Clone Sequence Records
BO04258.3prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-01
> BO04258.3prime
ATGGTCTAGAAAGCTTGCGTCGGCATTCCGTTTGCGCCGCAGCTCCTTTT
TGTTGACCATCCGACCCTTTCGGTATTTGGTCTGGTTGGCCTTTCCGTAC
TTGAGCTGCTTGCGCTGATGCTTGGGAACGCTCTTGATGGTGTTGTTGCG
GTCCCGCTTGGCCTTCTTCTGGTTGTTCTTCTTGTCCAGGCGCTCCTTCT
GCTTGAACAGTTTGCTCTGGTGCATTTTCTTCAGCGTTTTGGTCTTCATC
AGGCGGTCGAGATCCTTTTTGCTCTTGATGTCCGGCAGCGTGGAGTTGTT
GGACTTTGTGGCCTTCGGCTCCTCTTCGTCCTCCGGCTTGGGTTTACGTT
TGCGGGCGTTGGGATCGAAATCCATGCCGGGTATCCTATTGGCCTGGTCG
GCTTCGTCCTCCTCGCTCTGGTCAGCCTGCTCCTCCGGTTCGCTTTCCTC
TGCCGTGTTGGCACCCAACATATTGCGCTTGGCGGCCAGATCGTTGGTGG
TCAGCTCCACGATCTTCACCTGCACTTCATCATCTTCGTAGGTCTCCTCC
TGCTGCTGCTCCGCCTCCTCGGCCTTGTCCTCCTCGGTGAGCTCGCGCAG
CGGTTCGAAGGATTTCTTCAGGTGGTTAAAGCCATCCTTTACCTCCTGCC
GTATGCGCTTGCGCTCGTTCTTAAGGTTTCTTTCCAGATCCGCCTTTGCA
CGCGATCGTCGCTCATTCTTTCTTTTCCGGAAGCCACTGAGAAACTCTAT
GCGTTTCTTGTTGTCGAATACAACCTCTGTTTTTTTCTTAGGAGCCTTTT
TCCTGGTCATGTCGACTGATAACT
BO04258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32418-PA | 795 | CG32418-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vito-RA | 951 | CG32418-RA | 69..860 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5776415..5777149 | 19..753 | 3660 | 99.9 | Plus |
| 3L | 28110227 | 3L | 5777204..5777265 | 749..810 | 310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10217..10348 | 607..473 | 109 | 55.6 | Minus |
BO04258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:08 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:58 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:18 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..867 | 10..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:17 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..867 | 10..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:17 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5776408..5777144 | 10..748 | 99 | <- | Plus |
| 3L | 5777204..5777265 | 749..810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:18 Download gff for
BO04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5769508..5770244 | 10..748 | 99 | <- | Plus |
| arm_3L | 5770304..5770365 | 749..810 | 100 | | Plus |
BO04258.5prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-01
> BO04258.5prime
GAAGTTATCAGTCGACATGACCAGGAAAAAGGCTCCTAAGAAAAAAACAG
AGGTTGTATTCGACAACAAGAAACGCATAGAGTTTCTCAGTGGCTTCCGG
AAAAGAAAGAATGAGCGACGATCGCGTGCAAAGGCGGATCTGGAAAGAAA
CCTTAAGAACGAGCGCAAGCGCATACGGCAGGAGGTAAAGGATGGCTTTA
ACCACCTGAAGAAATCCTTCGAACCGCTGCGCGAGCTCACCGAGGAGGAC
AAGGCCGAGGAGGCGGAGCAGCAGCAGGAGGAGACCTACGAAGATGATGA
AGTGCAGGTGAAGATCGTGGAGCTGACCACCAACGATCTGGCCGCCAAGC
GCAATATGTTGGGTGCCAACACGGCAGAGGAAAGCGAACCGGAGGAGCAG
GCTGACCAGAGCGAGGAGGACGAAGCCGACCAGGCCAATAGGATACCCGG
CATGGATTTCGATCCCAACGCCCGCAAACGTAAACCCAAGCCGGAGGACG
AAGAGGAGCCGAAGGCCACAAAGTCCAACAACTCCACGCTGCCGGACATC
AAGAGCAAAAAGGATCTCGACCGCCTGATGAAGACCAAAACGCTGAAGAA
AATGCACCAGAGCAAACTGTTCAAGCAGAAGGAGCGCCTGGACAAGAAGA
ACAACCAGAAGAAGGCCAAGCGGGACCGCAACAACACCATCAAGAGCGTT
CCCAAGCATCAGCGCAAGCAGCTCAAGTACGGAAAGGCCAACCAGACCAA
ATACCGAAAGGGTCGGATGGTCAACAAAAAGGAGCTGCGGCGCAAACGGA
ATGCCGACGCAAGCTTTCTAGACC
BO04258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32418-PA | 795 | CG32418-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vito-RA | 951 | CG32418-RA | 69..860 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5776415..5777149 | 808..74 | 3660 | 99.9 | Minus |
| 3L | 28110227 | 3L | 5777204..5777265 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10217..10348 | 220..354 | 109 | 55.6 | Plus |
