Clone Sequence Records
BO04261.3prime Sequence
857 bp (785 high quality bases) assembled on 2005-12-01
> BO04261.3prime
ATGGTCTAGAAAGCTTGCTACCAGCGGTGTGGCGTACTTGCTATTCCAGT
CCCGCTCGAAAACATTCCGCAGATCGCTTCTTAAGGTATTAGTGGTCTCG
GTCTCGAAGGTTTCGCTTAGCACCAGTCCAATGCCAGCGGTGTCCGTGAA
GTAGTCTCCACTCCAGTTAGAAGTTCCGATGTAAGCCACTCGATCTGTAA
CCATGTACTTGTTGTGGTTGACACGGCCAAAGGGAATCTTCTCCTGGCTC
GAATCAGTCGGCACTATGAATCGACGAATTTGTATATCAATTTTGTCTTC
TTTGGATGCCAAGTCCTGCAGTGACCTGAGATACCGGTCCTCACTGGGAT
TCGAGTGCTTCCACCACGAAATAAGGAGCTTCACAGCCACGCCCCGTTCT
ACAGCCGCCTTTCGCAGAGCGTCGTCGATAAACGGCCAATAGTGGTGGTT
CTTCTCGTATATGATCAGCGGATAATAGTCCATAACCGCAATATTTACGT
AAGTTATGGCCGTGTTAATAGTGTTGAGGATGGCGTTCAGGTCGTCTGTT
CGGCCGGAGGGTGAAAGGGGAGGCGGTGAGCTAGATAGGAAGCCCTCTAT
GCTAGTATTTTTGTTTACACTCAGCTGCATGGGATGTTTCAAGTTGTAGC
TGGTCGCGTAACGCCAGTCCCAGTCGGGAATGCGAGAACTTTCACTGTTG
CCTAGGTACCAGTACTCTCCAAAGATCTTGGCCACATCATGGGTCAGTTC
TGGACAGTTCTGGACTAGCACGCCCATCTCCTTGACTTGGGTCAGTGCCC
GCCAGTCCATATTGGCGCTGCCCAGATAAAAGTGCTTGTTGTCCACCACC
CACAGCT
BO04261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-PB | 1485 | CG9248-RB | 644..1482 | 857..19 | 4195 | 100 | Minus |
CG9248-PA | 1485 | CG9248-RA | 644..1482 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-RC | 1926 | CG9248-RC | 749..1587 | 857..19 | 4195 | 100 | Minus |
CG9248-RA | 1806 | CG9248-RA | 749..1587 | 857..19 | 4195 | 100 | Minus |
CG9248-RB | 1757 | CG9248-RB | 700..1538 | 857..19 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21159726..21160564 | 857..19 | 4195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:56:41 has no hits.
BO04261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:14 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-PA | 644..1485 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:06 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-PA | 644..1485 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:13 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 715..1556 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:25 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 700..1541 | 15..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:25 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21159726..21160567 | 15..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:13 Download gff for
BO04261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21159726..21160567 | 15..857 | 99 | | Minus |
BO04261.5prime Sequence
915 bp (842 high quality bases) assembled on 2005-12-01
> BO04261.5prime
GAAGTTATCAGTCGACATGCCGGAATACAAGAAGCTAGAGGACCAGGAGT
CAGATGTGGAGAACGCAAATAGAACCACCGTCCAGAACACTGCTACCGTT
CAGGACGCCGGGGAGGGACAGAGGCAGGCGGCTGGCCAGCAGGCGGGACA
AATGGTGACGGTGTCCTTGTTCATGCTTCTTTTCCTCGGCAGCTCCTACT
TCCAACCGCGACCACGACTGCATCAGTACAAGGGGGGCAGGGGCCATGGA
CTGCTGGAGAAGTTCGACTGCAACATACAACTGGTGGAATCCATACCCAT
TGGCCTAACATATCCTGACGGCAGTCCACGATTCCTAAGCACTTACGAAG
CTTGGCTGGAGTTATTGGAGAGCGCCACGACCTCACTAGACATAGCATCC
TTCTATTGGACTCTGAAGGCCGAGGATACGCCCGGGGTGTCGGACAACAG
CACTCGGCCGGGCGAGGACGTCTTCGCAAGACTCTTAGCCAACGGAAACG
GCGGTAGCAGGTCGCCCAGGATCAAAATTCGCATTGCCCAGAGCGAACCC
TCTAGTGGCACACCCAATTTAAACACAAAGTTGTTAGCTAGCGCTGGCGC
