Clone Sequence Records
BO04253.3prime Sequence
466 bp (398 high quality bases) assembled on 2005-12-01
> BO04253.3prime
ATGGTCTAGAAAGCTTGCAATGCGACGCTTGAGGCCCGCCGTGTAATCGA
ATAACTCGCCATTCCGAAACTCGCCACGCATATCCAGGACGTAATACAGT
GTCTTGCCCTTCACCTTAATGGGTAGCTGCACCCTGGCCATGTTCCGTGA
TTCCTCGGCGGAGACGCACTTTAATGGCACGGTCATAATGCGATTCCGGT
TGAAGGGACCGTAGGTCACAAAGGAAACGCTCTGACCACCCTTTCTCAAG
ATAAGAAAACGCACCGATCGCAGGGTAAACATCCAGACAGCAAACAGTAT
GCCATATCCTATCAGAAAGCTACAGGCTGTAATGCCATTTCTGTACTTAT
TATCGCCCAGATTTATGCGCTGGAACCACTTCAGCTCCTCTCCGGGTTTT
TCCCCACTGGAGCATCCTTAAGCGTCGTGAAGGCGAAGTGCGAGAGATAT
GTCCAGAAAACAAACT
BO04253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-PA | 696 | CG12935-RA | 309..693 | 403..19 | 1925 | 100 | Minus |
CG12935-PA | 696 | CG12935-RA | 245..307 | 466..404 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-RB | 918 | CG12935-RB | 355..803 | 466..19 | 2220 | 99.8 | Minus |
CG12935-RA | 1200 | CG12935-RA | 637..1085 | 466..19 | 2220 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10810248..10810540 | 311..19 | 1465 | 100 | Minus |
2R | 25286936 | 2R | 10810033..10810192 | 466..308 | 750 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:24 has no hits.
BO04253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:59 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-PA | 245..696 | 15..466 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:44 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-PA | 245..696 | 15..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:43 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 637..1090 | 14..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:33 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 637..1090 | 14..466 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:33 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10810033..10810191 | 309..466 | 99 | -> | Minus |
2R | 10810251..10810545 | 14..308 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:43 Download gff for
BO04253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6697538..6697696 | 309..466 | 99 | -> | Minus |
arm_2R | 6697756..6698050 | 14..308 | 99 | | Minus |
BO04253.5prime Sequence
452 bp (377 high quality bases) assembled on 2005-12-01
> BO04253.5prime
GAAGTTATCAGTCGACATGAGCAATCTGCTGAATTTTGCCCTGCGGCAGG
GCGTCAACTCCATCAAGCGCCTTAGCCTCCAGAGTTTCAGACTGGCAGCT
CCGGCCATTGTAACAAAAACGCCGGTTACTTCCACGATAAAGAGATTCTC
CTCCCAAGCCGCCCCCTTCGATGTGAACACCAGTGTCCCCAAGGACATAA
TACTTTTCAAGTATGAAAACCCCCGATTCTACCAGATGCTTAACTTTTTC
GGGGTGTGTCAGTTTGTTTTCTGGACATATCTCTCGCACTTCGCCTTCAC
GACGCTTAAGGATGCTCCAGTGGTGGAAAAACCCGGAGAGGAGCTGAAGT
GGTTCCAGCGCATAAATCTGGGCGATAATAAGTACAGAAATGGCATTACA
GCCTGTAGCTTTCTGATAGGATATGGCATACTGTTTGCTGTCTGGATGTT
TA
BO04253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-PA | 696 | CG12935-RA | 1..436 | 17..452 | 2180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-RB | 918 | CG12935-RB | 111..546 | 17..452 | 2180 | 100 | Plus |
CG12935-RA | 1200 | CG12935-RA | 393..828 | 17..452 | 2180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10809789..10810192 | 17..420 | 2020 | 100 | Plus |
2R | 25286936 | 2R | 10810248..10810283 | 417..452 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:30:38 has no hits.
