Clone Sequence Records
BO04263.3prime Sequence
890 bp (803 high quality bases) assembled on 2005-12-01
> BO04263.3prime
ATGGTCTAGAAAGCTTGCAGCGGGCGTCGACTCTGGTTGGGATTGGGACT
GGTCTGGCGAGGACTCGCTGGCCGTTCCGGGACTGGGCGCCAGCTGCTCC
ACGCTGACGGTGCGTACAAACTCGGCGGTGGCTTCAATCACAATTGTGGG
TAAGTCATCAGCAGGTCCTGCCGGTGCAACTGCAGCGGGTGCTTCCTCCG
CCTGCGGTTCGCTGGTGGTTGGTGTGGTTTCTTCTGTGGATGGTGCTTCT
GTGACTATCACAGCCACGGGCGCCTGTTCGGTCACCTCTGGCTTGGCTGG
CTCGATCTCAACGGTACTCGAAGCAGGAGCTGTTGCCGGTGTGGGCTCTG
TAGACGGAGCTGGAACTGCTGCCATAGTGGACTCTGCCACAGGAGCAGGT
TCTGCAGAAGTTGTGGGCCCAGCCACAGGCGTGACTTCTGCAGCAGGCGC
AGGAACAGGTACAGGAGCCTTGGGTGCCGGCGACGCTGACTTCGACTTGG
CGGACTTGCCCACAGCCGGCGAGGGAGTCCTCGACTTCAGTTTTTGTTCG
TGAGCACTGCGATCCATCAGCACCGAGGTGGACTGCGGAGGCGCTGGACT
AGCCGCCCTCTTGATGTCTTCAATCTTGGCCTCCATCTCACTGCGTATTT
CCTTGATGGGCTTCAGCAGAAAGACGGGAACGTCATCGTCCCTCCGCTGG
TACAACATCTCGCCCTCGAAGTCTACCAACTTGTGTTTGCGGGCCCGCAG
CAGGATGCCCACCACCTTGTCGGATATGTAGTTATAGATATTAAAAAGTT
CGCCGAAAGGGATCACACGCATAGTGGGCTCGTCCTTGACGTCGTAGCCC
TCCGAATTGATGATCTGGCAGAGCTCCAGCATCTCCTTCA
BO04263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-PA | 1116 | CG3630-RA | 242..1113 | 890..19 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-RD | 1672 | CG3630-RD | 445..1316 | 890..19 | 4345 | 99.9 | Minus |
CG3630-RC | 1786 | CG3630-RC | 559..1430 | 890..19 | 4345 | 99.9 | Minus |
CG3630-RB | 1783 | CG3630-RB | 556..1427 | 890..19 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2171155..2171925 | 789..19 | 3855 | 100 | Minus |
X | 23542271 | X | 2170985..2171085 | 890..790 | 490 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:32:47 has no hits.
BO04263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:18 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-PA | 243..1116 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:12 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-PA | 243..1116 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:09 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RB | 557..1431 | 14..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:23 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RB | 557..1431 | 14..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:23 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2170986..2171085 | 790..889 | 99 | -> | Minus |
X | 2171155..2171929 | 14..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:09 Download gff for
BO04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2065019..2065118 | 790..889 | 99 | -> | Minus |
arm_X | 2065188..2065962 | 14..789 | 99 | | Minus |
BO04263.5prime Sequence
853 bp (707 high quality bases) assembled on 2005-12-01
> BO04263.5prime
GAAGTTATCAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGC
GCTTCGTGGTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAAC
CAGGCCACGCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGA
CGGACGCGCCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAA
AACCACTGGCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATC
CACGTGATGAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGG
CTACGACGTCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAAC
TTTTTAATATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTG
CGGGCCCGCAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCA
GCGGAGGGACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAA
TACGCAGTGAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGT
CCAGCGCCTCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGA
ACAAAAACTGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCA
AGTCGAAGTCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCG
CCTGCTGCAGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACC
TGCTCCTGTGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAG
AGCCCACACCGGCAACAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCA
GCC
BO04263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-PA | 1116 | CG3630-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-RD | 1672 | CG3630-RD | 203..1040 | 16..853 | 4190 | 100 | Plus |
CG3630-RC | 1786 | CG3630-RC | 317..1154 | 16..853 | 4190 | 100 | Plus |
CG3630-RA | 1948 | CG3630-RA | 479..1316 | 16..853 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2171155..2171649 | 359..853 | 2475 | 100 | Plus |
X | 23542271 | X | 2170788..2171085 | 61..358 | 1490 | 100 | Plus |
X | 23542271 | X | 2168188..2168234 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:32:56 has no hits.
