Clone BO04261 Report

Search the DGRC for BO04261

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG9248-RA
Protein status:BO04261.pep: validated full length
Sequenced Size:1516

Clone Sequence Records

BO04261.3prime Sequence

857 bp (785 high quality bases) assembled on 2005-12-01

> BO04261.3prime
ATGGTCTAGAAAGCTTGCTACCAGCGGTGTGGCGTACTTGCTATTCCAGT
CCCGCTCGAAAACATTCCGCAGATCGCTTCTTAAGGTATTAGTGGTCTCG
GTCTCGAAGGTTTCGCTTAGCACCAGTCCAATGCCAGCGGTGTCCGTGAA
GTAGTCTCCACTCCAGTTAGAAGTTCCGATGTAAGCCACTCGATCTGTAA
CCATGTACTTGTTGTGGTTGACACGGCCAAAGGGAATCTTCTCCTGGCTC
GAATCAGTCGGCACTATGAATCGACGAATTTGTATATCAATTTTGTCTTC
TTTGGATGCCAAGTCCTGCAGTGACCTGAGATACCGGTCCTCACTGGGAT
TCGAGTGCTTCCACCACGAAATAAGGAGCTTCACAGCCACGCCCCGTTCT
ACAGCCGCCTTTCGCAGAGCGTCGTCGATAAACGGCCAATAGTGGTGGTT
CTTCTCGTATATGATCAGCGGATAATAGTCCATAACCGCAATATTTACGT
AAGTTATGGCCGTGTTAATAGTGTTGAGGATGGCGTTCAGGTCGTCTGTT
CGGCCGGAGGGTGAAAGGGGAGGCGGTGAGCTAGATAGGAAGCCCTCTAT
GCTAGTATTTTTGTTTACACTCAGCTGCATGGGATGTTTCAAGTTGTAGC
TGGTCGCGTAACGCCAGTCCCAGTCGGGAATGCGAGAACTTTCACTGTTG
CCTAGGTACCAGTACTCTCCAAAGATCTTGGCCACATCATGGGTCAGTTC
TGGACAGTTCTGGACTAGCACGCCCATCTCCTTGACTTGGGTCAGTGCCC
GCCAGTCCATATTGGCGCTGCCCAGATAAAAGTGCTTGTTGTCCACCACC
CACAGCT

BO04261.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-PB 1485 CG9248-RB 644..1482 857..19 4195 100 Minus
CG9248-PA 1485 CG9248-RA 644..1482 857..19 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-RC 1926 CG9248-RC 749..1587 857..19 4195 100 Minus
CG9248-RA 1806 CG9248-RA 749..1587 857..19 4195 100 Minus
CG9248-RB 1757 CG9248-RB 700..1538 857..19 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21159726..21160564 857..19 4195 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:56:41 has no hits.

BO04261.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:14 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-PA 644..1485 15..857 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:06 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-PA 644..1485 15..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:13 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 715..1556 15..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:25 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 700..1541 15..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:25 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21159726..21160567 15..857 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:13 Download gff for BO04261.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21159726..21160567 15..857 99   Minus