TGCCGAAGTTGTTAGCATCTCGTTTCCCAAGTACTTTGGCAGCGGAGTGC
TCCACACCAAGCTGTGGGTGGTGGACAACAAGCACTTTTATCTGGGCAGC
GCCAATATGGACTGGCGGGCACTGACCCAAGTCAAGGAGATGGGCGTGCT
AGTCCAGAACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAG
AGTACTGGTACCTAGGCAACAGTGAAAGTTCTCGCATTCCCGACTGGGAC
TGGCGTTACGCGACCAGCTACAACTTGAAACATCCCATGCAGCTGAGTGT
AAACAAAAATACTAA
BO04261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-PB | 1485 | CG9248-RB | 1..898 | 17..914 | 4490 | 100 | Plus |
CG9248-PA | 1485 | CG9248-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-RC | 1926 | CG9248-RC | 103..1003 | 14..914 | 4505 | 100 | Plus |
CG9248-RA | 1806 | CG9248-RA | 103..1003 | 14..914 | 4505 | 100 | Plus |
CG9248-RB | 1757 | CG9248-RB | 54..954 | 14..914 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21159272..21159980 | 206..914 | 3545 | 100 | Plus |
2L | 23513712 | 2L | 21159006..21159197 | 14..205 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:03:26 has no hits.
BO04261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:15 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:07 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:22 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 58..969 | 3..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:25 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 43..954 | 3..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:25 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21158998..21159197 | 6..205 | 98 | -> | Plus |
2L | 21159272..21159980 | 206..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:22 Download gff for
BO04261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21158998..21159197 | 6..205 | 98 | -> | Plus |
arm_2L | 21159272..21159980 | 206..915 | 99 | | Plus |
BO04261.complete Sequence
1516 bp (1516 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629702
> BO04261.complete
GAAGTTATCAGTCGACATGCCGGAATACAAGAAGCTAGAGGACCAGGAGT
CAGATGTGGAGAACGCAAATAGAACCACCGTCCAGAACACTGCTACCGTT
CAGGACGCCGGGGAGGGACAGAGGCAGGCGGCTGGCCAGCAGGCGGGACA
AATGGTGACGGTGTCCTTGTTCATGCTTCTTTTCCTCGGCAGCTCCTACT
TCCAACCGCGACCACGACTGCATCAGTACAAGGGGGGCAGGGGCCATGGA
CTGCTGGAGAAGTTCGACTGCAACATACAACTGGTGGAATCCATACCCAT
TGGCCTAACATATCCTGACGGCAGTCCACGATTCCTAAGCACTTACGAAG
CTTGGCTGGAGTTATTGGAGAGCGCCACGACCTCACTAGACATAGCATCC
TTCTATTGGACTCTGAAGGCCGAGGATACGCCCGGGGTGTCGGACAACAG
CACTCGGCCGGGCGAGGACGTCTTCGCAAGACTCTTAGCCAACGGAAACG
GCGGTAGCAGGTCGCCCAGGATCAAAATTCGCATTGCCCAGAGCGAACCC
TCTAGTGGCACACCCAATTTAAACACAAAGTTGTTAGCTAGCGCTGGCGC
TGCCGAAGTTGTTAGCATCTCGTTTCCCAAGTACTTTGGCAGCGGAGTGC
TCCACACCAAGCTGTGGGTGGTGGACAACAAGCACTTTTATCTGGGCAGC
GCCAATATGGACTGGCGGGCACTGACCCAAGTCAAGGAGATGGGCGTGCT
AGTCCAGAACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAG
AGTACTGGTACCTAGGCAACAGTGAAAGTTCTCGCATTCCCGACTGGGAC
TGGCGTTACGCGACCAGCTACAACTTGAAACATCCCATGCAGCTGAGTGT
AAACAAAAATACTAGCATAGAGGGCTTCCTATCTAGCTCACCGCCTCCCC
TTTCACCCTCCGGCCGAACAGACGACCTGAACGCCATCCTCAACACTATT
AACACGGCCATAACTTACGTAAATATTGCGGTTATGGACTATTATCCGCT
GATCATATACGAGAAGAACCACCACTATTGGCCGTTTATCGACGACGCTC
TGCGAAAGGCGGCTGTAGAACGGGGCGTGGCTGTGAAGCTCCTTATTTCG
TGGTGGAAGCACTCGAATCCCAGTGAGGACCGGTATCTCAGGTCACTGCA
