO04244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:31 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:12 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 16..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:19 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 156..770 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:31 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 155..770 | 16..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:03 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta3-RA | 156..770 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:03 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9005455..9006071 | 17..633 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:19 Download gff for
BO04244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4831177..4831793 | 17..633 | 99 | | Minus |
BO04244.pep Sequence
Translation from 16 to 649
> BO04244.pep
MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMF
LGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF
GPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMC
ETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTL
KTRMDASFLDH
BO04244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta3-PA | 205 | CG11981-PA | 1..205 | 1..205 | 1094 | 100 | Plus |
Prosbeta6-PA | 235 | CG4097-PA | 28..235 | 7..205 | 197 | 28.9 | Plus |