BO04261.5prime Sequence

915 bp (842 high quality bases) assembled on 2005-12-01

> BO04261.5prime
GAAGTTATCAGTCGACATGCCGGAATACAAGAAGCTAGAGGACCAGGAGT
CAGATGTGGAGAACGCAAATAGAACCACCGTCCAGAACACTGCTACCGTT
CAGGACGCCGGGGAGGGACAGAGGCAGGCGGCTGGCCAGCAGGCGGGACA
AATGGTGACGGTGTCCTTGTTCATGCTTCTTTTCCTCGGCAGCTCCTACT
TCCAACCGCGACCACGACTGCATCAGTACAAGGGGGGCAGGGGCCATGGA
CTGCTGGAGAAGTTCGACTGCAACATACAACTGGTGGAATCCATACCCAT
TGGCCTAACATATCCTGACGGCAGTCCACGATTCCTAAGCACTTACGAAG
CTTGGCTGGAGTTATTGGAGAGCGCCACGACCTCACTAGACATAGCATCC
TTCTATTGGACTCTGAAGGCCGAGGATACGCCCGGGGTGTCGGACAACAG
CACTCGGCCGGGCGAGGACGTCTTCGCAAGACTCTTAGCCAACGGAAACG
GCGGTAGCAGGTCGCCCAGGATCAAAATTCGCATTGCCCAGAGCGAACCC
TCTAGTGGCACACCCAATTTAAACACAAAGTTGTTAGCTAGCGCTGGCGC
TGCCGAAGTTGTTAGCATCTCGTTTCCCAAGTACTTTGGCAGCGGAGTGC
TCCACACCAAGCTGTGGGTGGTGGACAACAAGCACTTTTATCTGGGCAGC
GCCAATATGGACTGGCGGGCACTGACCCAAGTCAAGGAGATGGGCGTGCT
AGTCCAGAACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAG
AGTACTGGTACCTAGGCAACAGTGAAAGTTCTCGCATTCCCGACTGGGAC
TGGCGTTACGCGACCAGCTACAACTTGAAACATCCCATGCAGCTGAGTGT
AAACAAAAATACTAA

BO04261.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-PB 1485 CG9248-RB 1..898 17..914 4490 100 Plus
CG9248-PA 1485 CG9248-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-RC 1926 CG9248-RC 103..1003 14..914 4505 100 Plus
CG9248-RA 1806 CG9248-RA 103..1003 14..914 4505 100 Plus
CG9248-RB 1757 CG9248-RB 54..954 14..914 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21159272..21159980 206..914 3545 100 Plus
2L 23513712 2L 21159006..21159197 14..205 960 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:03:26 has no hits.

BO04261.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:15 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:07 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:22 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 58..969 3..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:25 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 43..954 3..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:25 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21158998..21159197 6..205 98 -> Plus
2L 21159272..21159980 206..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:22 Download gff for BO04261.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21158998..21159197 6..205 98 -> Plus
arm_2L 21159272..21159980 206..915 99   Plus

BO04261.complete Sequence

1516 bp (1516 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629702

> BO04261.complete
GAAGTTATCAGTCGACATGCCGGAATACAAGAAGCTAGAGGACCAGGAGT
CAGATGTGGAGAACGCAAATAGAACCACCGTCCAGAACACTGCTACCGTT
CAGGACGCCGGGGAGGGACAGAGGCAGGCGGCTGGCCAGCAGGCGGGACA
AATGGTGACGGTGTCCTTGTTCATGCTTCTTTTCCTCGGCAGCTCCTACT
TCCAACCGCGACCACGACTGCATCAGTACAAGGGGGGCAGGGGCCATGGA
CTGCTGGAGAAGTTCGACTGCAACATACAACTGGTGGAATCCATACCCAT
TGGCCTAACATATCCTGACGGCAGTCCACGATTCCTAAGCACTTACGAAG
CTTGGCTGGAGTTATTGGAGAGCGCCACGACCTCACTAGACATAGCATCC
TTCTATTGGACTCTGAAGGCCGAGGATACGCCCGGGGTGTCGGACAACAG
CACTCGGCCGGGCGAGGACGTCTTCGCAAGACTCTTAGCCAACGGAAACG
GCGGTAGCAGGTCGCCCAGGATCAAAATTCGCATTGCCCAGAGCGAACCC
TCTAGTGGCACACCCAATTTAAACACAAAGTTGTTAGCTAGCGCTGGCGC
TGCCGAAGTTGTTAGCATCTCGTTTCCCAAGTACTTTGGCAGCGGAGTGC
TCCACACCAAGCTGTGGGTGGTGGACAACAAGCACTTTTATCTGGGCAGC
GCCAATATGGACTGGCGGGCACTGACCCAAGTCAAGGAGATGGGCGTGCT
AGTCCAGAACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAG
AGTACTGGTACCTAGGCAACAGTGAAAGTTCTCGCATTCCCGACTGGGAC
TGGCGTTACGCGACCAGCTACAACTTGAAACATCCCATGCAGCTGAGTGT
AAACAAAAATACTAGCATAGAGGGCTTCCTATCTAGCTCACCGCCTCCCC
TTTCACCCTCCGGCCGAACAGACGACCTGAACGCCATCCTCAACACTATT
AACACGGCCATAACTTACGTAAATATTGCGGTTATGGACTATTATCCGCT
GATCATATACGAGAAGAACCACCACTATTGGCCGTTTATCGACGACGCTC
TGCGAAAGGCGGCTGTAGAACGGGGCGTGGCTGTGAAGCTCCTTATTTCG
TGGTGGAAGCACTCGAATCCCAGTGAGGACCGGTATCTCAGGTCACTGCA
GGACTTGGCATCCAAAGAAGACAAAATTGATATACAAATTCGTCGATTCA
TAGTGCCGACTGATTCGAGCCAGGAGAAGATTCCCTTTGGCCGTGTCAAC
CACAACAAGTACATGGTTACAGATCGAGTGGCTTACATCGGAACTTCTAA
CTGGAGTGGAGACTACTTCACGGACACCGCTGGCATTGGACTGGTGCTAA
GCGAAACCTTCGAGACCGAGACCACTAATACCTTAAGAAGCGATCTGCGG
AATGTTTTCGAGCGGGACTGGAATAGCAAGTACGCCACACCGCTGGTAGC
AAGCTTTCTAGACCAT

