Clone BO04263 Report

Search the DGRC for BO04263

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3630-RA
Protein status:BO04263.pep: validated full length
Sequenced Size:1147

Clone Sequence Records

BO04263.3prime Sequence

890 bp (803 high quality bases) assembled on 2005-12-01

> BO04263.3prime
ATGGTCTAGAAAGCTTGCAGCGGGCGTCGACTCTGGTTGGGATTGGGACT
GGTCTGGCGAGGACTCGCTGGCCGTTCCGGGACTGGGCGCCAGCTGCTCC
ACGCTGACGGTGCGTACAAACTCGGCGGTGGCTTCAATCACAATTGTGGG
TAAGTCATCAGCAGGTCCTGCCGGTGCAACTGCAGCGGGTGCTTCCTCCG
CCTGCGGTTCGCTGGTGGTTGGTGTGGTTTCTTCTGTGGATGGTGCTTCT
GTGACTATCACAGCCACGGGCGCCTGTTCGGTCACCTCTGGCTTGGCTGG
CTCGATCTCAACGGTACTCGAAGCAGGAGCTGTTGCCGGTGTGGGCTCTG
TAGACGGAGCTGGAACTGCTGCCATAGTGGACTCTGCCACAGGAGCAGGT
TCTGCAGAAGTTGTGGGCCCAGCCACAGGCGTGACTTCTGCAGCAGGCGC
AGGAACAGGTACAGGAGCCTTGGGTGCCGGCGACGCTGACTTCGACTTGG
CGGACTTGCCCACAGCCGGCGAGGGAGTCCTCGACTTCAGTTTTTGTTCG
TGAGCACTGCGATCCATCAGCACCGAGGTGGACTGCGGAGGCGCTGGACT
AGCCGCCCTCTTGATGTCTTCAATCTTGGCCTCCATCTCACTGCGTATTT
CCTTGATGGGCTTCAGCAGAAAGACGGGAACGTCATCGTCCCTCCGCTGG
TACAACATCTCGCCCTCGAAGTCTACCAACTTGTGTTTGCGGGCCCGCAG
CAGGATGCCCACCACCTTGTCGGATATGTAGTTATAGATATTAAAAAGTT
CGCCGAAAGGGATCACACGCATAGTGGGCTCGTCCTTGACGTCGTAGCCC
TCCGAATTGATGATCTGGCAGAGCTCCAGCATCTCCTTCA

BO04263.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-PA 1116 CG3630-RA 242..1113 890..19 4335 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-RD 1672 CG3630-RD 445..1316 890..19 4345 99.9 Minus
CG3630-RC 1786 CG3630-RC 559..1430 890..19 4345 99.9 Minus
CG3630-RB 1783 CG3630-RB 556..1427 890..19 4345 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2171155..2171925 789..19 3855 100 Minus
X 23542271 X 2170985..2171085 890..790 490 99 Minus
Blast to na_te.dros performed on 2015-02-09 18:32:47 has no hits.

BO04263.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:18 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-PA 243..1116 15..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:12 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-PA 243..1116 15..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:09 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-RB 557..1431 14..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:23 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-RB 557..1431 14..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:23 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2170986..2171085 790..889 99 -> Minus
X 2171155..2171929 14..789 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:09 Download gff for BO04263.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2065019..2065118 790..889 99 -> Minus
arm_X 2065188..2065962 14..789 99   Minus

BO04263.5prime Sequence

853 bp (707 high quality bases) assembled on 2005-12-01

> BO04263.5prime
GAAGTTATCAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGC
GCTTCGTGGTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAAC
CAGGCCACGCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGA
CGGACGCGCCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAA
AACCACTGGCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATC
CACGTGATGAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGG
CTACGACGTCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAAC
TTTTTAATATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTG
CGGGCCCGCAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCA
GCGGAGGGACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAA
TACGCAGTGAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGT
CCAGCGCCTCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGA
ACAAAAACTGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCA
AGTCGAAGTCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCG
CCTGCTGCAGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACC
TGCTCCTGTGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAG
AGCCCACACCGGCAACAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCA
GCC

BO04263.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-PA 1116 CG3630-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-RD 1672 CG3630-RD 203..1040 16..853 4190 100 Plus
CG3630-RC 1786 CG3630-RC 317..1154 16..853 4190 100 Plus
CG3630-RA 1948 CG3630-RA 479..1316 16..853 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2171155..2171649 359..853 2475 100 Plus
X 23542271 X 2170788..2171085 61..358 1490 100 Plus
X 23542271 X 2168188..2168234 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:32:56 has no hits.