BO04258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:09 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:08:59 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:15 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..867 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:21 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..867 | 17..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:21 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5776408..5777144 | 79..817 | 99 | <- | Minus |
| 3L | 5777204..5777265 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:15 Download gff for
BO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5769508..5770244 | 79..817 | 99 | <- | Minus |
| arm_3L | 5770304..5770365 | 17..78 | 100 | | Minus |
BO04258.complete Sequence
826 bp (826 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629699
> BO04258.complete
GAAGTTATCAGTCGACATGACCAGGAAAAAGGCTCCTAAGAAAAAAACAG
AGGTTGTATTCGACAACAAGAAACGCATAGAGTTTCTCAGTGGCTTCCGG
AAAAGAAAGAATGAGCGACGATCGCGTGCAAAGGCGGATCTGGAAAGAAA
CCTTAAGAACGAGCGCAAGCGCATACGGCAGGAGGTAAAGGATGGCTTTA
ACCACCTGAAGAAATCCTTCGAACCGCTGCGCGAGCTCACCGAGGAGGAC
AAGGCCGAGGAGGCGGAGCAGCAGCAGGAGGAGACCTACGAAGATGATGA
AGTGCAGGTGAAGATCGTGGAGCTGACCACCAACGATCTGGCCGCCAAGC
GCAATATGTTGGGTGCCAACACGGCAGAGGAAAGCGAACCGGAGGAGCAG
GCTGACCAGAGCGAGGAGGACGAAGCCGACCAGGCCAATAGGATACCCGG
CATGGATTTCGATCCCAACGCCCGCAAACGTAAACCCAAGCCGGAGGACG
AAGAGGAGCCGAAGGCCACAAAGTCCAACAACTCCACGCTGCCGGACATC
AAGAGCAAAAAGGATCTCGACCGCCTGATGAAGACCAAAACGCTGAAGAA
AATGCACCAGAGCAAACTGTTCAAGCAGAAGGAGCGCCTGGACAAGAAGA
ACAACCAGAAGAAGGCCAAGCGGGACCGCAACAACACCATCAAGAGCGTT
CCCAAGCATCAGCGCAAGCAGCTCAAGTACGGAAAGGCCAACCAGACCAA
ATACCGAAAGGGTCGGATGGTCAACAAAAAGGAGCTGCGGCGCAAACGGA
ATGCCGACGCAAGCTTTCTAGACCAT
BO04258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vito-RA | 795 | CG32418-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vito-RA | 951 | CG32418-RA | 69..860 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5776415..5777149 | 808..74 | 3660 | 99.9 | Minus |
| 3L | 28110227 | 3L | 5777204..5777265 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10217..10348 | 220..354 | 109 | 55.6 | Plus |
BO04258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:15 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:42 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-RA | 25..823 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:07 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..860 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:15 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32418-RA | 25..823 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:16 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vito-RA | 69..860 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:16 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5776413..5777144 | 79..810 | 99 | <- | Minus |
| 3L | 5777204..5777265 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:07 Download gff for
BO04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5769513..5770244 | 79..810 | 99 | <- | Minus |
| arm_3L | 5770304..5770365 | 17..78 | 100 | | Minus |
BO04258.pep Sequence
Translation from 16 to 826
> BO04258.pep
MTRKKAPKKKTEVVFDNKKRIEFLSGFRKRKNERRSRAKADLERNLKNER
KRIRQEVKDGFNHLKKSFEPLRELTEEDKAEEAEQQQEETYEDDEVQVKI
VELTTNDLAAKRNMLGANTAEESEPEEQADQSEEDEADQANRIPGMDFDP
NARKRKPKPEDEEEPKATKSNNSTLPDIKSKKDLDRLMKTKTLKKMHQSK
LFKQKERLDKKNNQKKAKRDRNNTIKSVPKHQRKQLKYGKANQTKYRKGR
MVNKKELRRKRNADASFLDH
BO04258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vito-PA | 264 | CG32418-PA | 1..264 | 1..264 | 1348 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 306..566 | 3..264 | 150 | 21.7 | Plus |
