Clone Sequence Records
BO04259.3prime Sequence
881 bp (880 high quality bases) assembled on 2005-12-01
> BO04259.3prime
ATGGTCTAGAAAGCTTGCATCCTGATCCCCTTCCTCCGGTTCATCAAAGT
CCTTAACGTTCACGTCTGCATCCTCGCCGTACTGCAAGATACTGTCAATT
TGTAGCAGAAGATCGCCCACGCTCTCCTCGTCCTGGGAATCCAACGGGAA
AAATCTCACCAAACTGAAATCCTCAATTAGCGCGCCAATAGCCTGCGTAA
GCTTTGCGTATTTCTCGCCAAAACCAGTCCCGATGGTCAGCTCGCCCATC
AGACTGTGGGCATCCGGTTCCAGGTACATCTCCAGCTGTTTCCGCGCATC
GCTGCTCAGCAGATCCACTTTGGTCAGCACATTGATGTGCGGCTGCTCCA
TGTTGGCCATCACACTGAGCGCGGCCATGGTGCCGGAAATGAACTTGGCC
CCGTCCACCATGAACTGCGAGTCCAAGCAGAAGACGACGCATGTGCGGAA
GTTCCAGGACTCGAGCAGTTCCACCAGCTGTCTGCCCATCTTTAGGTGAG
TGAAGAGCTCGATCTGGCCGGGCATGTCGAACAGGATGTAGTCATCATCC
GGCTCGCCCACCATCAGCTCGTTCTCGCCGCCGCAGAGCTGTTCCTTCAG
CCATTCCTGGTTCTCGATCAAGAACTCCAGGCAGAAGATGAGGCCGCCGT
TCGGTCCGTAGTGCAGCTCTTCGTCCTCCATGGCATCGTCCAGGTGGATT
AGATCGCGAATGTCCGTCAGCGGGTTGTAGGTGAAGTGCTCTGCCGCCGG
ATCGAGGTTCACCACCTGAACATTTCTCTTGCAGTCCATCGCATATTGCT
GCATTAAGCTGCAGTACGTCGACTTGCCACTGCCTGCCGGGCCCACAATT
ATTTGGGCAAACCGCATGTCGACTGATAACT
BO04259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-PA | 852 | CG2656-RA | 1..849 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-RA | 1016 | CG2656-RA | 92..941 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7144921..7145581 | 824..164 | 3305 | 100 | Minus |
3R | 32079331 | 3R | 7151048..7151195 | 166..19 | 740 | 100 | Minus |
3R | 32079331 | 3R | 7144815..7144860 | 868..823 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:56:52 has no hits.
BO04259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:10 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-PA | 1..852 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:00 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-PA | 1..852 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:35 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 85..945 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:42 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 85..945 | 15..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:42 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7144808..7144860 | 823..876 | 92 | -> | Minus |
3R | 7144923..7145581 | 164..822 | 100 | -> | Minus |
3R | 7151051..7151199 | 15..163 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:35 Download gff for
BO04259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2970530..2970582 | 823..876 | 92 | -> | Minus |
arm_3R | 2970645..2971303 | 164..822 | 100 | -> | Minus |
arm_3R | 2976773..2976921 | 15..163 | 98 | | Minus |
BO04259.5prime Sequence
779 bp (762 high quality bases) assembled on 2005-12-01
> BO04259.5prime
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGC
BO04259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-PA | 852 | CG2656-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-RA | 1016 | CG2656-RA | 92..855 | 16..779 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7144921..7145581 | 60..720 | 3305 | 100 | Plus |
3R | 32079331 | 3R | 7151048..7151109 | 718..779 | 310 | 100 | Plus |
3R | 32079331 | 3R | 7144815..7144860 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:19:55 has no hits.
BO04259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:11 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:02 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:07 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 85..855 | 8..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:07 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 85..855 | 8..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:07 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7151051..7151109 | 721..779 | 100 | | Plus |
3R | 7144808..7144860 | 8..61 | 92 | -> | Plus |
3R | 7144923..7145581 | 62..720 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:07 Download gff for
BO04259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2970530..2970582 | 8..61 | 92 | -> | Plus |
arm_3R | 2970645..2971303 | 62..720 | 100 | -> | Plus |
arm_3R | 2976773..2976831 | 721..779 | 100 | | Plus |
BO04259.complete Sequence
883 bp (883 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629700
> BO04259.complete
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGC
AGTACGGCGAGGATGCAGACGTGAACGTTAAGGACTTTGATGAACCGGAG
GAAGGGGATCAGGATGCAAGCTTTCTAGACCAT
BO04259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-RA | 852 | CG2656-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-RA | 1016 | CG2656-RA | 92..941 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7144921..7145581 | 60..720 | 3305 | 100 | Plus |
3R | 32079331 | 3R | 7151048..7151195 | 718..865 | 740 | 100 | Plus |
3R | 32079331 | 3R | 7144815..7144860 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:27 has no hits.
BO04259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:41 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:34 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 66..926 | 8..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:50 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 93..941 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:41 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 66..926 | 8..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:24 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2656-RA | 93..941 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:24 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7144816..7144860 | 17..61 | 100 | -> | Plus |
3R | 7144923..7145581 | 62..720 | 100 | -> | Plus |
3R | 7151051..7151195 | 721..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:50 Download gff for
BO04259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2976773..2976917 | 721..867 | 98 | | Plus |
arm_3R | 2970538..2970582 | 17..61 | 100 | -> | Plus |
arm_3R | 2970645..2971303 | 62..720 | 100 | -> | Plus |
BO04259.pep Sequence
Translation from 16 to 883
> BO04259.pep
MRFAQIIVGPAGSGKSTYCSLMQQYAMDCKRNVQVVNLDPAAEHFTYNPL
TDIRDLIHLDDAMEDEELHYGPNGGLIFCLEFLIENQEWLKEQLCGGENE
LMVGEPDDDYILFDMPGQIELFTHLKMGRQLVELLESWNFRTCVVFCLDS
QFMVDGAKFISGTMAALSVMANMEQPHINVLTKVDLLSSDARKQLEMYLE
PDAHSLMGELTIGTGFGEKYAKLTQAIGALIEDFSLVRFFPLDSQDEESV
GDLLLQIDSILQYGEDADVNVKDFDEPEEGDQDASFLDH
BO04259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2656-PA | 283 | CG2656-PA | 1..283 | 1..283 | 1482 | 100 | Plus |
CG10222-PB | 307 | CG10222-PB | 15..282 | 2..270 | 399 | 36.7 | Plus |
CG10222-PA | 307 | CG10222-PA | 15..282 | 2..270 | 399 | 36.7 | Plus |
CG3704-PA | 382 | CG3704-PA | 27..228 | 6..211 | 215 | 30.7 | Plus |