Clone BO04265 Report

Search the DGRC for BO04265

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptskpA-RC
Protein status:BO04265.pep: validated full length
Sequenced Size:520

Clone Sequence Records

BO04265.3prime Sequence

518 bp (517 high quality bases) assembled on 2005-12-01

> BO04265.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCTCGCACCACTCGTTCTCCTTGCGCA
CCTGCTCCTCCTCGGCGGGCGAAAAGTCCTTCTTAATGTTGAAGGTCTTG
CGTATTTCCTCGGGAGTCTTTCCCTTAATCATGTTTGCAACAGTCTTGCA
GGTGAGCTCCAGAAGGCCCTTAATGTCCAGATAGTTCGCTGCCAATATCA
GCTCAAACAGTGTGCCCTGGTCGACTTTTAGGAAATCTGCATCCCATGAG
ATAATGTCGTCTGTGCGCTTCTCCTTGCTCTCATCATCCTCCGTTGGCTG
GGGGTCGTCCTTGTGGTAGTGAGCCCAGGTAAGCACCTTGCGAAGAATCG
TCGAATTCACATTGGGCAACGGCACAATGGCATTCTCATCGTCCTCCATG
CCGCAGTCCTCCAGCATGGTCTTGATAGTGCCGGAGCACTTGGCGATCTG
GATATCCGTGTCAAAGATCTCCTCATCCGAAGATTGCAACTTGATGCTGG
GCATGTCGACTGATAACT

BO04265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG16983-PE 489 skpA-RE 1..486 504..19 2430 100 Minus
CG16983-PF 489 skpA-RF 1..486 504..19 2430 100 Minus
CG16983-PC 489 skpA-RC 1..486 504..19 2430 100 Minus
CG16983-PB 489 skpA-RB 1..486 504..19 2430 100 Minus
CG16983-PG 489 skpA-RG 1..486 504..19 2430 100 Minus
CG16983-PD 489 skpA-RD 1..486 504..19 2430 100 Minus
CG16983-PA 489 skpA-RA 1..486 504..19 2430 100 Minus
CG16983-PH 489 skpA-RH 1..486 504..19 2430 100 Minus
CG8881-PA 486 skpB-RA 439..479 63..23 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
SkpA-RI 826 CG16983-RI 37..522 504..19 2430 100 Minus
SkpA-RH 1544 CG16983-RH 755..1240 504..19 2430 100 Minus
SkpA-RA 1087 CG16983-RA 298..783 504..19 2430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 657110..657595 504..19 2430 100 Minus
2R 25286936 2R 12139446..12139797 23..374 440 75 Plus
X 23542271 X 19812810..19813228 501..86 260 71.4 Minus
X 23542271 X 19816453..19816565 198..86 250 81.4 Minus
X 23542271 X 19816147..19816292 501..356 235 77.4 Minus
2L 23513712 2L 17581473..17581534 501..440 220 90.3 Minus
Blast to na_te.dros performed on 2015-02-13 05:31:00 has no hits.

BO04265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:21 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16983-PE 1..489 15..504 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:17 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16983-PE 1..489 15..504 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:27 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
skpA-RD 683..1174 13..504 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:28 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
SkpA-RA 298..789 13..504 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:28 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
X 657110..657601 13..504 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:27 Download gff for BO04265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 551143..551634 13..504 99   Minus

BO04265.5prime Sequence

518 bp (517 high quality bases) assembled on 2005-11-29

> BO04265.5prime
GAAGTTATCAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGG
AGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAG
ACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCC
GTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTC
ACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAG
AAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGA
CCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTA
AGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGA
AAGACTCCCGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTC
GCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGA
AGGCAAGCTTTCTAGACC

BO04265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16983-PE 489 skpA-RE 1..486 17..502 2430 100 Plus
CG16983-PF 489 skpA-RF 1..486 17..502 2430 100 Plus
CG16983-PC 489 skpA-RC 1..486 17..502 2430 100 Plus
CG16983-PB 489 skpA-RB 1..486 17..502 2430 100 Plus
CG16983-PG 489 skpA-RG 1..486 17..502 2430 100 Plus
CG16983-PD 489 skpA-RD 1..486 17..502 2430 100 Plus
CG16983-PA 489 skpA-RA 1..486 17..502 2430 100 Plus
CG16983-PH 489 skpA-RH 1..486 17..502 2430 100 Plus
CG8881-PA 486 skpB-RA 439..479 458..498 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
SkpA-RI 826 CG16983-RI 37..522 17..502 2430 100 Plus
SkpA-RH 1544 CG16983-RH 755..1240 17..502 2430 100 Plus
SkpA-RA 1087 CG16983-RA 298..783 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 657110..657595 17..502 2430 100 Plus
2R 25286936 2R 12139446..12139797 498..147 440 75 Minus
X 23542271 X 19812810..19813228 20..435 260 71.4 Plus
X 23542271 X 19816453..19816565 323..435 250 81.4 Plus
X 23542271 X 19816147..19816292 20..165 235 77.4 Plus
2L 23513712 2L 17581473..17581534 20..81 220 90.3 Plus
Blast to na_te.dros performed on 2015-02-12 01:03:40 has no hits.

BO04265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:22 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16983-PE 1..489 17..506 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:18 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16983-PE 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:28 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
skpA-RD 683..1174 17..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:07 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
SkpA-RA 298..789 17..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:07 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
X 657110..657601 17..508 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:28 Download gff for BO04265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 551143..551634 17..508 99   Plus

BO04265.complete Sequence

520 bp (520 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629705

> BO04265.complete
GAAGTTATCAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGG
AGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAG
ACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCC
GTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTC
ACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAG
AAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGA
CCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTA
AGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGA
AAGACTCCCGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTC
GCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGA
AGGCAAGCTTTCTAGACCAT

BO04265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
SkpA-RI 489 CG16983-PI 1..486 17..502 2430 100 Plus
SkpA-RH 489 CG16983-PH 1..486 17..502 2430 100 Plus
SkpA-RA 489 CG16983-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
SkpA-RI 826 CG16983-RI 37..522 17..502 2430 100 Plus
SkpA-RH 1544 CG16983-RH 755..1240 17..502 2430 100 Plus
SkpA-RA 1087 CG16983-RA 298..783 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 657110..657595 17..502 2430 100 Plus
2R 25286936 2R 12139446..12139797 498..147 440 75 Minus
X 23542271 X 19812810..19813228 20..435 260 71.4 Plus
X 23542271 X 19816453..19816565 323..435 250 81.4 Plus
X 23542271 X 19816147..19816292 20..165 235 77.4 Plus
2L 23513712 2L 17581473..17581534 20..81 220 90.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:09:39 has no hits.

BO04265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:53 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
skpA-RC 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:51 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
skpA-RF 119..610 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:36 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
skpA-RD 683..1168 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:53 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
skpA-RF 119..610 17..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:15 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
SkpA-RA 298..783 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:15 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
X 657110..657595 17..504 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:36 Download gff for BO04265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 551143..551628 17..504 99   Plus

BO04265.pep Sequence

Translation from 16 to 520

> BO04265.pep
MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVN
STILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLF
ELILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEE
QVRKENEWCEEKASFLDH

BO04265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
SkpA-PI 162 CG16983-PI 1..162 1..162 853 100 Plus
SkpA-PH 162 CG16983-PH 1..162 1..162 853 100 Plus
SkpA-PA 162 CG16983-PA 1..162 1..162 853 100 Plus
SkpA-PD 162 CG16983-PD 1..162 1..162 853 100 Plus
SkpA-PG 162 CG16983-PG 1..162 1..162 853 100 Plus