Clone BO04260 Report

Search the DGRC for BO04260

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1840-RA
Protein status:BO04260.pep: validated full length
Sequenced Size:388

Clone Sequence Records

BO04260.3prime Sequence

386 bp (385 high quality bases) assembled on 2005-12-01

> BO04260.3prime
ATGGTCTAGAAAGCTTGCGCCGCAGCATCCTCCGGCATTGCAGGATTGGG
AGGGGGGCGGAATGCGCCCAATTCGTCGATTAGGCCTTAATCCACCTCCG
CGATAACCGCTACCGCCTCCGCCTCCGCCACCGCCTCCGCCGCCACCGCC
TCCGCCGCCACCACCACCGCCCCCTCCGCCCCAGCTACTACTTCCCCATC
CATTTCCTCGACGGGAGTTATCTCCGTTGCTATCATTTCCAGTGAATGGA
GACAGGAACGATGCAAGCAACTGTTTGACGGCGAACCATATACCCACGAA
TGTGTCCAAAACTCGTCTCAAGTCCCATGGACGTTTCTCCCACAGACGAC
CATTTTGATCGACGTACGCCATGTCGACTGATAACT

BO04260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 357 CG1840-RA 1..354 372..19 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..498 372..19 1770 100 Minus
CG1840-RB 716 CG1840-RB 145..495 372..19 1715 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888965 268..19 1250 100 Minus
X 23542271 X 11888572..11888657 353..268 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:30:34 has no hits.

BO04260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:12 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 16..372 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:04 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 16..372 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:44 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 8..372 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:36 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 8..372 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:36 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 354..372 100 -> Minus
X 11888572..11888656 269..353 100 -> Minus
X 11888716..11888974 8..268 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:44 Download gff for BO04260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 354..372 100 -> Minus
arm_X 11782605..11782689 269..353 100 -> Minus
arm_X 11782749..11783007 8..268 98   Minus

BO04260.5prime Sequence

386 bp (385 high quality bases) assembled on 2005-12-01

> BO04260.5prime
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCGCAAGCTTTCTAGACC

BO04260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 357 CG1840-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..498 17..370 1770 100 Plus
CG1840-RB 716 CG1840-RB 145..495 17..370 1715 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888965 121..370 1250 100 Plus
X 23542271 X 11888572..11888657 36..121 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:30:43 has no hits.

BO04260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:13 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:05 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:25 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 17..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:54 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 17..381 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:54 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 17..35 100 -> Plus
X 11888572..11888656 36..120 100 -> Plus
X 11888716..11888974 121..381 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:25 Download gff for BO04260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 17..35 100 -> Plus
arm_X 11782605..11782689 36..120 100 -> Plus
arm_X 11782749..11783007 121..381 98   Plus

BO04260.complete Sequence

388 bp (388 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629701

> BO04260.complete
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCGCAAGCTTTCTAGACCAT

BO04260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 357 CG1840-PA 1..354 17..370 1770 100 Plus
CG1840-RB 354 CG1840-PB 1..351 17..370 1690 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..498 17..370 1770 100 Plus
CG1840-RB 716 CG1840-RB 145..495 17..370 1690 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888965 121..370 1250 100 Plus
X 23542271 X 11888572..11888657 36..121 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:46:53 has no hits.

BO04260.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:54 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 1..357 17..373 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:23 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 139..501 17..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:43 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..498 17..372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:54 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 139..501 17..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:26 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..498 17..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:26 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 17..35 100 -> Plus
X 11888572..11888656 36..120 100 -> Plus
X 11888716..11888965 121..372 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:43 Download gff for BO04260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 17..35 100 -> Plus
arm_X 11782605..11782689 36..120 100 -> Plus
arm_X 11782749..11782998 121..372 99   Plus

BO04260.pep Sequence

Translation from 16 to 388

> BO04260.pep
MAYVDQNGRLWEKRPWDLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNG
DNSRRGNGWGSSSWGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRR
IGRIPPPSQSCNAGGCCGASFLDH

BO04260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 118 CG1840-PA 1..118 1..118 674 100 Plus
CG1840-PB 117 CG1840-PB 1..117 1..118 658 99.2 Plus
SelG-PA 110 CG1844-PA 1..110 1..118 389 63.6 Plus
caz-PD 355 CG3606-PD 145..207 43..94 159 54 Plus
caz-PC 384 CG3606-PC 174..236 43..94 159 54 Plus
caz-PD 355 CG3606-PD 164..245 46..121 151 43.9 Plus