Clone Sequence Records
BO04265.3prime Sequence
518 bp (517 high quality bases) assembled on 2005-12-01
> BO04265.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCTCGCACCACTCGTTCTCCTTGCGCA
CCTGCTCCTCCTCGGCGGGCGAAAAGTCCTTCTTAATGTTGAAGGTCTTG
CGTATTTCCTCGGGAGTCTTTCCCTTAATCATGTTTGCAACAGTCTTGCA
GGTGAGCTCCAGAAGGCCCTTAATGTCCAGATAGTTCGCTGCCAATATCA
GCTCAAACAGTGTGCCCTGGTCGACTTTTAGGAAATCTGCATCCCATGAG
ATAATGTCGTCTGTGCGCTTCTCCTTGCTCTCATCATCCTCCGTTGGCTG
GGGGTCGTCCTTGTGGTAGTGAGCCCAGGTAAGCACCTTGCGAAGAATCG
TCGAATTCACATTGGGCAACGGCACAATGGCATTCTCATCGTCCTCCATG
CCGCAGTCCTCCAGCATGGTCTTGATAGTGCCGGAGCACTTGGCGATCTG
GATATCCGTGTCAAAGATCTCCTCATCCGAAGATTGCAACTTGATGCTGG
GCATGTCGACTGATAACT
BO04265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16983-PE | 489 | skpA-RE | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PF | 489 | skpA-RF | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PC | 489 | skpA-RC | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PB | 489 | skpA-RB | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PG | 489 | skpA-RG | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PD | 489 | skpA-RD | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PA | 489 | skpA-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
CG16983-PH | 489 | skpA-RH | 1..486 | 504..19 | 2430 | 100 | Minus |
CG8881-PA | 486 | skpB-RA | 439..479 | 63..23 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpA-RI | 826 | CG16983-RI | 37..522 | 504..19 | 2430 | 100 | Minus |
SkpA-RH | 1544 | CG16983-RH | 755..1240 | 504..19 | 2430 | 100 | Minus |
SkpA-RA | 1087 | CG16983-RA | 298..783 | 504..19 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 657110..657595 | 504..19 | 2430 | 100 | Minus |
2R | 25286936 | 2R | 12139446..12139797 | 23..374 | 440 | 75 | Plus |
X | 23542271 | X | 19812810..19813228 | 501..86 | 260 | 71.4 | Minus |
X | 23542271 | X | 19816453..19816565 | 198..86 | 250 | 81.4 | Minus |
X | 23542271 | X | 19816147..19816292 | 501..356 | 235 | 77.4 | Minus |
2L | 23513712 | 2L | 17581473..17581534 | 501..440 | 220 | 90.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:31:00 has no hits.
BO04265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:21 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16983-PE | 1..489 | 15..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:17 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16983-PE | 1..489 | 15..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:27 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RD | 683..1174 | 13..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:28 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpA-RA | 298..789 | 13..504 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:28 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 657110..657601 | 13..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:27 Download gff for
BO04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 551143..551634 | 13..504 | 99 | | Minus |
BO04265.5prime Sequence
518 bp (517 high quality bases) assembled on 2005-11-29
> BO04265.5prime
GAAGTTATCAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGG
AGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAG
ACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCC
GTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTC
ACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAG
AAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGA
CCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTA
AGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGA
AAGACTCCCGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTC
GCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGA
AGGCAAGCTTTCTAGACC
BO04265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16983-PE | 489 | skpA-RE | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PF | 489 | skpA-RF | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PC | 489 | skpA-RC | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PB | 489 | skpA-RB | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PG | 489 | skpA-RG | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PD | 489 | skpA-RD | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PA | 489 | skpA-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PH | 489 | skpA-RH | 1..486 | 17..502 | 2430 | 100 | Plus |
CG8881-PA | 486 | skpB-RA | 439..479 | 458..498 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpA-RI | 826 | CG16983-RI | 37..522 | 17..502 | 2430 | 100 | Plus |
SkpA-RH | 1544 | CG16983-RH | 755..1240 | 17..502 | 2430 | 100 | Plus |
SkpA-RA | 1087 | CG16983-RA | 298..783 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 657110..657595 | 17..502 | 2430 | 100 | Plus |
2R | 25286936 | 2R | 12139446..12139797 | 498..147 | 440 | 75 | Minus |
X | 23542271 | X | 19812810..19813228 | 20..435 | 260 | 71.4 | Plus |
X | 23542271 | X | 19816453..19816565 | 323..435 | 250 | 81.4 | Plus |
X | 23542271 | X | 19816147..19816292 | 20..165 | 235 | 77.4 | Plus |
2L | 23513712 | 2L | 17581473..17581534 | 20..81 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:03:40 has no hits.
BO04265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:22 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16983-PE | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:18 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16983-PE | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:28 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RD | 683..1174 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:07 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpA-RA | 298..789 | 17..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:07 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 657110..657601 | 17..508 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:28 Download gff for
BO04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 551143..551634 | 17..508 | 99 | | Plus |
BO04265.complete Sequence
520 bp (520 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629705
> BO04265.complete
GAAGTTATCAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGG
AGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAG
ACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCC
GTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTC
ACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAG
AAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGA
CCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTA
AGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGA
AAGACTCCCGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTC
GCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGA
AGGCAAGCTTTCTAGACCAT
BO04265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpA-RI | 489 | CG16983-PI | 1..486 | 17..502 | 2430 | 100 | Plus |
SkpA-RH | 489 | CG16983-PH | 1..486 | 17..502 | 2430 | 100 | Plus |
SkpA-RA | 489 | CG16983-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpA-RI | 826 | CG16983-RI | 37..522 | 17..502 | 2430 | 100 | Plus |
SkpA-RH | 1544 | CG16983-RH | 755..1240 | 17..502 | 2430 | 100 | Plus |
SkpA-RA | 1087 | CG16983-RA | 298..783 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 657110..657595 | 17..502 | 2430 | 100 | Plus |
2R | 25286936 | 2R | 12139446..12139797 | 498..147 | 440 | 75 | Minus |
X | 23542271 | X | 19812810..19813228 | 20..435 | 260 | 71.4 | Plus |
X | 23542271 | X | 19816453..19816565 | 323..435 | 250 | 81.4 | Plus |
X | 23542271 | X | 19816147..19816292 | 20..165 | 235 | 77.4 | Plus |
2L | 23513712 | 2L | 17581473..17581534 | 20..81 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:39 has no hits.
BO04265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:53 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RC | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:51 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RF | 119..610 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:36 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RD | 683..1168 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:53 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpA-RF | 119..610 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:15 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpA-RA | 298..783 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:15 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 657110..657595 | 17..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:36 Download gff for
BO04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 551143..551628 | 17..504 | 99 | | Plus |
BO04265.pep Sequence
Translation from 16 to 520
> BO04265.pep
MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVN
STILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLF
ELILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEE
QVRKENEWCEEKASFLDH
BO04265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PG | 162 | CG16983-PG | 1..162 | 1..162 | 853 | 100 | Plus |