Clone BO04259 Report

Search the DGRC for BO04259

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG2656-RA
Protein status:BO04259.pep: validated full length
Sequenced Size:883

Clone Sequence Records

BO04259.3prime Sequence

881 bp (880 high quality bases) assembled on 2005-12-01

> BO04259.3prime
ATGGTCTAGAAAGCTTGCATCCTGATCCCCTTCCTCCGGTTCATCAAAGT
CCTTAACGTTCACGTCTGCATCCTCGCCGTACTGCAAGATACTGTCAATT
TGTAGCAGAAGATCGCCCACGCTCTCCTCGTCCTGGGAATCCAACGGGAA
AAATCTCACCAAACTGAAATCCTCAATTAGCGCGCCAATAGCCTGCGTAA
GCTTTGCGTATTTCTCGCCAAAACCAGTCCCGATGGTCAGCTCGCCCATC
AGACTGTGGGCATCCGGTTCCAGGTACATCTCCAGCTGTTTCCGCGCATC
GCTGCTCAGCAGATCCACTTTGGTCAGCACATTGATGTGCGGCTGCTCCA
TGTTGGCCATCACACTGAGCGCGGCCATGGTGCCGGAAATGAACTTGGCC
CCGTCCACCATGAACTGCGAGTCCAAGCAGAAGACGACGCATGTGCGGAA
GTTCCAGGACTCGAGCAGTTCCACCAGCTGTCTGCCCATCTTTAGGTGAG
TGAAGAGCTCGATCTGGCCGGGCATGTCGAACAGGATGTAGTCATCATCC
GGCTCGCCCACCATCAGCTCGTTCTCGCCGCCGCAGAGCTGTTCCTTCAG
CCATTCCTGGTTCTCGATCAAGAACTCCAGGCAGAAGATGAGGCCGCCGT
TCGGTCCGTAGTGCAGCTCTTCGTCCTCCATGGCATCGTCCAGGTGGATT
AGATCGCGAATGTCCGTCAGCGGGTTGTAGGTGAAGTGCTCTGCCGCCGG
ATCGAGGTTCACCACCTGAACATTTCTCTTGCAGTCCATCGCATATTGCT
GCATTAAGCTGCAGTACGTCGACTTGCCACTGCCTGCCGGGCCCACAATT
ATTTGGGCAAACCGCATGTCGACTGATAACT

BO04259.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-PA 852 CG2656-RA 1..849 867..19 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-RA 1016 CG2656-RA 92..941 868..19 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7144921..7145581 824..164 3305 100 Minus
3R 32079331 3R 7151048..7151195 166..19 740 100 Minus
3R 32079331 3R 7144815..7144860 868..823 230 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:56:52 has no hits.

BO04259.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:10 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-PA 1..852 16..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:00 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-PA 1..852 16..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:35 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 85..945 15..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:42 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 85..945 15..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:42 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7144808..7144860 823..876 92 -> Minus
3R 7144923..7145581 164..822 100 -> Minus
3R 7151051..7151199 15..163 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:35 Download gff for BO04259.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2970530..2970582 823..876 92 -> Minus
arm_3R 2970645..2971303 164..822 100 -> Minus
arm_3R 2976773..2976921 15..163 98   Minus

BO04259.5prime Sequence

779 bp (762 high quality bases) assembled on 2005-12-01

> BO04259.5prime
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGC

BO04259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-PA 852 CG2656-RA 1..763 17..779 3815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-RA 1016 CG2656-RA 92..855 16..779 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7144921..7145581 60..720 3305 100 Plus
3R 32079331 3R 7151048..7151109 718..779 310 100 Plus
3R 32079331 3R 7144815..7144860 16..61 230 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:19:55 has no hits.

BO04259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:11 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:02 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:07 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 85..855 8..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:07 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 85..855 8..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:07 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7151051..7151109 721..779 100   Plus
3R 7144808..7144860 8..61 92 -> Plus
3R 7144923..7145581 62..720 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:07 Download gff for BO04259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2970530..2970582 8..61 92 -> Plus
arm_3R 2970645..2971303 62..720 100 -> Plus
arm_3R 2976773..2976831 721..779 100   Plus

BO04259.complete Sequence

883 bp (883 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629700

> BO04259.complete
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGC
AGTACGGCGAGGATGCAGACGTGAACGTTAAGGACTTTGATGAACCGGAG
GAAGGGGATCAGGATGCAAGCTTTCTAGACCAT

BO04259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-RA 852 CG2656-PA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-RA 1016 CG2656-RA 92..941 16..865 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7144921..7145581 60..720 3305 100 Plus
3R 32079331 3R 7151048..7151195 718..865 740 100 Plus
3R 32079331 3R 7144815..7144860 16..61 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:27 has no hits.

BO04259.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:41 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:34 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 66..926 8..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:50 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 93..941 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:41 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 66..926 8..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:24 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
CG2656-RA 93..941 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:24 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7144816..7144860 17..61 100 -> Plus
3R 7144923..7145581 62..720 100 -> Plus
3R 7151051..7151195 721..867 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:50 Download gff for BO04259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2976773..2976917 721..867 98   Plus
arm_3R 2970538..2970582 17..61 100 -> Plus
arm_3R 2970645..2971303 62..720 100 -> Plus

BO04259.pep Sequence

Translation from 16 to 883

> BO04259.pep
MRFAQIIVGPAGSGKSTYCSLMQQYAMDCKRNVQVVNLDPAAEHFTYNPL
TDIRDLIHLDDAMEDEELHYGPNGGLIFCLEFLIENQEWLKEQLCGGENE
LMVGEPDDDYILFDMPGQIELFTHLKMGRQLVELLESWNFRTCVVFCLDS
QFMVDGAKFISGTMAALSVMANMEQPHINVLTKVDLLSSDARKQLEMYLE
PDAHSLMGELTIGTGFGEKYAKLTQAIGALIEDFSLVRFFPLDSQDEESV
GDLLLQIDSILQYGEDADVNVKDFDEPEEGDQDASFLDH

BO04259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2656-PA 283 CG2656-PA 1..283 1..283 1482 100 Plus
CG10222-PB 307 CG10222-PB 15..282 2..270 399 36.7 Plus
CG10222-PA 307 CG10222-PA 15..282 2..270 399 36.7 Plus
CG3704-PA 382 CG3704-PA 27..228 6..211 215 30.7 Plus