BO04263.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:18 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:13 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:12 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 475..1316 9..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:25 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 475..1316 9..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:25 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2168184..2168233 9..61 94 -> Plus
X 2170789..2171085 62..358 100 -> Plus
X 2171155..2171649 359..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:12 Download gff for BO04263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2062217..2062266 9..61 94 -> Plus
arm_X 2064822..2065118 62..358 100 -> Plus
arm_X 2065188..2065682 359..853 100   Plus

BO04263.complete Sequence

1147 bp (1147 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629704

> BO04263.complete
GAAGTTATCAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGC
GCTTCGTGGTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAAC
CAGGCCACGCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGA
CGGACGCGCCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAA
AACCACTGGCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATC
CACGTGATGAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGG
CTACGACGTCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAAC
TTTTTAATATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTG
CGGGCCCGCAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCA
GCGGAGGGACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAA
TACGCAGTGAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGT
CCAGCGCCTCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGA
ACAAAAACTGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCA
AGTCGAAGTCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCG
CCTGCTGCAGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACC
TGCTCCTGTGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAG
AGCCCACACCGGCAACAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCA
GCCAAGCCAGAGGTGACCGAACAGGCGCCCGTGGCTGTGATAGTCACAGA
AGCACCATCCACAGAAGAAACCACACCAACCACCAGCGAACCGCAGGCGG
AGGAAGCACCCGCTGCAGTTGCACCGGCAGGACCTGCTGATGACTTACCC
ACAATTGTGATTGAAGCCACCGCCGAGTTTGTACGCACCGTCAGCGTGGA
GCAGCTGGCGCCCAGTCCCGGAACGGCCAGCGAGTCCTCGCCAGACCAGT
CCCAATCCCAACCAGAGTCGACGCCCGCTGCAAGCTTTCTAGACCAT

BO04263.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-RD 1116 CG3630-PD 1..1113 17..1129 5565 100 Plus
CG3630-RC 1116 CG3630-PC 1..1113 17..1129 5565 100 Plus
CG3630-RA 1116 CG3630-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-RD 1672 CG3630-RD 203..1316 16..1129 5570 100 Plus
CG3630-RC 1786 CG3630-RC 317..1430 16..1129 5570 100 Plus
CG3630-RA 1948 CG3630-RA 479..1592 16..1129 5570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2171155..2171925 359..1129 3855 100 Plus
X 23542271 X 2170788..2171085 61..358 1490 100 Plus
X 23542271 X 2168188..2168234 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:00:53 has no hits.

BO04263.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:48 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 17..1133 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:33 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 469..1590 9..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:40 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 480..1592 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:48 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 469..1590 9..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:49 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 480..1592 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:49 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
X 2168189..2168233 17..61 100 -> Plus
X 2170789..2171085 62..358 100 -> Plus
X 2171155..2171925 359..1131 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:40 Download gff for BO04263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2062222..2062266 17..61 100 -> Plus
arm_X 2064822..2065118 62..358 100 -> Plus
arm_X 2065188..2065958 359..1131 99   Plus

BO04263.pep Sequence

Translation from 16 to 1147

> BO04263.pep
MTDVSHELGALRFVVDSPLSSKVAMFNNQATQHKQSQLLNPFSQDGRAAS
PKPTFSKDQYGKPLAGSLTEMRGQKANIHVMKEMLELCQIINSEGYDVKD
EPTMRVIPFGELFNIYNYISDKVVGILLRARKHKLVDFEGEMLYQRRDDD
VPVFLLKPIKEIRSEMEAKIEDIKRAASPAPPQSTSVLMDRSAHEQKLKS
RTPSPAVGKSAKSKSASPAPKAPVPVPAPAAEVTPVAGPTTSAEPAPVAE
STMAAVPAPSTEPTPATAPASSTVEIEPAKPEVTEQAPVAVIVTEAPSTE
ETTPTTSEPQAEEAPAAVAPAGPADDLPTIVIEATAEFVRTVSVEQLAPS
PGTASESSPDQSQSQPESTPAASFLDH

BO04263.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-PD 371 CG3630-PD 1..371 1..371 1868 100 Plus
CG3630-PC 371 CG3630-PC 1..371 1..371 1868 100 Plus
CG3630-PA 371 CG3630-PA 1..371 1..371 1868 100 Plus
CG3630-PB 347 CG3630-PB 1..347 25..371 1752 100 Plus
CG2113-PB 179 CG2113-PB 6..179 16..190 367 41.2 Plus