Clone BO04245 Report

Search the DGRC for BO04245

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptRpL11-RA
Protein status:BO04245.pep: validated full length
Sequenced Size:586

Clone Sequence Records

BO04245.5prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-01

> BO04245.5prime
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGGCAAGCTTTCTAGACC

BO04245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7726-PA 555 RpL11-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..629 17..568 2760 100 Plus
RpL11-RA 710 CG7726-RA 78..629 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 144..444 1505 100 Plus
2R 25286936 2R 19442617..19442742 22..147 630 100 Plus
2R 25286936 2R 19443312..19443437 443..568 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:03:11 has no hits.

BO04245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:45 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:22 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7726-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:19 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..629 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:48 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..629 9..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:48 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19442617..19442740 22..145 100 -> Plus
2R 19442801..19443098 146..443 100 -> Plus
2R 19443313..19443437 444..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:19 Download gff for BO04245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330122..15330245 22..145 100 -> Plus
arm_2R 15330306..15330603 146..443 100 -> Plus
arm_2R 15330818..15330942 444..568 100   Plus

BO04245.3prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-01

> BO04245.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGTGTTCAAGATGATACCATCGTATT
TCTGCTGGAACCACTTCATGGCATCCTCCTTGGTGAGGCGGTGCTGGAAG
CCGACAGTGCCGGACTTGCGCTTCCTGTGGTTCACATTGTAGCCAGGGCG
GCCGAGGACGACGTAGAAGTCCAGACCATAGATACCGATGGAGGGATCGT
ACTTGATGCCCAGATCGATGTGTTCCTGGATGCCGAAACCGAAGTTGCCG
GTGGAGGAGAAGTTCTCCCGACGCAGCTCGTACTCGCGCACCTTCAGGCC
ACGCTCCAGAATCTCCTCAGCCTTGGCGCCGCGCACCGTGCAGTGGACAG
CGATCTTCTCGTTACGGCGAATACCGAACGAACGGACCGTGTAGCGGGCC
TTGGAGAACACTGGCTGCTGACCAGTCAGCTGCTCCAGCACCTTGGCGGC
ACGGGTCAGCCTGTCACCGGACTCGCCCACGCAGATGTTCAGGCAGAGTT
TGCGGATGTGCAGATCCCTCATCGGGTTCTTCGCGGGATCGCGCTTAATC
TTCTTGGTAACCGCCGCCATGTCGACTGATAACT

BO04245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7726-PA 555 RpL11-RA 1..552 570..19 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..629 570..19 2760 100 Minus
RpL11-RA 710 CG7726-RA 78..629 570..19 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 443..143 1505 100 Minus
2R 25286936 2R 19442617..19442742 565..440 630 100 Minus
2R 25286936 2R 19443312..19443437 144..19 630 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:23:42 has no hits.

BO04245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:44 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:21 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7726-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:53 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..629 19..578 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:07 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..629 19..578 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:07 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19442801..19443098 144..441 100 -> Minus
2R 19443313..19443437 19..143 100   Minus
2R 19442617..19442740 442..565 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:53 Download gff for BO04245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330122..15330245 442..565 100 -> Minus
arm_2R 15330306..15330603 144..441 100 -> Minus
arm_2R 15330818..15330942 19..143 100   Minus

BO04245.complete Sequence

586 bp (586 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629689

> BO04245.complete
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGGCAAGCTTTCTAGACCAT

BO04245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 555 CG7726-PB 1..552 17..568 2760 100 Plus
RpL11-RA 555 CG7726-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..629 17..568 2760 100 Plus
RpL11-RA 710 CG7726-RA 78..629 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 144..444 1505 100 Plus
2R 25286936 2R 19442617..19442742 22..147 630 100 Plus
2R 25286936 2R 19443312..19443437 443..568 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:28:21 has no hits.

BO04245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:08 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:25 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 62..622 9..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:16 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 78..629 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:08 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 62..622 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:04 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 78..629 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:04 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19442611..19442740 17..145 96 -> Plus
2R 19442801..19443098 146..443 100 -> Plus
2R 19443313..19443437 444..570 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:16 Download gff for BO04245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330116..15330245 17..145 96 -> Plus
arm_2R 15330306..15330603 146..443 100 -> Plus
arm_2R 15330818..15330942 444..570 98   Plus

BO04245.pep Sequence

Translation from 16 to 586

> BO04245.pep
MAAVTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTG
QQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR
RENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRK
RKSGTVGFQHRLTKEDAMKWFQQKYDGIILNTKKASFLDH

BO04245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-PB 184 CG7726-PB 1..184 1..184 962 100 Plus
RpL11-PA 184 CG7726-PA 1..184 1..184 962 100 Plus