Clone BO04253 Report

Search the DGRC for BO04253

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG12935-RA
Protein status:BO04253.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO04253.3prime Sequence

466 bp (398 high quality bases) assembled on 2005-12-01

> BO04253.3prime
ATGGTCTAGAAAGCTTGCAATGCGACGCTTGAGGCCCGCCGTGTAATCGA
ATAACTCGCCATTCCGAAACTCGCCACGCATATCCAGGACGTAATACAGT
GTCTTGCCCTTCACCTTAATGGGTAGCTGCACCCTGGCCATGTTCCGTGA
TTCCTCGGCGGAGACGCACTTTAATGGCACGGTCATAATGCGATTCCGGT
TGAAGGGACCGTAGGTCACAAAGGAAACGCTCTGACCACCCTTTCTCAAG
ATAAGAAAACGCACCGATCGCAGGGTAAACATCCAGACAGCAAACAGTAT
GCCATATCCTATCAGAAAGCTACAGGCTGTAATGCCATTTCTGTACTTAT
TATCGCCCAGATTTATGCGCTGGAACCACTTCAGCTCCTCTCCGGGTTTT
TCCCCACTGGAGCATCCTTAAGCGTCGTGAAGGCGAAGTGCGAGAGATAT
GTCCAGAAAACAAACT

BO04253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-PA 696 CG12935-RA 309..693 403..19 1925 100 Minus
CG12935-PA 696 CG12935-RA 245..307 466..404 315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-RB 918 CG12935-RB 355..803 466..19 2220 99.8 Minus
CG12935-RA 1200 CG12935-RA 637..1085 466..19 2220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10810248..10810540 311..19 1465 100 Minus
2R 25286936 2R 10810033..10810192 466..308 750 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 15:30:24 has no hits.

BO04253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:57:59 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-PA 245..696 15..466 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:44 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-PA 245..696 15..466 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:43 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 637..1090 14..466 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:33 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 637..1090 14..466 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:33 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10810033..10810191 309..466 99 -> Minus
2R 10810251..10810545 14..308 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:43 Download gff for BO04253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6697538..6697696 309..466 99 -> Minus
arm_2R 6697756..6698050 14..308 99   Minus

BO04253.5prime Sequence

452 bp (377 high quality bases) assembled on 2005-12-01

> BO04253.5prime
GAAGTTATCAGTCGACATGAGCAATCTGCTGAATTTTGCCCTGCGGCAGG
GCGTCAACTCCATCAAGCGCCTTAGCCTCCAGAGTTTCAGACTGGCAGCT
CCGGCCATTGTAACAAAAACGCCGGTTACTTCCACGATAAAGAGATTCTC
CTCCCAAGCCGCCCCCTTCGATGTGAACACCAGTGTCCCCAAGGACATAA
TACTTTTCAAGTATGAAAACCCCCGATTCTACCAGATGCTTAACTTTTTC
GGGGTGTGTCAGTTTGTTTTCTGGACATATCTCTCGCACTTCGCCTTCAC
GACGCTTAAGGATGCTCCAGTGGTGGAAAAACCCGGAGAGGAGCTGAAGT
GGTTCCAGCGCATAAATCTGGGCGATAATAAGTACAGAAATGGCATTACA
GCCTGTAGCTTTCTGATAGGATATGGCATACTGTTTGCTGTCTGGATGTT
TA

BO04253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-PA 696 CG12935-RA 1..436 17..452 2180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-RB 918 CG12935-RB 111..546 17..452 2180 100 Plus
CG12935-RA 1200 CG12935-RA 393..828 17..452 2180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10809789..10810192 17..420 2020 100 Plus
2R 25286936 2R 10810248..10810283 417..452 180 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:30:38 has no hits.

BO04253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:00 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:46 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:23 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 384..827 8..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:44 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 384..827 8..451 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:44 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10809780..10810191 8..419 99 -> Plus
2R 10810251..10810282 420..451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:23 Download gff for BO04253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6697285..6697696 8..419 99 -> Plus
arm_2R 6697756..6697787 420..451 100   Plus

BO04253.complete Sequence

727 bp (727 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629695

> BO04253.complete
GAAGTTATCAGTCGACATGAGCAATCTGCTGAATTTTGCCCTGCGGCAGG
GCGTCAACTCCATCAAGCGCCTTAGCCTCCAGAGTTTCAGACTGGCAGCT
CCGGCCATTGTAACAAAAACGCCGGTTACTTCCACGATAAAGAGATTCTC
CTCCCAAGCCGCCCCCTTCGATGTGAACACCAGTGTCCCCAAGGACATAA
TACTTTTCAAGTATGAAAACCCCCGATTCTACCAGATGCTTAACTTTTTC
GGGGTGTGTCAGTTTGTTTTCTGGACATATCTCTCGCACTTCGCCTTCAC
GACGCTTAAGGATGCTCCAGTGGTGGAAAAACCCGGAGAGGAGCTGAAGT
GGTTCCAGCGCATAAATCTGGGCGATAATAAGTACAGAAATGGCATTACA
GCCTGTAGCTTTCTGATAGGATATGGCATACTGTTTGCTGTCTGGATGTT
TACCCTGCGATCGGTGCGTTTTCTTATCTTGAGAAAGGGTGGTCAGAGCG
TTTCCTTTGTGACCTACGGTCCCTTCAACCGGAATCGCATTATGACCGTG
CCATTAAAGTGCGTCTCCGCCGAGGAATCACGGAACATGGCCAGGGTGCA
GCTACCCATTAAGGTGAAGGGCAAGACACTGTATTACGTCCTGGATATGC
GTGGCGAGTTTCGGAATGGCGAGTTATTCGATTACACGGCGGGCCTCAAG
CGTCGCATTGCAAGCTTTCTAGACCAT

BO04253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-RB 696 CG12935-PB 1..693 17..709 3465 100 Plus
CG12935-RA 696 CG12935-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-RB 918 CG12935-RB 111..803 17..709 3465 100 Plus
CG12935-RA 1200 CG12935-RA 393..1085 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10809789..10810192 17..420 2020 100 Plus
2R 25286936 2R 10810248..10810540 417..709 1465 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:25 has no hits.

BO04253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:16 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:56 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 388..1094 8..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:48 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 393..1085 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:16 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 388..1094 8..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:12 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 393..1085 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:12 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10809789..10810191 17..419 100 -> Plus
2R 10810251..10810540 420..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:48 Download gff for BO04253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6697294..6697696 17..419 100 -> Plus
arm_2R 6697756..6698045 420..711 99   Plus

BO04253.pep Sequence

Translation from 16 to 727

> BO04253.pep
MSNLLNFALRQGVNSIKRLSLQSFRLAAPAIVTKTPVTSTIKRFSSQAAP
FDVNTSVPKDIILFKYENPRFYQMLNFFGVCQFVFWTYLSHFAFTTLKDA
PVVEKPGEELKWFQRINLGDNKYRNGITACSFLIGYGILFAVWMFTLRSV
RFLILRKGGQSVSFVTYGPFNRNRIMTVPLKCVSAEESRNMARVQLPIKV
KGKTLYYVLDMRGEFRNGELFDYTAGLKRRIASFLDH

BO04253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-PB 231 CG12935-PB 1..231 1..231 1198 100 Plus
CG12935-PA 231 CG12935-PA 1..231 1..231 1198 100 Plus