Clone BO04251 Report

Search the DGRC for BO04251

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptHo-RA
Protein status:BO04251.pep: validated full length
Sequenced Size:922

Clone Sequence Records

BO04251.3prime Sequence

920 bp (824 high quality bases) assembled on 2005-12-01

> BO04251.3prime
ATGGTCTAGAAAGCTTGCCTTGAGAGCAAATTTCACGGCCACTACAATAC
TTGAAACAAAGATTAGTGCGAGGGCCAGCTTCCTAAGATTGGCACGATTC
ACGCCTTTGATGGTCCGTACTACTTCTATATTTAAGCGAAATACGTTGCG
ACTTTCCTCAATAAAAGCAGCACGCAAATCATCGTCAAAAGCTCCGTAGT
GATTGTTGAAAACGCGCCTTAGTTTGGCCTTTAAGACAGAGATCTTCTCA
GGAAAATATGTGGCCTCACATCCCGGCGGGCAAATGGTAACCTGGGCAGG
CATTGGCCTGGCCTCCAAGTCGTCTTTGTCTACAGAGCCATCGGCAGCTC
TGGCGGTGGCCAACTCTGCCTCCTTGTCGGCCTGCTTCTGCTGCTCCTCG
TCATCGTTCTTTGAAAAGATCCACATTTTACGAGCGATCATACGCTTCTT
CTGCAACATTTGTCCGCCGGACATCAAAGCCATGTACATCTGATAGGAGT
AGGCGAACAGCAAGAGTTCGTTCTGTGCGGCAATCTTTTCCAGATGCTCG
AGATATTTCTGGACCGCCGGGCGAATTTCGTAGTCCTTCCTCCAATCGGA
ACCGTAGAAATAGGCAAAATCCCTTTCAAATGCCGCTGTTCTGTGGAATT
CTTTGGGCAGCAGGCGCTCCGGCAGATGGGTCTCAAAGAATTTGTACAGT
TCGTAGAAGGCCAGGAGTCCATCATACCAGACCTCGTCATCAGAAAGGGC
AAGTGCGATCTTTGCATTCACTAGAACATCAGTAAGATTATGCACATCTT
TTGTGGCTTTACGCAACTCCTTTGTGAACGCCATGTCTACGATTTCCACA
TCCTCCACATTCTCGGAGACCTGACTGTCCGCTATTGTTTCTTCGCTCGC
TGACATGTCGACTGATAACT

BO04251.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14716-PA 891 Ho-RA 1..888 906..19 4390 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ho-RA 1123 CG14716-RA 127..1016 908..19 4420 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11680083..11680589 750..244 2535 100 Minus
3R 32079331 3R 11680643..11680869 245..19 1120 99.6 Minus
3R 32079331 3R 11679869..11680027 908..750 780 99.4 Minus
Blast to na_te.dros performed 2015-02-11 23:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 3069..3122 755..701 110 69.1 Minus

BO04251.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:57:56 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:38 Download gff for BO04251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14716-PA 1..891 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:29 Download gff for BO04251.3prime
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 123..1020 14..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:08 Download gff for BO04251.3prime
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 123..1020 14..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:08 Download gff for BO04251.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11679865..11680027 750..913 97 -> Minus
3R 11680084..11680589 244..749 100 -> Minus
3R 11680645..11680873 14..243 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:29 Download gff for BO04251.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7505587..7505749 750..913 97 -> Minus
arm_3R 7505806..7506311 244..749 100 -> Minus
arm_3R 7506367..7506595 14..243 98   Minus

BO04251.5prime Sequence

921 bp (772 high quality bases) assembled on 2005-11-29

> BO04251.5prime
GAAGTTATCAGTCGACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTC
AGGTCTCCGAGAATGTGGAGGATGTGGAATTCGTAGACATGGCGTTCACA
AAGGAGTTGCGTAAAGCCACAAAAGATGTGCATAATCTTACTGATGTTCT
AGTGAATGCAAAGATCGCACTTGCCCTTTCTGATGACGAGGTCTGGTATG
ATGGACTCCTGGCCTTCTACGAACTGTACAAATTCTTTGAGACCCATCTG
CCGGAGCGCCTGCTGCCCAAAGAATTCCACAGAACAGCGGCATTTGAAAG
GGATTTTGCCTATTTCTACGGTTCCGATTGGAGGAAGGACTACGAAATTC
GCCCGGCGGTCCAGAAATATCTCGAGCATCTGGAAAAGATTGCCGCACAG
AACGAACTCTTGCTGTTCGCCTACTCCTATCAGATGTACATGGCTTTGAT
GTCCGGCGGACAAATGTTGCAGAAGAAGCGTATGATCGCTCGTAAAATGT
GGATCTTTTCAAAGAACGATGACGAGGAGCAGCAGAAGCAGGCCGACAAG
GAGGCAGAGTTGGCCACCGCCAGAGCTGCCGATGGCTCTGTAGACAAAGA
CGACTTGGAGGCCAGGCCAATGCCTGCCCAGGTTACCATTTGCCCGCCGG
GATGTGAGGCCACATATTTTCCTGAGAAGATCTCTGTCTTAAAGGCCAAA
CTAAGGCGCGTTTTCAACAATCACTACGGAGCTTTTGACGATGATTTGCG
TGCTGCTTTTATTGAGGAAAGTCGCAACGTATTTCGCTTAAATATAGAAG
TAGTACGGACCATCAAAGGCGTGAATCGTGGCAATCTTAGGAAGCTGGCC
CTCGCACTAATCTTTGTTTTCAGTATTGTAGTGGCCGTGAAATTTGCTCT
CAAGGCAAGCTTTTCTAGACC

