Clone Sequence Records
BO04251.3prime Sequence
920 bp (824 high quality bases) assembled on 2005-12-01
> BO04251.3prime
ATGGTCTAGAAAGCTTGCCTTGAGAGCAAATTTCACGGCCACTACAATAC
TTGAAACAAAGATTAGTGCGAGGGCCAGCTTCCTAAGATTGGCACGATTC
ACGCCTTTGATGGTCCGTACTACTTCTATATTTAAGCGAAATACGTTGCG
ACTTTCCTCAATAAAAGCAGCACGCAAATCATCGTCAAAAGCTCCGTAGT
GATTGTTGAAAACGCGCCTTAGTTTGGCCTTTAAGACAGAGATCTTCTCA
GGAAAATATGTGGCCTCACATCCCGGCGGGCAAATGGTAACCTGGGCAGG
CATTGGCCTGGCCTCCAAGTCGTCTTTGTCTACAGAGCCATCGGCAGCTC
TGGCGGTGGCCAACTCTGCCTCCTTGTCGGCCTGCTTCTGCTGCTCCTCG
TCATCGTTCTTTGAAAAGATCCACATTTTACGAGCGATCATACGCTTCTT
CTGCAACATTTGTCCGCCGGACATCAAAGCCATGTACATCTGATAGGAGT
AGGCGAACAGCAAGAGTTCGTTCTGTGCGGCAATCTTTTCCAGATGCTCG
AGATATTTCTGGACCGCCGGGCGAATTTCGTAGTCCTTCCTCCAATCGGA
ACCGTAGAAATAGGCAAAATCCCTTTCAAATGCCGCTGTTCTGTGGAATT
CTTTGGGCAGCAGGCGCTCCGGCAGATGGGTCTCAAAGAATTTGTACAGT
TCGTAGAAGGCCAGGAGTCCATCATACCAGACCTCGTCATCAGAAAGGGC
AAGTGCGATCTTTGCATTCACTAGAACATCAGTAAGATTATGCACATCTT
TTGTGGCTTTACGCAACTCCTTTGTGAACGCCATGTCTACGATTTCCACA
TCCTCCACATTCTCGGAGACCTGACTGTCCGCTATTGTTTCTTCGCTCGC
TGACATGTCGACTGATAACT
BO04251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14716-PA | 891 | Ho-RA | 1..888 | 906..19 | 4390 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ho-RA | 1123 | CG14716-RA | 127..1016 | 908..19 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11680083..11680589 | 750..244 | 2535 | 100 | Minus |
3R | 32079331 | 3R | 11680643..11680869 | 245..19 | 1120 | 99.6 | Minus |
3R | 32079331 | 3R | 11679869..11680027 | 908..750 | 780 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-11 23:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 3069..3122 | 755..701 | 110 | 69.1 | Minus |
BO04251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:57:56 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:38 Download gff for
BO04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14716-PA | 1..891 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:29 Download gff for
BO04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 123..1020 | 14..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:08 Download gff for
BO04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 123..1020 | 14..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:08 Download gff for
BO04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11679865..11680027 | 750..913 | 97 | -> | Minus |
3R | 11680084..11680589 | 244..749 | 100 | -> | Minus |
3R | 11680645..11680873 | 14..243 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:29 Download gff for
BO04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7505587..7505749 | 750..913 | 97 | -> | Minus |
arm_3R | 7505806..7506311 | 244..749 | 100 | -> | Minus |
arm_3R | 7506367..7506595 | 14..243 | 98 | | Minus |
BO04251.5prime Sequence
921 bp (772 high quality bases) assembled on 2005-11-29
> BO04251.5prime
GAAGTTATCAGTCGACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTC
AGGTCTCCGAGAATGTGGAGGATGTGGAATTCGTAGACATGGCGTTCACA
AAGGAGTTGCGTAAAGCCACAAAAGATGTGCATAATCTTACTGATGTTCT
AGTGAATGCAAAGATCGCACTTGCCCTTTCTGATGACGAGGTCTGGTATG
ATGGACTCCTGGCCTTCTACGAACTGTACAAATTCTTTGAGACCCATCTG
CCGGAGCGCCTGCTGCCCAAAGAATTCCACAGAACAGCGGCATTTGAAAG
GGATTTTGCCTATTTCTACGGTTCCGATTGGAGGAAGGACTACGAAATTC
GCCCGGCGGTCCAGAAATATCTCGAGCATCTGGAAAAGATTGCCGCACAG
AACGAACTCTTGCTGTTCGCCTACTCCTATCAGATGTACATGGCTTTGAT
GTCCGGCGGACAAATGTTGCAGAAGAAGCGTATGATCGCTCGTAAAATGT
GGATCTTTTCAAAGAACGATGACGAGGAGCAGCAGAAGCAGGCCGACAAG
GAGGCAGAGTTGGCCACCGCCAGAGCTGCCGATGGCTCTGTAGACAAAGA
CGACTTGGAGGCCAGGCCAATGCCTGCCCAGGTTACCATTTGCCCGCCGG
GATGTGAGGCCACATATTTTCCTGAGAAGATCTCTGTCTTAAAGGCCAAA
CTAAGGCGCGTTTTCAACAATCACTACGGAGCTTTTGACGATGATTTGCG
TGCTGCTTTTATTGAGGAAAGTCGCAACGTATTTCGCTTAAATATAGAAG
TAGTACGGACCATCAAAGGCGTGAATCGTGGCAATCTTAGGAAGCTGGCC
CTCGCACTAATCTTTGTTTTCAGTATTGTAGTGGCCGTGAAATTTGCTCT
CAAGGCAAGCTTTTCTAGACC
BO04251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14716-PA | 891 | Ho-RA | 1..888 | 17..904 | 4340 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ho-RA | 1123 | CG14716-RA | 127..1016 | 15..904 | 4390 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11680083..11680589 | 173..679 | 2535 | 100 | Plus |
3R | 32079331 | 3R | 11680643..11680869 | 678..904 | 1075 | 98.2 | Plus |
3R | 32079331 | 3R | 11679869..11680027 | 15..173 | 795 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 02:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 3069..3122 | 168..222 | 110 | 69.1 | Plus |
