Clone BO04256 Report

Search the DGRC for BO04256

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG3587-RA
Protein status:BO04256.pep: validated full length
Sequenced Size:931

Clone Sequence Records

BO04256.3prime Sequence

900 bp (775 high quality bases) assembled on 2005-12-01

> BO04256.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGATCGTGTTGGCATTGATGAACTGCA
CGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGCG
TGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGGC
ATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGCA
GCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGATC
GCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCGG
TGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAGG
CCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCACC
AGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGCA
CAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACCG
GCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTGG
CTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGCA
CTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAGC
CTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAAGG
TGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCTG
CGAATCACCTGTATGGGAATTCTTTCCAAAACCCGCCTTGGGCACTGCCT
CGTTTTCGCTGATTAGATGCACCTTCCTGCCGCGCTCCACGAAATGATCC
CGTAGCTGGCGGGCACGTGTGCTCTTTCGGCTGGCTGGCAGGCCCGTAAT

BO04256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 16..897 900..19 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 96..977 900..19 4395 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 652..303 1750 100 Minus
X 23542271 X 1941124..1941408 303..19 1425 100 Minus
X 23542271 X 1940402..1940652 900..650 1240 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 23:52:15 has no hits.

BO04256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:05 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 16..900 18..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:52 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 16..900 18..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:07 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 167..1052 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:40 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 96..981 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:40 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1940402..1940651 651..900 99 -> Minus
X 1940710..1941056 304..650 100 -> Minus
X 1941124..1941412 13..303 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:07 Download gff for BO04256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834435..1834684 651..900 99 -> Minus
arm_X 1834743..1835089 304..650 100 -> Minus
arm_X 1835157..1835445 13..303 98   Minus

BO04256.5prime Sequence

924 bp (747 high quality bases) assembled on 2005-12-01

> BO04256.5prime
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCCCAAGCTTTCT

BO04256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 80..977 16..913 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 280..629 1750 100 Plus
X 23542271 X 1941124..1941408 629..913 1425 100 Plus
X 23542271 X 1940386..1940652 16..282 1335 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:01:00 has no hits.

BO04256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:06 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 1..900 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:54 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 1..900 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:16 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1052 16..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:57 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 80..981 16..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:57 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1941124..1941412 629..919 98   Plus
X 1940386..1940651 16..281 100 -> Plus
X 1940710..1941056 282..628 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:16 Download gff for BO04256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834419..1834684 16..281 100 -> Plus
arm_X 1834743..1835089 282..628 100 -> Plus
arm_X 1835157..1835445 629..919 98   Plus

BO04256.complete Sequence

931 bp (931 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629698

> BO04256.complete
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCGCAAGCTTTCTAGACCAT

BO04256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 900 CG3587-PA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 80..977 16..913 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 280..629 1750 100 Plus
X 23542271 X 1941124..1941408 629..913 1425 100 Plus
X 23542271 X 1940386..1940652 16..282 1335 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:29:38 has no hits.

BO04256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:36 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 1..900 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:50 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1052 16..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:46 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 152..1048 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:36 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1052 16..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:12 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 81..977 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:12 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
X 1940387..1940651 17..281 100 -> Plus
X 1940710..1941056 282..628 100 -> Plus
X 1941124..1941408 629..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:46 Download gff for BO04256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834420..1834684 17..281 100 -> Plus
arm_X 1834743..1835089 282..628 100 -> Plus
arm_X 1835157..1835441 629..915 99   Plus

BO04256.pep Sequence

Translation from 16 to 931

> BO04256.pep
MPLVVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAGFGKNS
HTGDSQKEKVVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKV
SRTTQCTVFTCIPQEEAWTFNSQRTAPDELPGDSERVQPVDNSDVPYTRE
TFDALCQRYEEPQSNNRWDSPLVVVLPKDTLDMEAIYKALYESQPLPPNQ
STYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQLRIPGSRNPVKV
ATSMNALQLNRLRQKFITSTCHASQTSPTPLEQVPHLFVQFINANTIGCA
SFLDH

BO04256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 299 CG3587-PA 1..299 1..299 1559 100 Plus