Clone Sequence Records
BO04256.3prime Sequence
900 bp (775 high quality bases) assembled on 2005-12-01
> BO04256.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGATCGTGTTGGCATTGATGAACTGCA
CGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGCG
TGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGGC
ATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGCA
GCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGATC
GCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCGG
TGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAGG
CCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCACC
AGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGCA
CAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACCG
GCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTGG
CTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGCA
CTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAGC
CTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAAGG
TGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCTG
CGAATCACCTGTATGGGAATTCTTTCCAAAACCCGCCTTGGGCACTGCCT
CGTTTTCGCTGATTAGATGCACCTTCCTGCCGCGCTCCACGAAATGATCC
CGTAGCTGGCGGGCACGTGTGCTCTTTCGGCTGGCTGGCAGGCCCGTAAT
BO04256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 16..897 | 900..19 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 96..977 | 900..19 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 652..303 | 1750 | 100 | Minus |
X | 23542271 | X | 1941124..1941408 | 303..19 | 1425 | 100 | Minus |
X | 23542271 | X | 1940402..1940652 | 900..650 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:52:15 has no hits.
BO04256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:05 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 16..900 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:52 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 16..900 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:07 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 167..1052 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:40 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 96..981 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:40 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1940402..1940651 | 651..900 | 99 | -> | Minus |
X | 1940710..1941056 | 304..650 | 100 | -> | Minus |
X | 1941124..1941412 | 13..303 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:07 Download gff for
BO04256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834435..1834684 | 651..900 | 99 | -> | Minus |
arm_X | 1834743..1835089 | 304..650 | 100 | -> | Minus |
arm_X | 1835157..1835445 | 13..303 | 98 | | Minus |
BO04256.5prime Sequence
924 bp (747 high quality bases) assembled on 2005-12-01
> BO04256.5prime
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCCCAAGCTTTCT
BO04256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 80..977 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 280..629 | 1750 | 100 | Plus |
X | 23542271 | X | 1941124..1941408 | 629..913 | 1425 | 100 | Plus |
X | 23542271 | X | 1940386..1940652 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:01:00 has no hits.
BO04256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:06 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 1..900 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:54 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 1..900 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:16 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1052 | 16..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:57 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 80..981 | 16..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:57 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1941124..1941412 | 629..919 | 98 | | Plus |
X | 1940386..1940651 | 16..281 | 100 | -> | Plus |
X | 1940710..1941056 | 282..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:16 Download gff for
BO04256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834419..1834684 | 16..281 | 100 | -> | Plus |
arm_X | 1834743..1835089 | 282..628 | 100 | -> | Plus |
arm_X | 1835157..1835445 | 629..919 | 98 | | Plus |
BO04256.complete Sequence
931 bp (931 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629698
> BO04256.complete
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCGCAAGCTTTCTAGACCAT
BO04256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 900 | CG3587-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 80..977 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 280..629 | 1750 | 100 | Plus |
X | 23542271 | X | 1941124..1941408 | 629..913 | 1425 | 100 | Plus |
X | 23542271 | X | 1940386..1940652 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:29:38 has no hits.
BO04256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:36 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:50 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1052 | 16..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:46 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 152..1048 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:36 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1052 | 16..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:12 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 81..977 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:12 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1940387..1940651 | 17..281 | 100 | -> | Plus |
X | 1940710..1941056 | 282..628 | 100 | -> | Plus |
X | 1941124..1941408 | 629..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:46 Download gff for
BO04256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834420..1834684 | 17..281 | 100 | -> | Plus |
arm_X | 1834743..1835089 | 282..628 | 100 | -> | Plus |
arm_X | 1835157..1835441 | 629..915 | 99 | | Plus |
BO04256.pep Sequence
Translation from 16 to 931
> BO04256.pep
MPLVVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAGFGKNS
HTGDSQKEKVVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKV
SRTTQCTVFTCIPQEEAWTFNSQRTAPDELPGDSERVQPVDNSDVPYTRE
TFDALCQRYEEPQSNNRWDSPLVVVLPKDTLDMEAIYKALYESQPLPPNQ
STYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQLRIPGSRNPVKV
ATSMNALQLNRLRQKFITSTCHASQTSPTPLEQVPHLFVQFINANTIGCA
SFLDH
BO04256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 299 | CG3587-PA | 1..299 | 1..299 | 1559 | 100 | Plus |