Clone Sequence Records
BO04260.3prime Sequence
386 bp (385 high quality bases) assembled on 2005-12-01
> BO04260.3prime
ATGGTCTAGAAAGCTTGCGCCGCAGCATCCTCCGGCATTGCAGGATTGGG
AGGGGGGCGGAATGCGCCCAATTCGTCGATTAGGCCTTAATCCACCTCCG
CGATAACCGCTACCGCCTCCGCCTCCGCCACCGCCTCCGCCGCCACCGCC
TCCGCCGCCACCACCACCGCCCCCTCCGCCCCAGCTACTACTTCCCCATC
CATTTCCTCGACGGGAGTTATCTCCGTTGCTATCATTTCCAGTGAATGGA
GACAGGAACGATGCAAGCAACTGTTTGACGGCGAACCATATACCCACGAA
TGTGTCCAAAACTCGTCTCAAGTCCCATGGACGTTTCTCCCACAGACGAC
CATTTTGATCGACGTACGCCATGTCGACTGATAACT
BO04260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 357 | CG1840-RA | 1..354 | 372..19 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..498 | 372..19 | 1770 | 100 | Minus |
CG1840-RB | 716 | CG1840-RB | 145..495 | 372..19 | 1715 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888965 | 268..19 | 1250 | 100 | Minus |
X | 23542271 | X | 11888572..11888657 | 353..268 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:34 has no hits.
BO04260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:12 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 16..372 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:04 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 16..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:44 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 8..372 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:36 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 8..372 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:36 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 354..372 | 100 | -> | Minus |
X | 11888572..11888656 | 269..353 | 100 | -> | Minus |
X | 11888716..11888974 | 8..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:44 Download gff for
BO04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 354..372 | 100 | -> | Minus |
arm_X | 11782605..11782689 | 269..353 | 100 | -> | Minus |
arm_X | 11782749..11783007 | 8..268 | 98 | | Minus |
BO04260.5prime Sequence
386 bp (385 high quality bases) assembled on 2005-12-01
> BO04260.5prime
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCGCAAGCTTTCTAGACC
BO04260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 357 | CG1840-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..498 | 17..370 | 1770 | 100 | Plus |
CG1840-RB | 716 | CG1840-RB | 145..495 | 17..370 | 1715 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888965 | 121..370 | 1250 | 100 | Plus |
X | 23542271 | X | 11888572..11888657 | 36..121 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:30:43 has no hits.
BO04260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:13 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:05 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:25 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 17..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:54 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 17..381 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:54 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 17..35 | 100 | -> | Plus |
X | 11888572..11888656 | 36..120 | 100 | -> | Plus |
X | 11888716..11888974 | 121..381 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:25 Download gff for
BO04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 17..35 | 100 | -> | Plus |
arm_X | 11782605..11782689 | 36..120 | 100 | -> | Plus |
arm_X | 11782749..11783007 | 121..381 | 98 | | Plus |
BO04260.complete Sequence
388 bp (388 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629701
> BO04260.complete
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCGCAAGCTTTCTAGACCAT
BO04260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 357 | CG1840-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG1840-RB | 354 | CG1840-PB | 1..351 | 17..370 | 1690 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..498 | 17..370 | 1770 | 100 | Plus |
CG1840-RB | 716 | CG1840-RB | 145..495 | 17..370 | 1690 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888965 | 121..370 | 1250 | 100 | Plus |
X | 23542271 | X | 11888572..11888657 | 36..121 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:46:53 has no hits.
BO04260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:54 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 1..357 | 17..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:23 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 139..501 | 17..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:43 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..498 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:54 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 139..501 | 17..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:26 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..498 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:26 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 17..35 | 100 | -> | Plus |
X | 11888572..11888656 | 36..120 | 100 | -> | Plus |
X | 11888716..11888965 | 121..372 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:43 Download gff for
BO04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 17..35 | 100 | -> | Plus |
arm_X | 11782605..11782689 | 36..120 | 100 | -> | Plus |
arm_X | 11782749..11782998 | 121..372 | 99 | | Plus |
BO04260.pep Sequence
Translation from 16 to 388
> BO04260.pep
MAYVDQNGRLWEKRPWDLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNG
DNSRRGNGWGSSSWGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRR
IGRIPPPSQSCNAGGCCGASFLDH
BO04260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 118 | CG1840-PA | 1..118 | 1..118 | 674 | 100 | Plus |
CG1840-PB | 117 | CG1840-PB | 1..117 | 1..118 | 658 | 99.2 | Plus |
SelG-PA | 110 | CG1844-PA | 1..110 | 1..118 | 389 | 63.6 | Plus |
caz-PD | 355 | CG3606-PD | 145..207 | 43..94 | 159 | 54 | Plus |
caz-PC | 384 | CG3606-PC | 174..236 | 43..94 | 159 | 54 | Plus |
caz-PD | 355 | CG3606-PD | 164..245 | 46..121 | 151 | 43.9 | Plus |