Clone BO04255 Report

Search the DGRC for BO04255

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG8359-RA
Protein status:BO04255.pep: Imported from assembly
Sequenced Size:796

Clone Sequence Records

BO04255.3prime Sequence

397 bp (379 high quality bases) assembled on 2005-12-01

> BO04255.3prime
ATGGTCTAGAAAGCTTGCATTCGGCTTGAAGTTTCGTAGGATTTTCAGGA
CCTCGATCTGAAAGTCAAGCTTGCGATCGGCGCACATCTGCTGCATGTGA
GGCTTAATGGTGTCGAAGAAGGCCTGATCAGGATCGGCGGACAAGTAGGC
GGTATTTGTACTGCAGGGTGGATCTGATGGTAACTGTGGAATATATGCGA
TTTCCGGAGTGGCGGTGTCCTCCTTGGCGCAGCCCAGATCTCCCAGAACC
GTATTTATGTTGCTTGGTATGGCTGGATTGCGGATGGCAGGCTCAATATT
CGATTCTTGGTCGGAGTTTCTCTTTCGTGGAGTCTTTGCAGATCTCTGTG
CGGCAGTGCTCACTCGCTTCCGTTTGGCCTGGGGCTTGGGTTGCTCC

BO04255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8359-PA 765 CG8359-RA 384..762 397..19 1895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
hng2-RA 1207 CG8359-RA 428..806 397..19 1895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8806802..8807180 397..19 1895 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:14:47 has no hits.

BO04255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:03 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-PA 384..765 16..397 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:50 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-PA 384..765 16..397 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:32 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-RA 428..814 11..397 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:38 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
hng2-RA 428..814 11..397 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:38 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8806802..8807188 11..397 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:32 Download gff for BO04255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4632524..4632910 11..397 98   Minus

BO04255.5prime Sequence

451 bp (374 high quality bases) assembled on 2005-12-01

> BO04255.5prime
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTACGAAAAGGAACTGAGTT
TCCTGCTGAACGTGAAAGCAGAGTCGGAGGACGATGTAGAATCCTTGAAG
GAGCAACCCAAGCCCCCAGGCCCAACGGAAGCGAGTGAGCACTGCCGCAC
A

BO04255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8359-PA 765 CG8359-RA 1..400 17..416 2000 100 Plus
CG8359-PA 765 CG8359-RA 397..434 414..451 165 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
hng2-RA 1207 CG8359-RA 45..478 17..451 2135 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8806366..8806579 17..230 1070 100 Plus
3R 32079331 3R 8806631..8806852 229..451 1050 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 02:24:01 has no hits.

BO04255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:04 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-PA 1..433 17..450 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:51 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-PA 1..433 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:57 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8359-RA 45..477 17..450 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:35 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
hng2-RA 45..477 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:35 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8806366..8806579 17..230 100 -> Plus
3R 8806633..8806851 231..450 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:57 Download gff for BO04255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4632088..4632301 17..230 100 -> Plus
arm_3R 4632355..4632573 231..450 99   Plus

BO04255.complete Sequence

796 bp assembled on 2008-08-15

GenBank Submission: FJ629697

> BO04255.complete
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTACGAAAAGGAACTGAGTT
TCCTGCTGAACGTGAAAGCAGAGTCGGAGGACGATGTAGAATCCTTGAAG
GAGCAACCCAAGCCCCAGGCCAAACGGAAGCGAGTGAGCACTGCCGCACA
GAGATCTGCAAAGACTCCACGAAAGAGAAACTCCGACCAAGAATCGAATA
TTGAGCCTGCCATCCGCAATCCAGCCATACCAAGCAACATAAATACGGTT
CTGGGAGATCTGGGCTGCGCCAAGGAGGACACCGCCACTCCGGAAATCGC
ATATATTCCACAGTTACCATCAGATCCACCCTGCAGTACAAATACCGCCT
ACTTGTCCGCCGATCCTGATCAGGCCTTCTTCGACACCATTAAGCCTCAC
ATGCAGCAGATGTGCGCCGATCGCAAGCTTGACTTTCAGATCGAGGTCCT
GAAAATCCTACGAAACTTCAAGCCGAATGCAAGCTTTCTAGACCAT

BO04255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
hng2-RA 765 CG8359-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
hng2-RA 1207 CG8359-RA 45..806 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8806631..8807180 229..778 2750 100 Plus
3R 32079331 3R 8806366..8806579 17..230 1070 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:04 has no hits.

BO04255.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:34 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
CG8359-RA 32..801 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:54 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
CG8359-RA 45..806 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:34 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
CG8359-RA 32..793 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:32 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
hng2-RA 45..806 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:32 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8806366..8806579 17..230 100 -> Plus
3R 8806633..8807180 231..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:54 Download gff for BO04255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4632088..4632301 17..230 100 -> Plus
arm_3R 4632355..4632902 231..780 99   Plus

BO04255.pep Sequence

Translation from 16 to 796

> BO04255.pep
MGNHKVLRSAGSNLRYSMYEFIDAVHKRSIIWERSHPNFHNRELRDEAWQ
QIGHELCSNFDDSSEPEKQEIVKTLLKRWKNTRDSYLRVNRLRQSGEEVA
RASYIYEKELSFLLNVKAESEDDVESLKEQPKPQAKRKRVSTAAQRSAKT
PRKRNSDQESNIEPAIRNPAIPSNINTVLGDLGCAKEDTATPEIAYIPQL
PSDPPCSTNTAYLSADPDQAFFDTIKPHMQQMCADRKLDFQIEVLKILRN
FKPNASFLDH

BO04255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
hng2-PA 254 CG8359-PA 1..254 1..254 1329 100 Plus