BO04263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:18 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:13 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:12 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 475..1316 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:25 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 475..1316 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:25 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2168184..2168233 | 9..61 | 94 | -> | Plus |
X | 2170789..2171085 | 62..358 | 100 | -> | Plus |
X | 2171155..2171649 | 359..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:12 Download gff for
BO04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2062217..2062266 | 9..61 | 94 | -> | Plus |
arm_X | 2064822..2065118 | 62..358 | 100 | -> | Plus |
arm_X | 2065188..2065682 | 359..853 | 100 | | Plus |
BO04263.complete Sequence
1147 bp (1147 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629704
> BO04263.complete
GAAGTTATCAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGC
GCTTCGTGGTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAAC
CAGGCCACGCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGA
CGGACGCGCCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAA
AACCACTGGCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATC
CACGTGATGAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGG
CTACGACGTCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAAC
TTTTTAATATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTG
CGGGCCCGCAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCA
GCGGAGGGACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAA
TACGCAGTGAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGT
CCAGCGCCTCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGA
ACAAAAACTGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCA
AGTCGAAGTCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCG
CCTGCTGCAGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACC
TGCTCCTGTGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAG
AGCCCACACCGGCAACAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCA
GCCAAGCCAGAGGTGACCGAACAGGCGCCCGTGGCTGTGATAGTCACAGA
AGCACCATCCACAGAAGAAACCACACCAACCACCAGCGAACCGCAGGCGG
AGGAAGCACCCGCTGCAGTTGCACCGGCAGGACCTGCTGATGACTTACCC
ACAATTGTGATTGAAGCCACCGCCGAGTTTGTACGCACCGTCAGCGTGGA
GCAGCTGGCGCCCAGTCCCGGAACGGCCAGCGAGTCCTCGCCAGACCAGT
CCCAATCCCAACCAGAGTCGACGCCCGCTGCAAGCTTTCTAGACCAT
BO04263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-RD | 1116 | CG3630-PD | 1..1113 | 17..1129 | 5565 | 100 | Plus |
CG3630-RC | 1116 | CG3630-PC | 1..1113 | 17..1129 | 5565 | 100 | Plus |
CG3630-RA | 1116 | CG3630-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-RD | 1672 | CG3630-RD | 203..1316 | 16..1129 | 5570 | 100 | Plus |
CG3630-RC | 1786 | CG3630-RC | 317..1430 | 16..1129 | 5570 | 100 | Plus |
CG3630-RA | 1948 | CG3630-RA | 479..1592 | 16..1129 | 5570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2171155..2171925 | 359..1129 | 3855 | 100 | Plus |
X | 23542271 | X | 2170788..2171085 | 61..358 | 1490 | 100 | Plus |
X | 23542271 | X | 2168188..2168234 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:00:53 has no hits.
BO04263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:48 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 1..1116 | 17..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:33 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 469..1590 | 9..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:40 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 480..1592 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:48 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 469..1590 | 9..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:49 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3630-RA | 480..1592 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:49 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2168189..2168233 | 17..61 | 100 | -> | Plus |
X | 2170789..2171085 | 62..358 | 100 | -> | Plus |
X | 2171155..2171925 | 359..1131 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:40 Download gff for
BO04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2062222..2062266 | 17..61 | 100 | -> | Plus |
arm_X | 2064822..2065118 | 62..358 | 100 | -> | Plus |
arm_X | 2065188..2065958 | 359..1131 | 99 | | Plus |
BO04263.pep Sequence
Translation from 16 to 1147
> BO04263.pep
MTDVSHELGALRFVVDSPLSSKVAMFNNQATQHKQSQLLNPFSQDGRAAS
PKPTFSKDQYGKPLAGSLTEMRGQKANIHVMKEMLELCQIINSEGYDVKD
EPTMRVIPFGELFNIYNYISDKVVGILLRARKHKLVDFEGEMLYQRRDDD
VPVFLLKPIKEIRSEMEAKIEDIKRAASPAPPQSTSVLMDRSAHEQKLKS
RTPSPAVGKSAKSKSASPAPKAPVPVPAPAAEVTPVAGPTTSAEPAPVAE
STMAAVPAPSTEPTPATAPASSTVEIEPAKPEVTEQAPVAVIVTEAPSTE
ETTPTTSEPQAEEAPAAVAPAGPADDLPTIVIEATAEFVRTVSVEQLAPS
PGTASESSPDQSQSQPESTPAASFLDH
BO04263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3630-PD | 371 | CG3630-PD | 1..371 | 1..371 | 1868 | 100 | Plus |
CG3630-PC | 371 | CG3630-PC | 1..371 | 1..371 | 1868 | 100 | Plus |
CG3630-PA | 371 | CG3630-PA | 1..371 | 1..371 | 1868 | 100 | Plus |
CG3630-PB | 347 | CG3630-PB | 1..347 | 25..371 | 1752 | 100 | Plus |
CG2113-PB | 179 | CG2113-PB | 6..179 | 16..190 | 367 | 41.2 | Plus |