Clone Sequence Records
BO04255.3prime Sequence
397 bp (379 high quality bases) assembled on 2005-12-01
> BO04255.3prime
ATGGTCTAGAAAGCTTGCATTCGGCTTGAAGTTTCGTAGGATTTTCAGGA
CCTCGATCTGAAAGTCAAGCTTGCGATCGGCGCACATCTGCTGCATGTGA
GGCTTAATGGTGTCGAAGAAGGCCTGATCAGGATCGGCGGACAAGTAGGC
GGTATTTGTACTGCAGGGTGGATCTGATGGTAACTGTGGAATATATGCGA
TTTCCGGAGTGGCGGTGTCCTCCTTGGCGCAGCCCAGATCTCCCAGAACC
GTATTTATGTTGCTTGGTATGGCTGGATTGCGGATGGCAGGCTCAATATT
CGATTCTTGGTCGGAGTTTCTCTTTCGTGGAGTCTTTGCAGATCTCTGTG
CGGCAGTGCTCACTCGCTTCCGTTTGGCCTGGGGCTTGGGTTGCTCC
BO04255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8359-PA | 765 | CG8359-RA | 384..762 | 397..19 | 1895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hng2-RA | 1207 | CG8359-RA | 428..806 | 397..19 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8806802..8807180 | 397..19 | 1895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:14:47 has no hits.
BO04255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:03 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-PA | 384..765 | 16..397 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:50 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-PA | 384..765 | 16..397 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:32 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-RA | 428..814 | 11..397 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:38 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hng2-RA | 428..814 | 11..397 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:38 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8806802..8807188 | 11..397 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:32 Download gff for
BO04255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4632524..4632910 | 11..397 | 98 | | Minus |
BO04255.5prime Sequence
451 bp (374 high quality bases) assembled on 2005-12-01
> BO04255.5prime
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTACGAAAAGGAACTGAGTT
TCCTGCTGAACGTGAAAGCAGAGTCGGAGGACGATGTAGAATCCTTGAAG
GAGCAACCCAAGCCCCCAGGCCCAACGGAAGCGAGTGAGCACTGCCGCAC
A
BO04255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8359-PA | 765 | CG8359-RA | 1..400 | 17..416 | 2000 | 100 | Plus |
CG8359-PA | 765 | CG8359-RA | 397..434 | 414..451 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hng2-RA | 1207 | CG8359-RA | 45..478 | 17..451 | 2135 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8806366..8806579 | 17..230 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 8806631..8806852 | 229..451 | 1050 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:24:01 has no hits.
BO04255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:04 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-PA | 1..433 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:51 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-PA | 1..433 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:57 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-RA | 45..477 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:35 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hng2-RA | 45..477 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:35 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8806366..8806579 | 17..230 | 100 | -> | Plus |
3R | 8806633..8806851 | 231..450 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:57 Download gff for
BO04255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4632088..4632301 | 17..230 | 100 | -> | Plus |
arm_3R | 4632355..4632573 | 231..450 | 99 | | Plus |
BO04255.complete Sequence
796 bp assembled on 2008-08-15
GenBank Submission: FJ629697
> BO04255.complete
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTACGAAAAGGAACTGAGTT
TCCTGCTGAACGTGAAAGCAGAGTCGGAGGACGATGTAGAATCCTTGAAG
GAGCAACCCAAGCCCCAGGCCAAACGGAAGCGAGTGAGCACTGCCGCACA
GAGATCTGCAAAGACTCCACGAAAGAGAAACTCCGACCAAGAATCGAATA
TTGAGCCTGCCATCCGCAATCCAGCCATACCAAGCAACATAAATACGGTT
CTGGGAGATCTGGGCTGCGCCAAGGAGGACACCGCCACTCCGGAAATCGC
ATATATTCCACAGTTACCATCAGATCCACCCTGCAGTACAAATACCGCCT
ACTTGTCCGCCGATCCTGATCAGGCCTTCTTCGACACCATTAAGCCTCAC
ATGCAGCAGATGTGCGCCGATCGCAAGCTTGACTTTCAGATCGAGGTCCT
GAAAATCCTACGAAACTTCAAGCCGAATGCAAGCTTTCTAGACCAT
BO04255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hng2-RA | 765 | CG8359-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hng2-RA | 1207 | CG8359-RA | 45..806 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8806631..8807180 | 229..778 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 8806366..8806579 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:04 has no hits.
BO04255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:34 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-RA | 32..801 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:54 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-RA | 45..806 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:34 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8359-RA | 32..793 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:32 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hng2-RA | 45..806 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:32 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8806366..8806579 | 17..230 | 100 | -> | Plus |
3R | 8806633..8807180 | 231..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:54 Download gff for
BO04255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4632088..4632301 | 17..230 | 100 | -> | Plus |
arm_3R | 4632355..4632902 | 231..780 | 99 | | Plus |
BO04255.pep Sequence
Translation from 16 to 796
> BO04255.pep
MGNHKVLRSAGSNLRYSMYEFIDAVHKRSIIWERSHPNFHNRELRDEAWQ
QIGHELCSNFDDSSEPEKQEIVKTLLKRWKNTRDSYLRVNRLRQSGEEVA
RASYIYEKELSFLLNVKAESEDDVESLKEQPKPQAKRKRVSTAAQRSAKT
PRKRNSDQESNIEPAIRNPAIPSNINTVLGDLGCAKEDTATPEIAYIPQL
PSDPPCSTNTAYLSADPDQAFFDTIKPHMQQMCADRKLDFQIEVLKILRN
FKPNASFLDH
BO04255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hng2-PA | 254 | CG8359-PA | 1..254 | 1..254 | 1329 | 100 | Plus |