Clone BO04252 Report

Search the DGRC for BO04252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCrk-RB
Protein status:BO04252.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO04252.3prime Sequence

791 bp (790 high quality bases) assembled on 2005-12-01

> BO04252.3prime
ATGGTCTAGAAAGCTTGCGCATATTTCTGTGGAGTTTTTGCTTAAATCAC
AATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCCA
TTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAAT
AATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGGA
CCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATCT
GTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAGG
TTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGTA
TATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGTC
CACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTTG
AAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATTA
CTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAAA
TAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACTG
ATCCCCAATGCGGTAAACGATTTGATCACAAAGTACATAATCCCCTGCTA
TCGAGTTACTATCACGGACTAAAAACACTCCCCGCTCGCGTTCGTTCATC
AAAACTTCAGTAGCATCCTGTCTAGACATGGGACCAAAGTACCAGCTGTT
CCTATCAGAAACGTCAAATGTATCCATGTCGACTGATAACT

BO04252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PB 762 Crk-RB 1..759 777..19 3795 100 Minus
CG1587-PC 816 Crk-RC 205..813 627..19 3045 100 Minus
CG1587-PA 816 Crk-RA 205..813 627..19 3045 100 Minus
CG1587-PC 816 Crk-RC 1..151 777..627 755 100 Minus
CG1587-PA 816 Crk-RA 1..151 777..627 755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RB 1143 CG1587-RB 232..990 777..19 3795 100 Minus
Crk-RE 1173 CG1587-RE 412..1020 627..19 3045 100 Minus
Crk-RA 1197 CG1587-RA 436..1044 627..19 3045 100 Minus
Crk-RE 1173 CG1587-RE 262..358 723..627 485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213012 240..19 1110 100 Minus
4 1348131 4 211639..211795 627..471 785 100 Minus
4 1348131 4 211854..211982 471..343 645 100 Minus
4 1348131 4 210556..210676 747..627 605 100 Minus
4 1348131 4 212625..212729 345..241 525 100 Minus
4 1348131 4 216168..216226 471..413 280 98.3 Minus
4 1348131 4 216051..216111 533..473 275 96.7 Minus
4 1348131 4 216008..216052 627..583 195 95.6 Minus
Blast to na_te.dros performed on 2015-02-12 01:03:19 has no hits.

BO04252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:57 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-PB 1..762 15..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:41 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PB 1..762 15..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:20 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 229..993 15..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:25 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 229..993 15..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:25 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
4 210452..210486 746..780 97 -> Minus
4 210558..210675 628..745 100 -> Minus
4 211639..211794 472..627 100 -> Minus
4 211854..211982 343..471 100 -> Minus
4 212628..212729 241..342 100 -> Minus
4 212791..213015 15..240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:20 Download gff for BO04252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 231078..231112 746..780 97 -> Minus
arm_4 231184..231301 628..745 100 -> Minus
arm_4 232265..232420 472..627 100 -> Minus
arm_4 232480..232608 343..471 100 -> Minus
arm_4 233254..233355 241..342 100 -> Minus
arm_4 233417..233641 15..240 99   Minus

BO04252.5prime Sequence

791 bp (790 high quality bases) assembled on 2005-12-01

> BO04252.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGATCAAATCGTTTACCGCATTGGGGATCAGTCTT
TTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTTGGAT
ACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAATAGG
AAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAAAGAG
GTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGACTGCG
CGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATACAACA
GTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCTTCCA
TTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGATTTA
AATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCCCTAA
CGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATTAAAG
TCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGGAAAA
AATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTGATTT
AAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACC

BO04252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PB 762 Crk-RB 1..759 17..775 3795 100 Plus
CG1587-PC 816 Crk-RC 205..813 167..775 3045 100 Plus
CG1587-PA 816 Crk-RA 205..813 167..775 3045 100 Plus
CG1587-PC 816 Crk-RC 1..151 17..167 755 100 Plus
CG1587-PA 816 Crk-RA 1..151 17..167 755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RB 1143 CG1587-RB 232..990 17..775 3795 100 Plus
Crk-RE 1173 CG1587-RE 412..1020 167..775 3045 100 Plus
Crk-RA 1197 CG1587-RA 436..1044 167..775 3045 100 Plus
Crk-RE 1173 CG1587-RE 262..358 71..167 485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213012 554..775 1110 100 Plus
4 1348131 4 211639..211795 167..323 785 100 Plus
4 1348131 4 211854..211982 323..451 645 100 Plus
4 1348131 4 210556..210676 47..167 605 100 Plus
4 1348131 4 212625..212729 449..553 525 100 Plus
4 1348131 4 216168..216226 323..381 280 98.3 Plus
4 1348131 4 216051..216111 261..321 275 96.7 Plus
4 1348131 4 216008..216052 167..211 195 95.6 Plus
Blast to na_te.dros performed on 2015-02-12 10:56:26 has no hits.