BO04261.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-RC 1485 CG9248-PC 1..1482 17..1498 7410 100 Plus
CG9248-RA 1485 CG9248-PA 1..1482 17..1498 7410 100 Plus
CG9248-RB 1485 CG9248-PB 1..1482 17..1498 7410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-RC 1926 CG9248-RC 103..1587 14..1498 7425 100 Plus
CG9248-RA 1806 CG9248-RA 103..1587 14..1498 7425 100 Plus
CG9248-RB 1757 CG9248-RB 54..1538 14..1498 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21159272..21160564 206..1498 6465 100 Plus
2L 23513712 2L 21159006..21159197 14..205 960 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:12:55 has no hits.

BO04261.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:46 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 1..1485 17..1502 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:30 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 102..1597 6..1502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:05 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 72..1553 17..1500 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:46 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 102..1597 6..1502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:03 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 57..1538 17..1500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:03 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21159009..21159197 17..205 100 -> Plus
2L 21159272..21160564 206..1500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:05 Download gff for BO04261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21159009..21159197 17..205 100 -> Plus
arm_2L 21159272..21160564 206..1500 99   Plus

BO04261.pep Sequence

Translation from 16 to 1516

> BO04261.pep
MPEYKKLEDQESDVENANRTTVQNTATVQDAGEGQRQAAGQQAGQMVTVS
LFMLLFLGSSYFQPRPRLHQYKGGRGHGLLEKFDCNIQLVESIPIGLTYP
DGSPRFLSTYEAWLELLESATTSLDIASFYWTLKAEDTPGVSDNSTRPGE
DVFARLLANGNGGSRSPRIKIRIAQSEPSSGTPNLNTKLLASAGAAEVVS
ISFPKYFGSGVLHTKLWVVDNKHFYLGSANMDWRALTQVKEMGVLVQNCP
ELTHDVAKIFGEYWYLGNSESSRIPDWDWRYATSYNLKHPMQLSVNKNTS
IEGFLSSSPPPLSPSGRTDDLNAILNTINTAITYVNIAVMDYYPLIIYEK
NHHYWPFIDDALRKAAVERGVAVKLLISWWKHSNPSEDRYLRSLQDLASK
EDKIDIQIRRFIVPTDSSQEKIPFGRVNHNKYMVTDRVAYIGTSNWSGDY
FTDTAGIGLVLSETFETETTNTLRSDLRNVFERDWNSKYATPLVASFLDH

BO04261.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-PC 494 CG9248-PC 1..494 1..494 2602 100 Plus
CG9248-PA 494 CG9248-PA 1..494 1..494 2602 100 Plus
CG9248-PB 494 CG9248-PB 1..494 1..494 2602 100 Plus
CG43345-PC 493 CG43345-PC 42..487 33..493 1018 45.3 Plus
CG43345-PB 493 CG9243-PA 42..487 33..493 1018 45.3 Plus