BO04251.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14716-PA 891 Ho-RA 1..888 17..904 4340 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ho-RA 1123 CG14716-RA 127..1016 15..904 4390 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11680083..11680589 173..679 2535 100 Plus
3R 32079331 3R 11680643..11680869 678..904 1075 98.2 Plus
3R 32079331 3R 11679869..11680027 15..173 795 100 Plus
Blast to na_te.dros performed 2015-02-11 02:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 3069..3122 168..222 110 69.1 Plus

BO04251.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:57:57 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:40 Download gff for BO04251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14716-PA 1..891 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:54 Download gff for BO04251.5prime
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 123..1020 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:00:31 Download gff for BO04251.5prime
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 123..1020 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:00:31 Download gff for BO04251.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11679865..11680027 10..173 98 -> Plus
3R 11680084..11680589 174..679 100 -> Plus
3R 11680645..11680873 680..909 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:54 Download gff for BO04251.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7505587..7505749 10..173 98 -> Plus
arm_3R 7505806..7506311 174..679 100 -> Plus
arm_3R 7506367..7506595 680..909 97   Plus

BO04251.complete Sequence

922 bp (922 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629693

> BO04251.complete
GAAGTTATCAGTCGACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTC
AGGTCTCCGAGAATGTGGAGGATGTGGAATTCGTAGACATGGCGTTCACA
AAGGAGTTGCGTAAAGCCACAAAAGATGTGCATAATCTTACTGATGTTCT
AGTGAATGCAAAGATCGCACTTGCCCTTTCTGATGACGAGGTCTGGTATG
ATGGACTCCTGGCCTTCTACGAACTGTACAAATTCTTTGAGACCCATCTG
CCGGAGCGCCTGCTGCCCAAAGAATTCCACAGAACAGCGGCATTTGAAAG
GGATTTTGCCTATTTCTACGGTTCCGATTGGAGGAAGGACTACGAAATTC
GCCCGGCGGTCCAGAAATATCTCGAGCATCTGGAAAAGATTGCCGCACAG
AACGAACTCTTGCTGTTCGCCTACTCCTATCAGATGTACATGGCTTTGAT
GTCCGGCGGACAAATGTTGCAGAAGAAGCGTATGATCGCTCGTAAAATGT
GGATCTTTTCAAAGAACGATGACGAGGAGCAGCAGAAGCAGGCCGACAAG
GAGGCAGAGTTGGCCACCGCCAGAGCTGCCGATGGCTCTGTAGACAAAGA
CGACTTGGAGGCCAGGCCAATGCCTGCCCAGGTTACCATTTGCCCGCCGG
GATGTGAGGCCACATATTTTCCTGAGAAGATCTCTGTCTTAAAGGCCAAA
CTAAGGCGCGTTTTCAACAATCACTACGGAGCTTTTGACGATGATTTGCG
TGCTGCTTTTATTGAGGAAAGTCGCAACGTATTTCGCTTAAATATAGAAG
TAGTACGGACCATCAAAGGCGTGAATCGTGCCAATCTTAGGAAGCTGGCC
CTCGCACTAATCTTTGTTTCAAGTATTGTAGTGGCCGTGAAATTTGCTCT
CAAGGCAAGCTTTCTAGACCAT

BO04251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ho-RA 891 CG14716-PA 1..888 17..904 4425 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ho-RA 1123 CG14716-RA 127..1016 15..904 4435 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11680083..11680589 173..679 2535 100 Plus
3R 32079331 3R 11680643..11680869 678..904 1120 99.6 Plus
3R 32079331 3R 11679869..11680027 15..173 795 100 Plus
Blast to na_te.dros performed 2014-11-28 00:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 3069..3122 168..222 110 69.1 Plus

BO04251.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:11 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 1..891 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:28 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 107..1004 10..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:18 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 129..1016 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:11 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 107..1004 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:31 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
Ho-RA 129..1016 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:31 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11679871..11680027 17..173 100 -> Plus
3R 11680084..11680589 174..679 100 -> Plus
3R 11680645..11680869 680..906 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:18 Download gff for BO04251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7505593..7505749 17..173 100 -> Plus
arm_3R 7505806..7506311 174..679 100 -> Plus
arm_3R 7506367..7506591 680..906 98   Plus

BO04251.pep Sequence

Translation from 16 to 922

> BO04251.pep
MSASEETIADSQVSENVEDVEFVDMAFTKELRKATKDVHNLTDVLVNAKI
ALALSDDEVWYDGLLAFYELYKFFETHLPERLLPKEFHRTAAFERDFAYF
YGSDWRKDYEIRPAVQKYLEHLEKIAAQNELLLFAYSYQMYMALMSGGQM
LQKKRMIARKMWIFSKNDDEEQQKQADKEAELATARAADGSVDKDDLEAR
PMPAQVTICPPGCEATYFPEKISVLKAKLRRVFNNHYGAFDDDLRAAFIE
ESRNVFRLNIEVVRTIKGVNRANLRKLALALIFVSSIVVAVKFALKASFL
DH

BO04251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ho-PA 296 CG14716-PA 1..296 1..296 1507 100 Plus