Clone Sequence Records
BO04246.3prime Sequence
491 bp (490 high quality bases) assembled on 2005-12-01
> BO04246.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCTCCTGAGCTTCTTCTGCCGACTGCT
GCAGAGCGTCGTGCTCCACTATGTGGAAAGTTTCGCCCACGTTTACGGCC
TGAACGGGCAGCAGGTGCCGATGGAGGCGACCGCTTTCGATGGGCGCGTC
TAGCTCAAGGAACTGCTCGAAAATGGAAATGGGCACTCCCTCCGAAGACA
GCAATCCCCGCATGCAATCCTGCCGCTTGTCTCGCAGGTTGTCCAACAAC
TTGTTGCCCTTCTGCACCCGGGCCAGCTTCCGCTCAAGTAGCTTTAAATA
GTCGCTGGAATCCGGAAGGGGCTCGATTTTCCCGTCCTTTTGGACGTTGC
TCTCGTTTCCAGAGGGCAAGGGCGTGAAGTTGTCCTCAAAACTTTCGCTA
TTATTCGCGGACCCGGAGATTCCTTGCTTAACTATAGTATTTTTCAAGTG
CCAGGGATCGGCATTGCCAAGTGACATGTCGACTGATAACT
BO04246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7866-PA | 462 | CG7866-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
| CG7866-PB | 771 | CG7866-RB | 1..458 | 477..20 | 2290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 99..559 | 479..19 | 2305 | 100 | Minus |
| CG42557-RA | 1095 | CG42557-RA | 99..559 | 479..19 | 2305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 285..19 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 29933385..29933579 | 479..285 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:00:25 has no hits.
BO04246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:46 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:23 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:12 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 19..479 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:27 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 19..479 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:27 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933385..29933579 | 285..479 | 100 | -> | Minus |
| 3R | 29933637..29933902 | 19..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:12 Download gff for
BO04246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759107..25759301 | 285..479 | 100 | -> | Minus |
| arm_3R | 25759359..25759624 | 19..284 | 100 | | Minus |
BO04246.5prime Sequence
491 bp (490 high quality bases) assembled on 2005-12-01
> BO04246.5prime
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGGCAAGCTTTCTAGACC
BO04246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7866-PA | 462 | CG7866-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
| CG7866-PB | 771 | CG7866-RB | 1..458 | 17..474 | 2290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 99..559 | 15..475 | 2305 | 100 | Plus |
| CG42557-RA | 1095 | CG42557-RA | 99..559 | 15..475 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 209..475 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 29933385..29933579 | 15..209 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:17:16 has no hits.
BO04246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:47 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:25 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:41 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 15..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:31 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 15..475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:31 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933385..29933579 | 15..209 | 100 | -> | Plus |
| 3R | 29933637..29933902 | 210..475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:41 Download gff for
BO04246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759107..25759301 | 15..209 | 100 | -> | Plus |
| arm_3R | 25759359..25759624 | 210..475 | 100 | | Plus |
BO04246.complete Sequence
493 bp (493 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629690
> BO04246.complete
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGGCAAGCTTTCTAGACCAT
BO04246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42557-RA | 462 | CG42557-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 99..559 | 15..475 | 2305 | 100 | Plus |
| CG42557-RA | 1095 | CG42557-RA | 99..559 | 15..475 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 209..475 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 29933385..29933579 | 15..209 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:24 has no hits.
BO04246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:14 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-RA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:34 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-RA | 74..534 | 15..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:42 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 101..559 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:14 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-RA | 74..534 | 15..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:56 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 101..559 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:56 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933387..29933579 | 17..209 | 100 | -> | Plus |
| 3R | 29933637..29933902 | 210..477 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:42 Download gff for
BO04246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759109..25759301 | 17..209 | 100 | -> | Plus |
| arm_3R | 25759359..25759624 | 210..477 | 99 | | Plus |
BO04246.pep Sequence
Translation from 16 to 493
> BO04246.pep
MSLGNADPWHLKNTIVKQGISGSANNSESFEDNFTPLPSGNESNVQKDGK
IEPLPDSSDYLKLLERKLARVQKGNKLLDNLRDKRQDCMRGLLSSEGVPI
SIFEQFLELDAPIESGRLHRHLLPVQAVNVGETFHIVEHDALQQSAEEAQ
EEEASFLDH
BO04246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42557-PA | 153 | CG7866-PA | 1..153 | 1..153 | 787 | 100 | Plus |
