Clone Sequence Records
BO04262.3prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-01
> BO04262.3prime
ATGGTCTAGAAAGCTTGCACACTGTCCATCGGGAGACTCGGTTAGAATGT
GCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATAG
GGTATGGCTCCTGGAGCTGGACATGGTATGGCCACAGTGGCAATCTCTCG
AAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTATGCATCACATACC
ACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAAAGTAGGGC
ACTTGACCACCCAGCAATTGCACGATTTTTGTATCCCTCAGCATGAAGAC
CAGTGCCCCCAAACCAATCATTAATAGGAACTCCACAACCAGCCAGGGTA
TGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGCA
CTCAGGGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCTC
CGTGGCGACGGCCAATTGGGCAGCGGTTTGCAGGCGAAGATCGTTGTGAA
AGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGTCCAGC
TCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCAG
GAAAAGGGCGCAGTGGGAGATTAACAACTGGTAGATGCTCGTCAAGAGCG
CCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCAG
CTGCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGCT
GACCGTTGGCAGCAGCATGTCGACTGATAACT
BO04262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1079-PA | 753 | CG1079-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..865 | 768..19 | 3750 | 100 | Minus |
Fie-RA | 1600 | CG1079-RA | 273..1022 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 625..243 | 1915 | 100 | Minus |
3L | 28110227 | 3L | 3892846..3892993 | 768..621 | 725 | 99.3 | Minus |
3L | 28110227 | 3L | 3893978..3894114 | 242..106 | 685 | 100 | Minus |
3L | 28110227 | 3L | 3894169..3894255 | 105..19 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:03:33 has no hits.
BO04262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:16 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:09 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:25 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 15..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:48 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 15..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:48 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3892837..3892989 | 625..779 | 97 | -> | Minus |
3L | 3893533..3893914 | 243..624 | 100 | -> | Minus |
3L | 3893978..3894114 | 106..242 | 100 | -> | Minus |
3L | 3894169..3894258 | 15..105 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:25 Download gff for
BO04262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3892837..3892989 | 625..779 | 97 | -> | Minus |
arm_3L | 3893533..3893914 | 243..624 | 100 | -> | Minus |
arm_3L | 3893978..3894114 | 106..242 | 100 | -> | Minus |
arm_3L | 3894169..3894258 | 15..105 | 97 | | Minus |
BO04262.5prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-01
> BO04262.5prime
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTGCAAGCTTTCTAGACC
BO04262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1079-PA | 753 | CG1079-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..865 | 17..766 | 3750 | 100 | Plus |
Fie-RA | 1600 | CG1079-RA | 273..1022 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 160..542 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 3892846..3892993 | 17..164 | 725 | 99.3 | Plus |
3L | 28110227 | 3L | 3893978..3894114 | 543..679 | 685 | 100 | Plus |
3L | 28110227 | 3L | 3894169..3894255 | 680..766 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:57:21 has no hits.
BO04262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:17 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:10 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:37 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:35 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 6..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:35 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3892842..3892989 | 14..160 | 98 | -> | Plus |
3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
3L | 3894169..3894258 | 680..770 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:37 Download gff for
BO04262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3892842..3892989 | 14..160 | 98 | -> | Plus |
arm_3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
arm_3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
arm_3L | 3894169..3894258 | 680..770 | 97 | | Plus |
BO04262.complete Sequence
784 bp (784 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629703
> BO04262.complete
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTGCAAGCTTTCTAGACCAT
BO04262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 753 | CG1079-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
Fie-RA | 753 | CG1079-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..865 | 17..766 | 3750 | 100 | Plus |
Fie-RA | 1600 | CG1079-RA | 273..1022 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 160..542 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 3892846..3892993 | 17..164 | 725 | 99.3 | Plus |
3L | 28110227 | 3L | 3893978..3894114 | 543..679 | 685 | 100 | Plus |
3L | 28110227 | 3L | 3894169..3894255 | 680..766 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:53:43 has no hits.
BO04262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:47 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:32 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:23 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 273..1022 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:47 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1025 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:13 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 273..1022 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:13 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3894169..3894255 | 680..768 | 97 | | Plus |
3L | 3892846..3892989 | 17..160 | 100 | -> | Plus |
3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:23 Download gff for
BO04262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3894169..3894255 | 680..768 | 97 | | Plus |
arm_3L | 3892846..3892989 | 17..160 | 100 | -> | Plus |
arm_3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
arm_3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
BO04262.pep Sequence
Translation from 16 to 784
> BO04262.pep
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
ASFLDH
BO04262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-PB | 250 | CG1079-PB | 1..250 | 1..250 | 1324 | 100 | Plus |
Fie-PA | 250 | CG1079-PA | 1..250 | 1..250 | 1324 | 100 | Plus |