GGACTTGGCATCCAAAGAAGACAAAATTGATATACAAATTCGTCGATTCA
TAGTGCCGACTGATTCGAGCCAGGAGAAGATTCCCTTTGGCCGTGTCAAC
CACAACAAGTACATGGTTACAGATCGAGTGGCTTACATCGGAACTTCTAA
CTGGAGTGGAGACTACTTCACGGACACCGCTGGCATTGGACTGGTGCTAA
GCGAAACCTTCGAGACCGAGACCACTAATACCTTAAGAAGCGATCTGCGG
AATGTTTTCGAGCGGGACTGGAATAGCAAGTACGCCACACCGCTGGTAGC
AAGCTTTCTAGACCAT
BO04261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-RC | 1485 | CG9248-PC | 1..1482 | 17..1498 | 7410 | 100 | Plus |
CG9248-RA | 1485 | CG9248-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
CG9248-RB | 1485 | CG9248-PB | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-RC | 1926 | CG9248-RC | 103..1587 | 14..1498 | 7425 | 100 | Plus |
CG9248-RA | 1806 | CG9248-RA | 103..1587 | 14..1498 | 7425 | 100 | Plus |
CG9248-RB | 1757 | CG9248-RB | 54..1538 | 14..1498 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21159272..21160564 | 206..1498 | 6465 | 100 | Plus |
2L | 23513712 | 2L | 21159006..21159197 | 14..205 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:12:55 has no hits.
BO04261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:46 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RA | 1..1485 | 17..1502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:30 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RA | 102..1597 | 6..1502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:05 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 72..1553 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:46 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RA | 102..1597 | 6..1502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:03 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9248-RB | 57..1538 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:03 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21159009..21159197 | 17..205 | 100 | -> | Plus |
2L | 21159272..21160564 | 206..1500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:05 Download gff for
BO04261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21159009..21159197 | 17..205 | 100 | -> | Plus |
arm_2L | 21159272..21160564 | 206..1500 | 99 | | Plus |
BO04261.pep Sequence
Translation from 16 to 1516
> BO04261.pep
MPEYKKLEDQESDVENANRTTVQNTATVQDAGEGQRQAAGQQAGQMVTVS
LFMLLFLGSSYFQPRPRLHQYKGGRGHGLLEKFDCNIQLVESIPIGLTYP
DGSPRFLSTYEAWLELLESATTSLDIASFYWTLKAEDTPGVSDNSTRPGE
DVFARLLANGNGGSRSPRIKIRIAQSEPSSGTPNLNTKLLASAGAAEVVS
ISFPKYFGSGVLHTKLWVVDNKHFYLGSANMDWRALTQVKEMGVLVQNCP
ELTHDVAKIFGEYWYLGNSESSRIPDWDWRYATSYNLKHPMQLSVNKNTS
IEGFLSSSPPPLSPSGRTDDLNAILNTINTAITYVNIAVMDYYPLIIYEK
NHHYWPFIDDALRKAAVERGVAVKLLISWWKHSNPSEDRYLRSLQDLASK
EDKIDIQIRRFIVPTDSSQEKIPFGRVNHNKYMVTDRVAYIGTSNWSGDY
FTDTAGIGLVLSETFETETTNTLRSDLRNVFERDWNSKYATPLVASFLDH
BO04261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9248-PC | 494 | CG9248-PC | 1..494 | 1..494 | 2602 | 100 | Plus |
CG9248-PA | 494 | CG9248-PA | 1..494 | 1..494 | 2602 | 100 | Plus |
CG9248-PB | 494 | CG9248-PB | 1..494 | 1..494 | 2602 | 100 | Plus |
CG43345-PC | 493 | CG43345-PC | 42..487 | 33..493 | 1018 | 45.3 | Plus |
CG43345-PB | 493 | CG9243-PA | 42..487 | 33..493 | 1018 | 45.3 | Plus |