BO04253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:00 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-PA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:46 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-PA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:23 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 384..827 | 8..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:44 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 384..827 | 8..451 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:44 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10809780..10810191 | 8..419 | 99 | -> | Plus |
2R | 10810251..10810282 | 420..451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:23 Download gff for
BO04253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6697285..6697696 | 8..419 | 99 | -> | Plus |
arm_2R | 6697756..6697787 | 420..451 | 100 | | Plus |
BO04253.complete Sequence
727 bp (727 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629695
> BO04253.complete
GAAGTTATCAGTCGACATGAGCAATCTGCTGAATTTTGCCCTGCGGCAGG
GCGTCAACTCCATCAAGCGCCTTAGCCTCCAGAGTTTCAGACTGGCAGCT
CCGGCCATTGTAACAAAAACGCCGGTTACTTCCACGATAAAGAGATTCTC
CTCCCAAGCCGCCCCCTTCGATGTGAACACCAGTGTCCCCAAGGACATAA
TACTTTTCAAGTATGAAAACCCCCGATTCTACCAGATGCTTAACTTTTTC
GGGGTGTGTCAGTTTGTTTTCTGGACATATCTCTCGCACTTCGCCTTCAC
GACGCTTAAGGATGCTCCAGTGGTGGAAAAACCCGGAGAGGAGCTGAAGT
GGTTCCAGCGCATAAATCTGGGCGATAATAAGTACAGAAATGGCATTACA
GCCTGTAGCTTTCTGATAGGATATGGCATACTGTTTGCTGTCTGGATGTT
TACCCTGCGATCGGTGCGTTTTCTTATCTTGAGAAAGGGTGGTCAGAGCG
TTTCCTTTGTGACCTACGGTCCCTTCAACCGGAATCGCATTATGACCGTG
CCATTAAAGTGCGTCTCCGCCGAGGAATCACGGAACATGGCCAGGGTGCA
GCTACCCATTAAGGTGAAGGGCAAGACACTGTATTACGTCCTGGATATGC
GTGGCGAGTTTCGGAATGGCGAGTTATTCGATTACACGGCGGGCCTCAAG
CGTCGCATTGCAAGCTTTCTAGACCAT
BO04253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-RB | 696 | CG12935-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
CG12935-RA | 696 | CG12935-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-RB | 918 | CG12935-RB | 111..803 | 17..709 | 3465 | 100 | Plus |
CG12935-RA | 1200 | CG12935-RA | 393..1085 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10809789..10810192 | 17..420 | 2020 | 100 | Plus |
2R | 25286936 | 2R | 10810248..10810540 | 417..709 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:25 has no hits.
BO04253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:16 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:56 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 388..1094 | 8..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:48 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 393..1085 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:16 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 388..1094 | 8..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:12 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12935-RA | 393..1085 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:12 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10809789..10810191 | 17..419 | 100 | -> | Plus |
2R | 10810251..10810540 | 420..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:48 Download gff for
BO04253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6697294..6697696 | 17..419 | 100 | -> | Plus |
arm_2R | 6697756..6698045 | 420..711 | 99 | | Plus |
BO04253.pep Sequence
Translation from 16 to 727
> BO04253.pep
MSNLLNFALRQGVNSIKRLSLQSFRLAAPAIVTKTPVTSTIKRFSSQAAP
FDVNTSVPKDIILFKYENPRFYQMLNFFGVCQFVFWTYLSHFAFTTLKDA
PVVEKPGEELKWFQRINLGDNKYRNGITACSFLIGYGILFAVWMFTLRSV
RFLILRKGGQSVSFVTYGPFNRNRIMTVPLKCVSAEESRNMARVQLPIKV
KGKTLYYVLDMRGEFRNGELFDYTAGLKRRIASFLDH
BO04253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12935-PB | 231 | CG12935-PB | 1..231 | 1..231 | 1198 | 100 | Plus |
CG12935-PA | 231 | CG12935-PA | 1..231 | 1..231 | 1198 | 100 | Plus |