Clone Sequence Records
BO04252.3prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-01
> BO04252.3prime
ATGGTCTAGAAAGCTTGCGCATATTTCTGTGGAGTTTTTGCTTAAATCAC
AATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCCA
TTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAAT
AATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGGA
CCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATCT
GTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAGG
TTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGTA
TATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGTC
CACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTTG
AAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATTA
CTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAAA
TAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACTG
ATCCCCAATGCGGTAAACGATTTGATCACAAAGTACATAATCCCCTGCTA
TCGAGTTACTATCACGGACTAAAAACACTCCCCGCTCGCGTTCGTTCATC
AAAACTTCAGTAGCATCCTGTCTAGACATGGGACCAAAGTACCAGCTGTT
CCTATCAGAAACGTCAAATGTATCCATGTCGACTGATAACT
BO04252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PB | 762 | Crk-RB | 1..759 | 777..19 | 3795 | 100 | Minus |
CG1587-PC | 816 | Crk-RC | 205..813 | 627..19 | 3045 | 100 | Minus |
CG1587-PA | 816 | Crk-RA | 205..813 | 627..19 | 3045 | 100 | Minus |
CG1587-PC | 816 | Crk-RC | 1..151 | 777..627 | 755 | 100 | Minus |
CG1587-PA | 816 | Crk-RA | 1..151 | 777..627 | 755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RB | 1143 | CG1587-RB | 232..990 | 777..19 | 3795 | 100 | Minus |
Crk-RE | 1173 | CG1587-RE | 412..1020 | 627..19 | 3045 | 100 | Minus |
Crk-RA | 1197 | CG1587-RA | 436..1044 | 627..19 | 3045 | 100 | Minus |
Crk-RE | 1173 | CG1587-RE | 262..358 | 723..627 | 485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213012 | 240..19 | 1110 | 100 | Minus |
4 | 1348131 | 4 | 211639..211795 | 627..471 | 785 | 100 | Minus |
4 | 1348131 | 4 | 211854..211982 | 471..343 | 645 | 100 | Minus |
4 | 1348131 | 4 | 210556..210676 | 747..627 | 605 | 100 | Minus |
4 | 1348131 | 4 | 212625..212729 | 345..241 | 525 | 100 | Minus |
4 | 1348131 | 4 | 216168..216226 | 471..413 | 280 | 98.3 | Minus |
4 | 1348131 | 4 | 216051..216111 | 533..473 | 275 | 96.7 | Minus |
4 | 1348131 | 4 | 216008..216052 | 627..583 | 195 | 95.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:03:19 has no hits.
BO04252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:57 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-PB | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:41 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PB | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:20 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 229..993 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:25 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 229..993 | 15..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:25 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210452..210486 | 746..780 | 97 | -> | Minus |
4 | 210558..210675 | 628..745 | 100 | -> | Minus |
4 | 211639..211794 | 472..627 | 100 | -> | Minus |
4 | 211854..211982 | 343..471 | 100 | -> | Minus |
4 | 212628..212729 | 241..342 | 100 | -> | Minus |
4 | 212791..213015 | 15..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:20 Download gff for
BO04252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231078..231112 | 746..780 | 97 | -> | Minus |
arm_4 | 231184..231301 | 628..745 | 100 | -> | Minus |
arm_4 | 232265..232420 | 472..627 | 100 | -> | Minus |
arm_4 | 232480..232608 | 343..471 | 100 | -> | Minus |
arm_4 | 233254..233355 | 241..342 | 100 | -> | Minus |
arm_4 | 233417..233641 | 15..240 | 99 | | Minus |
BO04252.5prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-01
> BO04252.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGATCAAATCGTTTACCGCATTGGGGATCAGTCTT
TTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTTGGAT
ACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAATAGG
AAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAAAGAG
GTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGACTGCG
CGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATACAACA
GTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCTTCCA
TTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGATTTA
AATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCCCTAA
CGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATTAAAG
TCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGGAAAA
AATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTGATTT
AAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACC
BO04252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PB | 762 | Crk-RB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG1587-PC | 816 | Crk-RC | 205..813 | 167..775 | 3045 | 100 | Plus |
CG1587-PA | 816 | Crk-RA | 205..813 | 167..775 | 3045 | 100 | Plus |
CG1587-PC | 816 | Crk-RC | 1..151 | 17..167 | 755 | 100 | Plus |
CG1587-PA | 816 | Crk-RA | 1..151 | 17..167 | 755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RB | 1143 | CG1587-RB | 232..990 | 17..775 | 3795 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 412..1020 | 167..775 | 3045 | 100 | Plus |
Crk-RA | 1197 | CG1587-RA | 436..1044 | 167..775 | 3045 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..358 | 71..167 | 485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213012 | 554..775 | 1110 | 100 | Plus |
4 | 1348131 | 4 | 211639..211795 | 167..323 | 785 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 323..451 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210676 | 47..167 | 605 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 449..553 | 525 | 100 | Plus |
4 | 1348131 | 4 | 216168..216226 | 323..381 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 261..321 | 275 | 96.7 | Plus |
4 | 1348131 | 4 | 216008..216052 | 167..211 | 195 | 95.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:56:26 has no hits.
