Clone BO04249 Report

Search the DGRC for BO04249

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptGstE7-RA
Protein status:BO04249.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO04249.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-01

> BO04249.3prime
ATGGTCTAGAAAGCTTGCATTCGATGCGAAAGTGAAATTATACTCTCTGA
TGAAGGACTCAAATGTACGAGCACCATTGCCGTTGGCCTCCTCGTAGTAG
GGCAGCTTTTGGAGTCTCTTGAACCATGCAGCTATCCGAGGATATTTGGT
CGTGTCCACCTTTACGAAGACCTCCAACGAGGACACAGTTGATATGATAC
TAAAGTCGGCAATCGTAAGCTGATTGCCGGCGACGTAGTCATTTCCAGCA
AGGAATTTCTCCAGGAAGTCATAGACCTCAATAATCGCATCGTAACGCTC
CTTGGGAATCATCGTTTGCTTACCGGCGAAAAGTGGCTTGGTAATGCTTC
TCAGTGCATTAGCGAAGATCACTCCGGACTCGAAATGCAATCGCTGATCC
ACGACAGCACGCTGGAGGAGATCTTTCGGATAGAGACTGTCCGTTTTGCC
GTATTTGGACACCAGATAGGCAATAATGGCATGTGAGTCCCAGATATAAT
GTCCATCGTCCTCCAACGTGGGCACCGTGTGCTGTGGATTCTTCTTCAGA
AACTCCTCAGAGAAGTTTTCCTTGGCCCGAGTGTTTACCTCCACGAATTC
GTAGGGAACCTCCAGGGCAGCCAAGGTCAATTTGACGGCACGAACTGGTG
GACTTGCCTCCAAGCCGTACAGTATCAATTTGGGCATGTCGACTGATAAC
T

BO04249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17531-PA 672 GstE7-RA 1..669 687..19 3345 100 Minus
CG17533-PA 669 GstE8-RA 256..314 432..374 170 91.5 Minus
CG17533-PA 669 GstE8-RA 144..206 544..482 140 88.8 Minus
CG17525-PA 669 GstE4-RA 141..167 547..521 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstE7-RA 765 CG17531-RA 32..700 687..19 3345 100 Minus
GstE8-RB 1122 CG17533-RB 26..427 688..287 755 79.8 Minus
GstE8-RA 758 CG17533-RA 26..427 688..287 755 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406955..18407623 687..19 3345 100 Minus
2R 25286936 2R 18407859..18408260 688..287 735 78.9 Minus
2R 25286936 2R 18404667..18405121 654..200 565 74.9 Minus
2R 25286936 2R 18406179..18406652 550..77 480 73.4 Minus
2R 25286936 2R 18397152..18397321 374..543 250 76.5 Plus
2R 25286936 2R 18403415..18403599 547..363 205 74.1 Minus
Blast to na_te.dros performed on 2015-02-13 13:16:51 has no hits.

BO04249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:51 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-PA 1..672 15..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:32 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17531-PA 1..672 15..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:45 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..703 15..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:40 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..703 15..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:40 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406955..18407626 15..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:45 Download gff for BO04249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14294460..14295131 15..687 99   Minus

BO04249.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-01

> BO04249.5prime
GAAGTTATCAGTCGACATGCCCAAATTGATACTGTACGGCTTGGAGGCAA
GTCCACCAGTTCGTGCCGTCAAATTGACCTTGGCTGCCCTGGAGGTTCCC
TACGAATTCGTGGAGGTAAACACTCGGGCCAAGGAAAACTTCTCTGAGGA
GTTTCTGAAGAAGAATCCACAGCACACGGTGCCCACGTTGGAGGACGATG
GACATTATATCTGGGACTCACATGCCATTATTGCCTATCTGGTGTCCAAA
TACGGCAAAACGGACAGTCTCTATCCGAAAGATCTCCTCCAGCGTGCTGT
CGTGGATCAGCGATTGCATTTCGAGTCCGGAGTGATCTTCGCTAATGCAC
TGAGAAGCATTACCAAGCCACTTTTCGCCGGTAAGCAAACGATGATTCCC
AAGGAGCGTTACGATGCGATTATTGAGGTCTATGACTTCCTGGAGAAATT
CCTTGCTGGAAATGACTACGTCGCCGGCAATCAGCTTACGATTGCCGACT
TTAGTATCATATCAACTGTGTCCTCGTTGGAGGTCTTCGTAAAGGTGGAC
ACGACCAAATATCCTCGGATAGCTGCATGGTTCAAGAGACTCCAAAAGCT
GCCCTACTACGAGGAGGCCAACGGCAATGGTGCTCGTACATTTGAGTCCT
TCATCAGAGAGTATAATTTCACTTTCGCATCGAATGCAAGCTTTCTAGAC
C

