Clone BO04247 Report

Search the DGRC for BO04247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG8009-RB
Protein status:BO04247.pep: Imported from assembly
Sequenced Size:427

Clone Sequence Records

BO04247.3prime Sequence

425 bp (424 high quality bases) assembled on 2005-12-01

> BO04247.3prime
ATGGTCTAGAAAGCTTACTGTACTGTTGTTGTTACTTTGCCGCGGCTTGA
GTATCAGCTTCCCCGTGTCGTCACAGCTCATATTAAAGTCTCCCAGTACC
ATTCGCGTTCTCGATGTAATTATTTGCGGAGCTATGACTAGTTTCTGTAT
GCCCAGGATGAACAGGACGACCAATGTTAGGGTGGCGACTGTGAAGACGG
GATGAATCCAGAGGGACTCCGTTAGCGGTACAACGGTGGTGCGCGGATCG
CGTAGCCAGTACCAGGCGCTGATGGCGGTGCACATGGACATGGCGGAAAG
GACAACTGCAAGAAGCTTGCGCCAGCGGAACGTCGAGGGACGGTACGATG
AAACCACTTCGGTGAGGCGCCGCTCGAAGGCCTTGAGATCTTCGCAGGCT
GACGGTTCCATGTCGACTGATAACT

BO04247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 396 CG8009-RB 1..393 411..19 1965 100 Minus
CG8009-PA 384 CG8009-RA 95..381 305..19 1435 100 Minus
CG8009-PA 384 CG8009-RA 1..94 411..318 470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..551 411..19 1965 100 Minus
CG8009-RA 804 CG8009-RA 159..539 411..19 1775 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639366 171..19 765 100 Minus
3L 28110227 3L 10638554..10638700 317..171 735 100 Minus
3L 28110227 3L 10638421..10638494 391..318 370 100 Minus
Blast to na_te.dros performed 2015-02-13 01:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 328..365 111 79.5 Plus

BO04247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:47 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 15..411 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:26 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 15..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:30 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 13..411 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:33 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 13..411 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:33 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 390..411 100 -> Minus
3L 10638423..10638494 318..389 100 -> Minus
3L 10638554..10638700 171..317 100 -> Minus
3L 10639215..10639371 13..170 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:30 Download gff for BO04247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10631404..10631425 390..411 100 -> Minus
arm_3L 10631523..10631594 318..389 100 -> Minus
arm_3L 10631654..10631800 171..317 100 -> Minus
arm_3L 10632315..10632471 13..170 98   Minus

BO04247.5prime Sequence

425 bp (424 high quality bases) assembled on 2005-12-01

> BO04247.5prime
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACAGTAAGCTTTCTAGACC

BO04247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 396 CG8009-RB 1..393 17..409 1965 100 Plus
CG8009-PA 384 CG8009-RA 95..381 123..409 1435 100 Plus
CG8009-PA 384 CG8009-RA 1..94 17..110 470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..551 17..409 1965 100 Plus
CG8009-RA 804 CG8009-RA 159..539 17..409 1775 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639366 257..409 765 100 Plus
3L 28110227 3L 10638554..10638700 111..257 735 100 Plus
3L 28110227 3L 10638421..10638494 37..110 370 100 Plus
Blast to na_te.dros performed 2015-02-12 16:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 100..63 111 79.5 Minus

BO04247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:48 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..413 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:27 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:14 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:42 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 17..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:42 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 17..38 100 -> Plus
3L 10638423..10638494 39..110 100 -> Plus
3L 10638554..10638700 111..257 100 -> Plus
3L 10639215..10639371 258..415 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:14 Download gff for BO04247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10631654..10631800 111..257 100 -> Plus
arm_3L 10632315..10632471 258..415 98   Plus
arm_3L 10631404..10631425 17..38 100 -> Plus
arm_3L 10631523..10631594 39..110 100 -> Plus

BO04247.complete Sequence

427 bp assembled on 2008-08-15

> BO04247.complete
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACAGTAAGCTTTCTAGACCAT

BO04247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 396 CG8009-PB 1..393 17..409 1965 100 Plus
CG8009-RA 384 CG8009-PA 1..381 17..409 1750 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..551 17..409 1965 100 Plus
CG8009-RA 804 CG8009-RA 159..539 17..409 1750 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639366 257..409 765 100 Plus
3L 28110227 3L 10638554..10638700 111..257 735 100 Plus
3L 28110227 3L 10638421..10638494 37..110 370 100 Plus
Blast to na_te.dros performed 2014-11-27 08:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 100..63 111 79.5 Minus

BO04247.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:01 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 152..549 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:18 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..552 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:47 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 152..545 17..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:02 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..552 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:02 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 17..38 100 -> Plus
3L 10638423..10638494 39..110 100 -> Plus
3L 10638554..10638700 111..257 100 -> Plus
3L 10639215..10639367 258..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:18 Download gff for BO04247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10631523..10631594 39..110 100 -> Plus
arm_3L 10631654..10631800 111..257 100 -> Plus
arm_3L 10632315..10632467 258..411 99   Plus
arm_3L 10631404..10631425 17..38 100 -> Plus

BO04247.pep Sequence

Translation from 16 to 427

> BO04247.pep
MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAW
YWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITS
RTRMVLGDFNMSCDDTGKLILKPRQSNNNSTVSFLDH

BO04247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 131 CG8009-PB 1..131 1..131 673 100 Plus
CG8009-PA 127 CG8009-PA 1..127 1..131 640 96.2 Plus
CG41106-PA 123 CG41106-PA 1..122 1..126 189 36.5 Plus