Clone Sequence Records
BO04245.5prime Sequence
584 bp (583 high quality bases) assembled on 2005-12-01
> BO04245.5prime
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGGCAAGCTTTCTAGACC
BO04245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7726-PA | 555 | RpL11-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..629 | 17..568 | 2760 | 100 | Plus |
RpL11-RA | 710 | CG7726-RA | 78..629 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 144..444 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 19442617..19442742 | 22..147 | 630 | 100 | Plus |
2R | 25286936 | 2R | 19443312..19443437 | 443..568 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:03:11 has no hits.
BO04245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:45 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-PA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:22 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7726-PA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:19 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..629 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:48 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..629 | 9..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:48 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442617..19442740 | 22..145 | 100 | -> | Plus |
2R | 19442801..19443098 | 146..443 | 100 | -> | Plus |
2R | 19443313..19443437 | 444..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:19 Download gff for
BO04245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330122..15330245 | 22..145 | 100 | -> | Plus |
arm_2R | 15330306..15330603 | 146..443 | 100 | -> | Plus |
arm_2R | 15330818..15330942 | 444..568 | 100 | | Plus |
BO04245.3prime Sequence
584 bp (583 high quality bases) assembled on 2005-12-01
> BO04245.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGTGTTCAAGATGATACCATCGTATT
TCTGCTGGAACCACTTCATGGCATCCTCCTTGGTGAGGCGGTGCTGGAAG
CCGACAGTGCCGGACTTGCGCTTCCTGTGGTTCACATTGTAGCCAGGGCG
GCCGAGGACGACGTAGAAGTCCAGACCATAGATACCGATGGAGGGATCGT
ACTTGATGCCCAGATCGATGTGTTCCTGGATGCCGAAACCGAAGTTGCCG
GTGGAGGAGAAGTTCTCCCGACGCAGCTCGTACTCGCGCACCTTCAGGCC
ACGCTCCAGAATCTCCTCAGCCTTGGCGCCGCGCACCGTGCAGTGGACAG
CGATCTTCTCGTTACGGCGAATACCGAACGAACGGACCGTGTAGCGGGCC
TTGGAGAACACTGGCTGCTGACCAGTCAGCTGCTCCAGCACCTTGGCGGC
ACGGGTCAGCCTGTCACCGGACTCGCCCACGCAGATGTTCAGGCAGAGTT
TGCGGATGTGCAGATCCCTCATCGGGTTCTTCGCGGGATCGCGCTTAATC
TTCTTGGTAACCGCCGCCATGTCGACTGATAACT
BO04245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7726-PA | 555 | RpL11-RA | 1..552 | 570..19 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..629 | 570..19 | 2760 | 100 | Minus |
RpL11-RA | 710 | CG7726-RA | 78..629 | 570..19 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 443..143 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 19442617..19442742 | 565..440 | 630 | 100 | Minus |
2R | 25286936 | 2R | 19443312..19443437 | 144..19 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:23:42 has no hits.
BO04245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:44 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-PA | 1..555 | 18..570 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:21 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7726-PA | 1..555 | 18..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:53 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..629 | 19..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:07 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..629 | 19..578 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:07 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442801..19443098 | 144..441 | 100 | -> | Minus |
2R | 19443313..19443437 | 19..143 | 100 | | Minus |
2R | 19442617..19442740 | 442..565 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:53 Download gff for
BO04245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330122..15330245 | 442..565 | 100 | -> | Minus |
arm_2R | 15330306..15330603 | 144..441 | 100 | -> | Minus |
arm_2R | 15330818..15330942 | 19..143 | 100 | | Minus |
BO04245.complete Sequence
586 bp (586 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629689
> BO04245.complete
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGGCAAGCTTTCTAGACCAT
BO04245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 555 | CG7726-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
RpL11-RA | 555 | CG7726-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..629 | 17..568 | 2760 | 100 | Plus |
RpL11-RA | 710 | CG7726-RA | 78..629 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 144..444 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 19442617..19442742 | 22..147 | 630 | 100 | Plus |
2R | 25286936 | 2R | 19443312..19443437 | 443..568 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:28:21 has no hits.
BO04245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:08 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:25 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 62..622 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:16 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 78..629 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:08 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 62..622 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:04 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 78..629 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:04 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442611..19442740 | 17..145 | 96 | -> | Plus |
2R | 19442801..19443098 | 146..443 | 100 | -> | Plus |
2R | 19443313..19443437 | 444..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:16 Download gff for
BO04245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330116..15330245 | 17..145 | 96 | -> | Plus |
arm_2R | 15330306..15330603 | 146..443 | 100 | -> | Plus |
arm_2R | 15330818..15330942 | 444..570 | 98 | | Plus |
BO04245.pep Sequence
Translation from 16 to 586
> BO04245.pep
MAAVTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTG
QQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR
RENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRK
RKSGTVGFQHRLTKEDAMKWFQQKYDGIILNTKKASFLDH
BO04245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-PB | 184 | CG7726-PB | 1..184 | 1..184 | 962 | 100 | Plus |
RpL11-PA | 184 | CG7726-PA | 1..184 | 1..184 | 962 | 100 | Plus |