Clone BO04262 Report

Search the DGRC for BO04262

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptFie-RA
Protein status:BO04262.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO04262.3prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-01

> BO04262.3prime
ATGGTCTAGAAAGCTTGCACACTGTCCATCGGGAGACTCGGTTAGAATGT
GCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATAG
GGTATGGCTCCTGGAGCTGGACATGGTATGGCCACAGTGGCAATCTCTCG
AAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTATGCATCACATACC
ACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAAAGTAGGGC
ACTTGACCACCCAGCAATTGCACGATTTTTGTATCCCTCAGCATGAAGAC
CAGTGCCCCCAAACCAATCATTAATAGGAACTCCACAACCAGCCAGGGTA
TGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGCA
CTCAGGGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCTC
CGTGGCGACGGCCAATTGGGCAGCGGTTTGCAGGCGAAGATCGTTGTGAA
AGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGTCCAGC
TCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCAG
GAAAAGGGCGCAGTGGGAGATTAACAACTGGTAGATGCTCGTCAAGAGCG
CCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCAG
CTGCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGCT
GACCGTTGGCAGCAGCATGTCGACTGATAACT

BO04262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1079-PA 753 CG1079-RA 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..865 768..19 3750 100 Minus
Fie-RA 1600 CG1079-RA 273..1022 768..19 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 625..243 1915 100 Minus
3L 28110227 3L 3892846..3892993 768..621 725 99.3 Minus
3L 28110227 3L 3893978..3894114 242..106 685 100 Minus
3L 28110227 3L 3894169..3894255 105..19 435 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:03:33 has no hits.

BO04262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:16 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:09 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:25 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 15..779 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:48 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 15..779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:48 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3892837..3892989 625..779 97 -> Minus
3L 3893533..3893914 243..624 100 -> Minus
3L 3893978..3894114 106..242 100 -> Minus
3L 3894169..3894258 15..105 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:25 Download gff for BO04262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3892837..3892989 625..779 97 -> Minus
arm_3L 3893533..3893914 243..624 100 -> Minus
arm_3L 3893978..3894114 106..242 100 -> Minus
arm_3L 3894169..3894258 15..105 97   Minus

BO04262.5prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-01

> BO04262.5prime
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTGCAAGCTTTCTAGACC

BO04262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1079-PA 753 CG1079-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..865 17..766 3750 100 Plus
Fie-RA 1600 CG1079-RA 273..1022 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 160..542 1915 100 Plus
3L 28110227 3L 3892846..3892993 17..164 725 99.3 Plus
3L 28110227 3L 3893978..3894114 543..679 685 100 Plus
3L 28110227 3L 3894169..3894255 680..766 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:57:21 has no hits.

BO04262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:17 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:10 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:37 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 6..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:35 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 6..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:35 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3892842..3892989 14..160 98 -> Plus
3L 3893533..3893914 161..542 100 -> Plus
3L 3893978..3894114 543..679 100 -> Plus
3L 3894169..3894258 680..770 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:37 Download gff for BO04262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3892842..3892989 14..160 98 -> Plus
arm_3L 3893533..3893914 161..542 100 -> Plus
arm_3L 3893978..3894114 543..679 100 -> Plus
arm_3L 3894169..3894258 680..770 97   Plus

BO04262.complete Sequence

784 bp (784 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629703

> BO04262.complete
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTGCAAGCTTTCTAGACCAT

BO04262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 753 CG1079-PB 1..750 17..766 3750 100 Plus
Fie-RA 753 CG1079-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..865 17..766 3750 100 Plus
Fie-RA 1600 CG1079-RA 273..1022 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 160..542 1915 100 Plus
3L 28110227 3L 3892846..3892993 17..164 725 99.3 Plus
3L 28110227 3L 3893978..3894114 543..679 685 100 Plus
3L 28110227 3L 3894169..3894255 680..766 435 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:53:43 has no hits.

BO04262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:47 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:32 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 6..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:23 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 273..1022 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:47 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1025 6..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:13 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 273..1022 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:13 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3894169..3894255 680..768 97   Plus
3L 3892846..3892989 17..160 100 -> Plus
3L 3893533..3893914 161..542 100 -> Plus
3L 3893978..3894114 543..679 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:23 Download gff for BO04262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3894169..3894255 680..768 97   Plus
arm_3L 3892846..3892989 17..160 100 -> Plus
arm_3L 3893533..3893914 161..542 100 -> Plus
arm_3L 3893978..3894114 543..679 100 -> Plus

BO04262.pep Sequence

Translation from 16 to 784

> BO04262.pep
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
ASFLDH

BO04262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-PB 250 CG1079-PB 1..250 1..250 1324 100 Plus
Fie-PA 250 CG1079-PA 1..250 1..250 1324 100 Plus