BO04252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:58 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-PB 1..762 17..779 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:42 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PB 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:12 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 229..993 14..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:23 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 229..993 14..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:23 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
4 212791..213015 554..779 99   Plus
4 211639..211794 167..322 100 -> Plus
4 211854..211982 323..451 100 -> Plus
4 212628..212729 452..553 100 -> Plus
4 210452..210486 14..48 97 -> Plus
4 210558..210675 49..166 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:12 Download gff for BO04252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 231078..231112 14..48 97 -> Plus
arm_4 231184..231301 49..166 100 -> Plus
arm_4 232265..232420 167..322 100 -> Plus
arm_4 232480..232608 323..451 100 -> Plus
arm_4 233254..233355 452..553 100 -> Plus
arm_4 233417..233641 554..779 99   Plus

BO04252.complete Sequence

793 bp (793 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629694

> BO04252.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGATCAAATCGTTTACCGCATTGGGGATCAGTCTT
TTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTTGGAT
ACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAATAGG
AAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAAAGAG
GTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGACTGCG
CGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATACAACA
GTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCTTCCA
TTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGATTTA
AATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCCCTAA
CGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATTAAAG
TCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGGAAAA
AATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTGATTT
AAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACCAT

BO04252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RB 762 CG1587-PB 1..759 17..775 3795 100 Plus
Crk-RE 792 CG1587-PE 181..789 167..775 3045 100 Plus
Crk-RA 816 CG1587-PA 205..813 167..775 3045 100 Plus
Crk-RE 792 CG1587-PE 31..127 71..167 485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RB 1143 CG1587-RB 232..990 17..775 3795 100 Plus
Crk-RE 1173 CG1587-RE 412..1020 167..775 3045 100 Plus
Crk-RA 1197 CG1587-RA 436..1044 167..775 3045 100 Plus
Crk-RE 1173 CG1587-RE 262..358 71..167 485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213012 554..775 1110 100 Plus
4 1348131 4 211639..211795 167..323 785 100 Plus
4 1348131 4 211854..211982 323..451 645 100 Plus
4 1348131 4 210556..210676 47..167 605 100 Plus
4 1348131 4 212625..212729 449..553 525 100 Plus
4 1348131 4 216168..216226 323..381 280 98.3 Plus
4 1348131 4 216051..216111 261..321 275 96.7 Plus
4 1348131 4 216008..216052 167..211 195 95.6 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:38 has no hits.

BO04252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:08 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:50 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 111..875 14..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:00 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 232..990 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:08 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 111..875 14..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:52 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RB 232..990 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:52 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
4 210455..210486 17..48 100 -> Plus
4 210558..210675 49..166 100 -> Plus
4 211639..211794 167..322 100 -> Plus
4 211854..211982 323..451 100 -> Plus
4 212628..212729 452..553 100 -> Plus
4 212791..213012 554..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:00 Download gff for BO04252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 231081..231112 17..48 100 -> Plus
arm_4 231184..231301 49..166 100 -> Plus
arm_4 232265..232420 167..322 100 -> Plus
arm_4 232480..232608 323..451 100 -> Plus
arm_4 233254..233355 452..553 100 -> Plus
arm_4 233417..233638 554..777 99   Plus

BO04252.pep Sequence

Translation from 16 to 793

> BO04252.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
DQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFV
GSDQDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYM
DEDAIDKNEPSISGSSNVFESTLKRTDLNRKLPAYARVKQSRVPNAYDKT
ALKLEIGDIIKVTKTNINGQWEGELNGKNGHFPFTHVEFVDDCDLSKNST
EICASFLDH

BO04252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-PB 253 CG1587-PB 1..253 1..253 1347 100 Plus
Crk-PA 271 CG1587-PA 1..271 1..253 1318 93.4 Plus
Crk-PC 271 CG1587-PC 1..271 1..253 1318 93.4 Plus
Crk-PE 263 CG1587-PE 1..263 1..253 1249 90.4 Plus
Crk-PD 184 CG1587-PD 1..168 1..150 746 86.3 Plus