BO04251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:57:57 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:40 Download gff for
BO04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14716-PA | 1..891 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:54 Download gff for
BO04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 123..1020 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:00:31 Download gff for
BO04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 123..1020 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:00:31 Download gff for
BO04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11679865..11680027 | 10..173 | 98 | -> | Plus |
3R | 11680084..11680589 | 174..679 | 100 | -> | Plus |
3R | 11680645..11680873 | 680..909 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:54 Download gff for
BO04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7505587..7505749 | 10..173 | 98 | -> | Plus |
arm_3R | 7505806..7506311 | 174..679 | 100 | -> | Plus |
arm_3R | 7506367..7506595 | 680..909 | 97 | | Plus |
BO04251.complete Sequence
922 bp (922 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629693
> BO04251.complete
GAAGTTATCAGTCGACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTC
AGGTCTCCGAGAATGTGGAGGATGTGGAATTCGTAGACATGGCGTTCACA
AAGGAGTTGCGTAAAGCCACAAAAGATGTGCATAATCTTACTGATGTTCT
AGTGAATGCAAAGATCGCACTTGCCCTTTCTGATGACGAGGTCTGGTATG
ATGGACTCCTGGCCTTCTACGAACTGTACAAATTCTTTGAGACCCATCTG
CCGGAGCGCCTGCTGCCCAAAGAATTCCACAGAACAGCGGCATTTGAAAG
GGATTTTGCCTATTTCTACGGTTCCGATTGGAGGAAGGACTACGAAATTC
GCCCGGCGGTCCAGAAATATCTCGAGCATCTGGAAAAGATTGCCGCACAG
AACGAACTCTTGCTGTTCGCCTACTCCTATCAGATGTACATGGCTTTGAT
GTCCGGCGGACAAATGTTGCAGAAGAAGCGTATGATCGCTCGTAAAATGT
GGATCTTTTCAAAGAACGATGACGAGGAGCAGCAGAAGCAGGCCGACAAG
GAGGCAGAGTTGGCCACCGCCAGAGCTGCCGATGGCTCTGTAGACAAAGA
CGACTTGGAGGCCAGGCCAATGCCTGCCCAGGTTACCATTTGCCCGCCGG
GATGTGAGGCCACATATTTTCCTGAGAAGATCTCTGTCTTAAAGGCCAAA
CTAAGGCGCGTTTTCAACAATCACTACGGAGCTTTTGACGATGATTTGCG
TGCTGCTTTTATTGAGGAAAGTCGCAACGTATTTCGCTTAAATATAGAAG
TAGTACGGACCATCAAAGGCGTGAATCGTGCCAATCTTAGGAAGCTGGCC
CTCGCACTAATCTTTGTTTCAAGTATTGTAGTGGCCGTGAAATTTGCTCT
CAAGGCAAGCTTTCTAGACCAT
BO04251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ho-RA | 891 | CG14716-PA | 1..888 | 17..904 | 4425 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ho-RA | 1123 | CG14716-RA | 127..1016 | 15..904 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11680083..11680589 | 173..679 | 2535 | 100 | Plus |
3R | 32079331 | 3R | 11680643..11680869 | 678..904 | 1120 | 99.6 | Plus |
3R | 32079331 | 3R | 11679869..11680027 | 15..173 | 795 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 3069..3122 | 168..222 | 110 | 69.1 | Plus |
BO04251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:11 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 1..891 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:28 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 107..1004 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:18 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 129..1016 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:11 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 107..1004 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:31 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ho-RA | 129..1016 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:31 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11679871..11680027 | 17..173 | 100 | -> | Plus |
3R | 11680084..11680589 | 174..679 | 100 | -> | Plus |
3R | 11680645..11680869 | 680..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:18 Download gff for
BO04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7505593..7505749 | 17..173 | 100 | -> | Plus |
arm_3R | 7505806..7506311 | 174..679 | 100 | -> | Plus |
arm_3R | 7506367..7506591 | 680..906 | 98 | | Plus |
BO04251.pep Sequence
Translation from 16 to 922
> BO04251.pep
MSASEETIADSQVSENVEDVEFVDMAFTKELRKATKDVHNLTDVLVNAKI
ALALSDDEVWYDGLLAFYELYKFFETHLPERLLPKEFHRTAAFERDFAYF
YGSDWRKDYEIRPAVQKYLEHLEKIAAQNELLLFAYSYQMYMALMSGGQM
LQKKRMIARKMWIFSKNDDEEQQKQADKEAELATARAADGSVDKDDLEAR
PMPAQVTICPPGCEATYFPEKISVLKAKLRRVFNNHYGAFDDDLRAAFIE
ESRNVFRLNIEVVRTIKGVNRANLRKLALALIFVSSIVVAVKFALKASFL
DH
BO04251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ho-PA | 296 | CG14716-PA | 1..296 | 1..296 | 1507 | 100 | Plus |