Clone Sequence Records
BO04248.3prime Sequence
344 bp (343 high quality bases) assembled on 2005-12-01
> BO04248.3prime
ATGGTCTAGAAAGCTTGCGGTATTGGAACTAAATGCCGCCTGACGGAGCA
GCACATAGATCTTCTCCTTGATCCAATCCTTATTGTAGGGCGCATAGGTA
TTGGTGCTCTTCTGGTAAACCATGCAGCTAATGTCCACCATTGTGTCGAT
GAAATCGAATAGCTGGCTAATGTCATACGTAATGGTCGGAGTGTTTGGAT
TGCGGCGCTTCAGGTGCTCCTCGTAGATCTTGCACACGCCCTCCATGCAC
TCGTTGACGCTCTCGTAGTCACAGTAAGTGCGGGTCTCCGGACGAGCACC
CGGCTGTACCAATAGGATGGTGTGCGACATGTCGACTGATAACT
BO04248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1871-PA | 315 | e(r)-RA | 1..312 | 330..19 | 1560 | 100 | Minus |
CG1871-PB | 315 | e(r)-RB | 1..312 | 330..19 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..624 | 331..19 | 1565 | 100 | Minus |
e(r)-RD | 1191 | CG1871-RD | 171..483 | 331..19 | 1565 | 100 | Minus |
e(r)-RC | 1199 | CG1871-RC | 179..491 | 331..19 | 1565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905067..8905379 | 19..331 | 1565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:32:38 has no hits.
BO04248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:49 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-PA | 1..315 | 15..330 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:29 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1871-PB | 1..315 | 15..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:08 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..496 | 14..341 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:21 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..496 | 14..341 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:21 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905062..8905387 | 14..338 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:08 Download gff for
BO04248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799095..8799420 | 14..338 | 98 | | Plus |
BO04248.5prime Sequence
344 bp (343 high quality bases) assembled on 2005-12-01
> BO04248.5prime
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCGCAAGCTTTCTAGACC
BO04248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1871-PA | 315 | e(r)-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
CG1871-PB | 315 | e(r)-RB | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..624 | 16..328 | 1565 | 100 | Plus |
e(r)-RD | 1191 | CG1871-RD | 171..483 | 16..328 | 1565 | 100 | Plus |
e(r)-RC | 1199 | CG1871-RC | 179..491 | 16..328 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905067..8905379 | 328..16 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:41:50 has no hits.
BO04248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:50 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-PA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:30 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1871-PB | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:12 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..496 | 6..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:50 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..496 | 6..333 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:50 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905062..8905387 | 9..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:12 Download gff for
BO04248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799095..8799420 | 9..333 | 98 | | Minus |
BO04248.complete Sequence
346 bp (346 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629691
> BO04248.complete
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCGCAAGCTTTCTAGACCAT
BO04248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 315 | CG1871-PE | 1..312 | 17..328 | 1560 | 100 | Plus |
e(r)-RD | 315 | CG1871-PD | 1..312 | 17..328 | 1560 | 100 | Plus |
e(r)-RC | 315 | CG1871-PC | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..624 | 16..328 | 1565 | 100 | Plus |
e(r)-RD | 1191 | CG1871-RD | 171..483 | 16..328 | 1565 | 100 | Plus |
e(r)-RC | 1199 | CG1871-RC | 179..491 | 16..328 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905067..8905379 | 328..16 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:07:39 has no hits.
BO04248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:32 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RB | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:30 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RA | 220..543 | 6..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:22 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 180..491 | 17..330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:32 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RA | 220..543 | 6..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:56 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 180..491 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:56 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905065..8905378 | 17..330 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:22 Download gff for
BO04248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799098..8799411 | 17..330 | 99 | | Minus |
BO04248.pep Sequence
Translation from 16 to 346
> BO04248.pep
MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTI
TYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAF
SSNTASFLDH
BO04248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-PE | 104 | CG1871-PE | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PD | 104 | CG1871-PD | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PC | 104 | CG1871-PC | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PB | 104 | CG1871-PB | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PA | 104 | CG1871-PA | 1..104 | 1..104 | 560 | 100 | Plus |