BO04249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17531-PA 672 GstE7-RA 1..669 17..685 3345 100 Plus
CG17533-PA 669 GstE8-RA 256..314 272..330 170 91.5 Plus
CG17533-PA 669 GstE8-RA 144..206 160..222 140 88.8 Plus
CG17525-PA 669 GstE4-RA 141..167 157..183 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
GstE7-RA 765 CG17531-RA 32..700 17..685 3345 100 Plus
GstE8-RB 1122 CG17533-RB 26..427 16..417 755 79.8 Plus
GstE8-RA 758 CG17533-RA 26..427 16..417 755 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406955..18407623 17..685 3345 100 Plus
2R 25286936 2R 18407859..18408260 16..417 735 78.9 Plus
2R 25286936 2R 18404667..18405121 50..504 565 74.9 Plus
2R 25286936 2R 18406179..18406652 154..627 480 73.4 Plus
2R 25286936 2R 18397152..18397321 330..161 250 76.5 Minus
2R 25286936 2R 18403415..18403599 157..341 205 74.1 Plus
Blast to na_te.dros performed on 2015-02-11 04:42:36 has no hits.

BO04249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:52 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-PA 1..672 17..689 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:33 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17531-PA 1..672 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:13 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..703 17..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:08 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..703 17..689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:08 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406955..18407626 17..689 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:13 Download gff for BO04249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14294460..14295131 17..689 99   Plus

BO04249.complete Sequence

703 bp (703 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629692

> BO04249.complete
GAAGTTATCAGTCGACATGCCCAAATTGATACTGTACGGCTTGGAGGCAA
GTCCACCAGTTCGTGCCGTCAAATTGACCTTGGCTGCCCTGGAGGTTCCC
TACGAATTCGTGGAGGTAAACACTCGGGCCAAGGAAAACTTCTCTGAGGA
GTTTCTGAAGAAGAATCCACAGCACACGGTGCCCACGTTGGAGGACGATG
GACATTATATCTGGGACTCACATGCCATTATTGCCTATCTGGTGTCCAAA
TACGGCAAAACGGACAGTCTCTATCCGAAAGATCTCCTCCAGCGTGCTGT
CGTGGATCAGCGATTGCATTTCGAGTCCGGAGTGATCTTCGCTAATGCAC
TGAGAAGCATTACCAAGCCACTTTTCGCCGGTAAGCAAACGATGATTCCC
AAGGAGCGTTACGATGCGATTATTGAGGTCTATGACTTCCTGGAGAAATT
CCTTGCTGGAAATGACTACGTCGCCGGCAATCAGCTTACGATTGCCGACT
TTAGTATCATATCAACTGTGTCCTCGTTGGAGGTCTTCGTAAAGGTGGAC
ACGACCAAATATCCTCGGATAGCTGCATGGTTCAAGAGACTCCAAAAGCT
GCCCTACTACGAGGAGGCCAACGGCAATGGTGCTCGTACATTTGAGTCCT
TCATCAGAGAGTATAATTTCACTTTCGCATCGAATGCAAGCTTTCTAGAC
CAT

BO04249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstE7-RA 672 CG17531-PA 1..669 17..685 3345 100 Plus
GstE8-RB 669 CG17533-PB 28..401 44..417 730 79.7 Plus
GstE8-RA 669 CG17533-PA 28..401 44..417 730 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
GstE7-RA 765 CG17531-RA 32..700 17..685 3345 100 Plus
GstE8-RB 1122 CG17533-RB 26..427 16..417 735 78.9 Plus
GstE8-RA 758 CG17533-RA 26..427 16..417 735 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406955..18407623 17..685 3345 100 Plus
2R 25286936 2R 18407859..18408260 16..417 735 78.9 Plus
2R 25286936 2R 18404667..18405121 50..504 565 74.9 Plus
2R 25286936 2R 18406179..18406652 154..627 480 73.4 Plus
2R 25286936 2R 18397152..18397321 330..161 250 76.5 Minus
2R 25286936 2R 18403415..18403599 157..341 205 74.1 Plus
Blast to na_te.dros performed on 2014-11-27 06:55:46 has no hits.

BO04249.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:09 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 1..672 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:27 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 21..692 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:15 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..700 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:10 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 21..692 17..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:16 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
GstE7-RA 32..700 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:16 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18406955..18407623 17..687 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:15 Download gff for BO04249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14294460..14295128 17..687 99   Plus

BO04249.pep Sequence

Translation from 16 to 703

> BO04249.pep
MPKLILYGLEASPPVRAVKLTLAALEVPYEFVEVNTRAKENFSEEFLKKN
PQHTVPTLEDDGHYIWDSHAIIAYLVSKYGKTDSLYPKDLLQRAVVDQRL
HFESGVIFANALRSITKPLFAGKQTMIPKERYDAIIEVYDFLEKFLAGND
YVAGNQLTIADFSIISTVSSLEVFVKVDTTKYPRIAAWFKRLQKLPYYEE
ANGNGARTFESFIREYNFTFASNASFLDH

BO04249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
GstE7-PA 223 CG17531-PA 1..223 1..223 1148 100 Plus
GstE8-PB 222 CG17533-PB 1..222 1..222 867 71.2 Plus
GstE8-PA 222 CG17533-PA 1..222 1..222 867 71.2 Plus
GstE5-PA 222 CG17527-PA 1..222 1..222 846 69.8 Plus
GstE6-PA 222 CG17530-PA 1..220 1..220 826 70 Plus