BO04252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:58 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-PB | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:42 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PB | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:12 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 229..993 | 14..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:23 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 229..993 | 14..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:23 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 212791..213015 | 554..779 | 99 | | Plus |
4 | 211639..211794 | 167..322 | 100 | -> | Plus |
4 | 211854..211982 | 323..451 | 100 | -> | Plus |
4 | 212628..212729 | 452..553 | 100 | -> | Plus |
4 | 210452..210486 | 14..48 | 97 | -> | Plus |
4 | 210558..210675 | 49..166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:12 Download gff for
BO04252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231078..231112 | 14..48 | 97 | -> | Plus |
arm_4 | 231184..231301 | 49..166 | 100 | -> | Plus |
arm_4 | 232265..232420 | 167..322 | 100 | -> | Plus |
arm_4 | 232480..232608 | 323..451 | 100 | -> | Plus |
arm_4 | 233254..233355 | 452..553 | 100 | -> | Plus |
arm_4 | 233417..233641 | 554..779 | 99 | | Plus |
BO04252.complete Sequence
793 bp (793 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629694
> BO04252.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGATCAAATCGTTTACCGCATTGGGGATCAGTCTT
TTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTTGGAT
ACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAATAGG
AAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAAAGAG
GTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGACTGCG
CGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATACAACA
GTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCTTCCA
TTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGATTTA
AATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCCCTAA
CGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATTAAAG
TCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGGAAAA
AATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTGATTT
AAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACCAT
BO04252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RB | 762 | CG1587-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
Crk-RE | 792 | CG1587-PE | 181..789 | 167..775 | 3045 | 100 | Plus |
Crk-RA | 816 | CG1587-PA | 205..813 | 167..775 | 3045 | 100 | Plus |
Crk-RE | 792 | CG1587-PE | 31..127 | 71..167 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RB | 1143 | CG1587-RB | 232..990 | 17..775 | 3795 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 412..1020 | 167..775 | 3045 | 100 | Plus |
Crk-RA | 1197 | CG1587-RA | 436..1044 | 167..775 | 3045 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..358 | 71..167 | 485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213012 | 554..775 | 1110 | 100 | Plus |
4 | 1348131 | 4 | 211639..211795 | 167..323 | 785 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 323..451 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210676 | 47..167 | 605 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 449..553 | 525 | 100 | Plus |
4 | 1348131 | 4 | 216168..216226 | 323..381 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 261..321 | 275 | 96.7 | Plus |
4 | 1348131 | 4 | 216008..216052 | 167..211 | 195 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:38 has no hits.
BO04252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:08 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:50 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 111..875 | 14..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:00 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 232..990 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:08 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 111..875 | 14..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:52 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RB | 232..990 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:52 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210455..210486 | 17..48 | 100 | -> | Plus |
4 | 210558..210675 | 49..166 | 100 | -> | Plus |
4 | 211639..211794 | 167..322 | 100 | -> | Plus |
4 | 211854..211982 | 323..451 | 100 | -> | Plus |
4 | 212628..212729 | 452..553 | 100 | -> | Plus |
4 | 212791..213012 | 554..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:00 Download gff for
BO04252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231081..231112 | 17..48 | 100 | -> | Plus |
arm_4 | 231184..231301 | 49..166 | 100 | -> | Plus |
arm_4 | 232265..232420 | 167..322 | 100 | -> | Plus |
arm_4 | 232480..232608 | 323..451 | 100 | -> | Plus |
arm_4 | 233254..233355 | 452..553 | 100 | -> | Plus |
arm_4 | 233417..233638 | 554..777 | 99 | | Plus |
BO04252.pep Sequence
Translation from 16 to 793
> BO04252.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
DQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFV
GSDQDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYM
DEDAIDKNEPSISGSSNVFESTLKRTDLNRKLPAYARVKQSRVPNAYDKT
ALKLEIGDIIKVTKTNINGQWEGELNGKNGHFPFTHVEFVDDCDLSKNST
EICASFLDH
BO04252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-PB | 253 | CG1587-PB | 1..253 | 1..253 | 1347 | 100 | Plus |
Crk-PA | 271 | CG1587-PA | 1..271 | 1..253 | 1318 | 93.4 | Plus |
Crk-PC | 271 | CG1587-PC | 1..271 | 1..253 | 1318 | 93.4 | Plus |
Crk-PE | 263 | CG1587-PE | 1..263 | 1..253 | 1249 | 90.4 | Plus |
Crk-PD | 184 | CG1587-PD | 1..168 | 1..150 | 746 | 86.3 | Plus |