Clone Sequence Records
BO04247.3prime Sequence
425 bp (424 high quality bases) assembled on 2005-12-01
> BO04247.3prime
ATGGTCTAGAAAGCTTACTGTACTGTTGTTGTTACTTTGCCGCGGCTTGA
GTATCAGCTTCCCCGTGTCGTCACAGCTCATATTAAAGTCTCCCAGTACC
ATTCGCGTTCTCGATGTAATTATTTGCGGAGCTATGACTAGTTTCTGTAT
GCCCAGGATGAACAGGACGACCAATGTTAGGGTGGCGACTGTGAAGACGG
GATGAATCCAGAGGGACTCCGTTAGCGGTACAACGGTGGTGCGCGGATCG
CGTAGCCAGTACCAGGCGCTGATGGCGGTGCACATGGACATGGCGGAAAG
GACAACTGCAAGAAGCTTGCGCCAGCGGAACGTCGAGGGACGGTACGATG
AAACCACTTCGGTGAGGCGCCGCTCGAAGGCCTTGAGATCTTCGCAGGCT
GACGGTTCCATGTCGACTGATAACT
BO04247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 396 | CG8009-RB | 1..393 | 411..19 | 1965 | 100 | Minus |
CG8009-PA | 384 | CG8009-RA | 95..381 | 305..19 | 1435 | 100 | Minus |
CG8009-PA | 384 | CG8009-RA | 1..94 | 411..318 | 470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..551 | 411..19 | 1965 | 100 | Minus |
CG8009-RA | 804 | CG8009-RA | 159..539 | 411..19 | 1775 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639366 | 171..19 | 765 | 100 | Minus |
3L | 28110227 | 3L | 10638554..10638700 | 317..171 | 735 | 100 | Minus |
3L | 28110227 | 3L | 10638421..10638494 | 391..318 | 370 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 328..365 | 111 | 79.5 | Plus |
BO04247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:47 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:26 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:30 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 13..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:33 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 13..411 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:33 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 390..411 | 100 | -> | Minus |
3L | 10638423..10638494 | 318..389 | 100 | -> | Minus |
3L | 10638554..10638700 | 171..317 | 100 | -> | Minus |
3L | 10639215..10639371 | 13..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:30 Download gff for
BO04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10631404..10631425 | 390..411 | 100 | -> | Minus |
arm_3L | 10631523..10631594 | 318..389 | 100 | -> | Minus |
arm_3L | 10631654..10631800 | 171..317 | 100 | -> | Minus |
arm_3L | 10632315..10632471 | 13..170 | 98 | | Minus |
BO04247.5prime Sequence
425 bp (424 high quality bases) assembled on 2005-12-01
> BO04247.5prime
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACAGTAAGCTTTCTAGACC
BO04247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 396 | CG8009-RB | 1..393 | 17..409 | 1965 | 100 | Plus |
CG8009-PA | 384 | CG8009-RA | 95..381 | 123..409 | 1435 | 100 | Plus |
CG8009-PA | 384 | CG8009-RA | 1..94 | 17..110 | 470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..551 | 17..409 | 1965 | 100 | Plus |
CG8009-RA | 804 | CG8009-RA | 159..539 | 17..409 | 1775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639366 | 257..409 | 765 | 100 | Plus |
3L | 28110227 | 3L | 10638554..10638700 | 111..257 | 735 | 100 | Plus |
3L | 28110227 | 3L | 10638421..10638494 | 37..110 | 370 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 100..63 | 111 | 79.5 | Minus |
BO04247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:48 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:27 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:14 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:42 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 17..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:42 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 17..38 | 100 | -> | Plus |
3L | 10638423..10638494 | 39..110 | 100 | -> | Plus |
3L | 10638554..10638700 | 111..257 | 100 | -> | Plus |
3L | 10639215..10639371 | 258..415 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:14 Download gff for
BO04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10631654..10631800 | 111..257 | 100 | -> | Plus |
arm_3L | 10632315..10632471 | 258..415 | 98 | | Plus |
arm_3L | 10631404..10631425 | 17..38 | 100 | -> | Plus |
arm_3L | 10631523..10631594 | 39..110 | 100 | -> | Plus |
BO04247.complete Sequence
427 bp assembled on 2008-08-15
> BO04247.complete
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACAGTAAGCTTTCTAGACCAT
BO04247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 396 | CG8009-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
CG8009-RA | 384 | CG8009-PA | 1..381 | 17..409 | 1750 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..551 | 17..409 | 1965 | 100 | Plus |
CG8009-RA | 804 | CG8009-RA | 159..539 | 17..409 | 1750 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639366 | 257..409 | 765 | 100 | Plus |
3L | 28110227 | 3L | 10638554..10638700 | 111..257 | 735 | 100 | Plus |
3L | 28110227 | 3L | 10638421..10638494 | 37..110 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 100..63 | 111 | 79.5 | Minus |
BO04247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:01 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 152..549 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:18 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..552 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:47 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 152..545 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:02 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..552 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:02 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 17..38 | 100 | -> | Plus |
3L | 10638423..10638494 | 39..110 | 100 | -> | Plus |
3L | 10638554..10638700 | 111..257 | 100 | -> | Plus |
3L | 10639215..10639367 | 258..411 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:18 Download gff for
BO04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10631523..10631594 | 39..110 | 100 | -> | Plus |
arm_3L | 10631654..10631800 | 111..257 | 100 | -> | Plus |
arm_3L | 10632315..10632467 | 258..411 | 99 | | Plus |
arm_3L | 10631404..10631425 | 17..38 | 100 | -> | Plus |
BO04247.pep Sequence
Translation from 16 to 427
> BO04247.pep
MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAW
YWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITS
RTRMVLGDFNMSCDDTGKLILKPRQSNNNSTVSFLDH
BO04247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 131 | CG8009-PB | 1..131 | 1..131 | 673 | 100 | Plus |
CG8009-PA | 127 | CG8009-PA | 1..127 | 1..131 | 640 | 96.2 | Plus |
CG41106-PA | 123 | CG41106-PA | 1..122 | 1..126 | 189 | 36.5 | Plus |