Clone Sequence Records
BO04254.3prime Sequence
934 bp (763 high quality bases) assembled on 2005-12-01
> BO04254.3prime
ATGGTCTAGAAAGCTTGCCTTGGTCGCGTCTAGTTTGGCTAGGCCGTCGG
CATATTGGAACTCCGGACTGTTCTCGTACTCGCACATGTCCAGGGCGATG
ACGCAGCTCTCCTTGACCACGCGCTTGTCGTCCTCGGCGTAGCGGTTCAA
GATCTGAATGCAGTCCTCTGTGGCGATGGCGCCAAGGGCCTCGGCACACT
CGTGACGCACCATTTCGTTTTCCAGGCGATCCTCCAGATTCTCTTGAAGG
AAGGGAATGCTGCAGGGTTCTTGCAGCTGGCCCAGTACGAAGGCCACCTC
GTGGCGGAAGAGGGCGGAAGAGTCCTTAAGTCCCTCGGCAATGGCCAAGA
CACTCTCTTCGGTGCGCAGATTGCGCAGGCTGAACATGGCCCTATATCGA
TCGAACAGGCTCTGCTGGGCATCCAGATAGATGGCCTTCAGCTCGGTGAC
GCTCTTGTCGCCCGCAGTTGGCGGTGAGGGATCAACGGAGGCGTAAGGGT
TGCTGTCATCTACCTTTTGGCCACTCTGCAGCCAGCGGACGCGGTCCAGA
GCAATGGCACATGTTTCGGCCACCTCCACTACCGGATCTTGTTTGTACTC
CTCCAGAATTGGCAGCACATCTGGATGACCAATGGCGCCCATGGCCTCCG
CAGCCTCGTGGCGCACCATCGGCTCCTGGGTGGTGTCCTTTAGCACCTTG
GTGAGGATGTCTAACGCCTGTGCGTCCTGCATCTGACCCAAGCAGTAGGC
CAGCTCATGTTTGAGAAGGGCCGAATCATCGTCAAAGGCTTTGCTGATCG
CCTCGATGGCCGCTCCTCCGCCGATGTTCTTCAGCGTGAAGAGGGCTCGA
AAGCGCTCTTTCAGTGGGCGTTCCTTGTTGTTCAGAACGCCTCCAATGGC
CTCGATTTGCTGCTGCGAAACCATGTCGACTGAT
BO04254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2245-PA | 909 | l(3)s1921-RA | 1..906 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 84..989 | 924..19 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746570..31747475 | 19..924 | 4530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:14:31 has no hits.
BO04254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:01 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..909 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:47 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..909 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:32 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..989 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:08 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..989 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:08 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746570..31747482 | 19..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:32 Download gff for
BO04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572292..27573204 | 19..932 | 99 | | Plus |
BO04254.5prime Sequence
891 bp (809 high quality bases) assembled on 2005-12-01
> BO04254.5prime
GAAGTTATCAGTCGACATGGTTTCGCAGCAGCAAATCGAGGCCATTGGAG
GCGTTCTGAACAACAAGGAACGCCCACTGAAAGAGCGCTTTCGAGCCCTC
TTCACGCTGAAGAACATCGGCGGAGGAGCGGCCATCGAGGCGATCAGCAA
AGCCTTTGACGATGATTCGGCCCTTCTCAAACATGAGCTGGCCTACTGCT
TGGGTCAGATGCAGGACGCACAGGCGTTAGACATCCTCACCAAGGTGCTA
AAGGACACCACCCAGGAGCCGATGGTGCGCCACGAGGCTGCGGAGGCCAT
GGGCGCCATTGGTCATCCAGATGTGCTGCCAATTCTGGAGGAGTACAAAC
AAGATCCGGTAGTGGAGGTGGCCGAAACATGTGCCATTGCTCTGGACCGC
GTCCGCTGGCTGCAGAGTGGCCAAAAGGTAGATGACAGCAACCCTTACGC
CTCCGTTGATCCCTCACCGCCAACTGCGGGCGACAAGAGCGTCACCGAGC
TGAAGGCCATCTATCTGGATGCCCAGCAGAGCCTGTTCGATCGATATAGG
GCCATGTTCAGCCTGCGCAATCTGCGCACCGAAGAGAGTGTCTTGGCCAT
TGCCGAGGGACTTAAGGACTCTTCCGCCCTCTTCCGCCACGAGGTGGCCT
TCGTACTGGGCCAGCTGCAAGAACCCTGCAGCATTCCCTTCCTTCAAGAG
AATCTGGAGGATCGCCTGGAAAACGAAATGGTGCGTCACGAGTGTGCCGA
GGCCCTTGGCGCCATCGCCACAGAGGACTGCATTCAGATCTTGAACCGCT
ACGCCGAGGACGACAAGCGCGTGGTCAAGGAGAGCTGCGTCATCGCCCTG
GACATGTGCGAGTACGAGAACAGTCGGGAGTTCCATATGCC
BO04254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2245-PA | 909 | l(3)s1921-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 84..959 | 17..891 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746607..31747475 | 885..17 | 4330 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:56:43 has no hits.
BO04254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:02 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:48 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:33 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..959 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:57 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..959 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:57 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746600..31747482 | 9..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:33 Download gff for
BO04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572322..27573204 | 9..891 | 99 | | Minus |
BO04254.complete Sequence
940 bp (940 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629696
> BO04254.complete
GAAGTTATCAGTCGACATGGTTTCGCAGCAGCAAATCGAGGCCATTGGAG
GCGTTCTGAACAACAAGGAACGCCCACTGAAAGAGCGCTTTCGAGCCCTC
TTCACGCTGAAGAACATCGGCGGAGGAGCGGCCATCGAGGCGATCAGCAA
AGCCTTTGACGATGATTCGGCCCTTCTCAAACATGAGCTGGCCTACTGCT
TGGGTCAGATGCAGGACGCACAGGCGTTAGACATCCTCACCAAGGTGCTA
AAGGACACCACCCAGGAGCCGATGGTGCGCCACGAGGCTGCGGAGGCCAT
GGGCGCCATTGGTCATCCAGATGTGCTGCCAATTCTGGAGGAGTACAAAC
AAGATCCGGTAGTGGAGGTGGCCGAAACATGTGCCATTGCTCTGGACCGC
GTCCGCTGGCTGCAGAGTGGCCAAAAGGTAGATGACAGCAACCCTTACGC
CTCCGTTGATCCCTCACCGCCAACTGCGGGCGACAAGAGCGTCACCGAGC
TGAAGGCCATCTATCTGGATGCCCAGCAGAGCCTGTTCGATCGATATAGG
GCCATGTTCAGCCTGCGCAATCTGCGCACCGAAGAGAGTGTCTTGGCCAT
TGCCGAGGGACTTAAGGACTCTTCCGCCCTCTTCCGCCACGAGGTGGCCT
TCGTACTGGGCCAGCTGCAAGAACCCTGCAGCATTCCCTTCCTTCAAGAG
AATCTGGAGGATCGCCTGGAAAACGAAATGGTGCGTCACGAGTGTGCCGA
GGCCCTTGGCGCCATCGCCACAGAGGACTGCATTCAGATCTTGAACCGCT
ACGCCGAGGACGACAAGCGCGTGGTCAAGGAGAGCTGCGTCATCGCCCTG
GACATGTGCGAGTACGAGAACAGTCCGGAGTTCCAATATGCCGACGGCCT
AGCCAAACTAGACGCGACCAAGGCAAGCTTTCTAGACCAT
BO04254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 909 | CG2245-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 84..989 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746570..31747475 | 922..17 | 4530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:43:42 has no hits.
BO04254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:44 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:29 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 48..960 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:59 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 84..989 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:45 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 48..960 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:02 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 84..989 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:02 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746567..31747475 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:59 Download gff for
BO04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572289..27573197 | 17..924 | 99 | | Minus |
BO04254.pep Sequence
Translation from 16 to 940
> BO04254.pep
MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDD
SALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGH
PDVLPILEEYKQDPVVEVAETCAIALDRVRWLQSGQKVDDSNPYASVDPS
PPTAGDKSVTELKAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIAEGLK
DSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEALGAI
ATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAKLDA
TKASFLDH
BO04254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-PA | 302 | CG2245-PA | 1..302 | 1..302 | 1535 | 100 | Plus |
