Clone Sequence Records
BO04266.3prime Sequence
884 bp (832 high quality bases) assembled on 2005-12-01
> BO04266.3prime
ATGGTCTAGAAAGCTTGCATACCAGTCACTAAACCGGGCAATCGTCCGGC
TCCATTTGTCCATCCGGTTGGCAATGGTTTCGTACTCCTTGGGACGCGGT
TCAAAGACTCGCGCCACTTTCCGGAAACGTTTGAGATCGTTCACATCGCG
CCAGATTCCGAGGTTGATGCCCGCCATGAACGTGGCTCCCATGATGCTGC
TCTCCGCATTGTCCGCCCGCTCCACCCGCAGTCGGCTGAGATCCGCAAGG
AATTGGCAGACGAAGTCATTGCGGGAGACGCCGCCATCAACCCTAATCAT
ATGAAGCTTCTGAGAGGTCTCCTTCTCAGCGGCCTCGATCAGCTGCACCA
GACGAAATACTATGCTCTCGAGCAGAGCCCGCACCATGTGGGCTTTGGTG
GTGGACGGAGTGAGGCCAATAAAGCCACTTGCTGACCGATAATCGTTCAC
CGGGGGCCCCAGGCCACTGAAGGCCGGCATGAAGAACACATCGTTCGTAT
CTGGAACGGACTGTGCAATATCTGAGGTGTTCGCTGGACTATCGAAGAGC
TCGCACGATTGCGCCCAAGTGACCACGGTGCCAAAGTCATGGGATGCTCC
CTCAATGCAGTAGACAGCTCCCTGCTGCCTGGTTGGTTTCTTGAACTGCC
AGGCCACCAATGGATACATGCCAGAGATGACAGCTTGGCAACGATCGCCT
GTTACCAGATTAAGGAACGCACCAGTACCCATTGTGACCTTGACGTCGTT
CTTCTGGAAACACTGCGAGCCCCAAATGGCTGCTGTTTGGTCACTTAAAG
AGGCAGCAATGGGTATCTCTGTGTTGGCCCAATCCGGACCGAAGGCAGTA
GGATGCACATGGCCAAAGCCCTTGTAGCCGTTGT
BO04266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-PB | 1221 | CG1271-RB | 353..1218 | 884..19 | 4305 | 99.8 | Minus |
CG1271-PA | 1671 | CG1271-RA | 803..1668 | 884..19 | 4305 | 99.8 | Minus |
CG1271-PD | 1620 | CG1271-RD | 752..1617 | 884..19 | 4305 | 99.8 | Minus |
CG1271-PC | 1155 | CG1271-RC | 353..945 | 884..292 | 2940 | 99.8 | Minus |
CG1271-PC | 1155 | CG1271-RC | 1000..1155 | 296..141 | 780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-RD | 1725 | CG1271-RD | 767..1632 | 884..19 | 4315 | 99.9 | Minus |
CG1271-RA | 1776 | CG1271-RA | 818..1683 | 884..19 | 4315 | 99.9 | Minus |
CG1271-RB | 1998 | CG1271-RB | 1040..1905 | 884..19 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3053823..3054250 | 884..457 | 2125 | 99.8 | Minus |
3L | 28110227 | 3L | 3054536..3054813 | 296..19 | 1390 | 100 | Minus |
3L | 28110227 | 3L | 3054316..3054481 | 457..292 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:16:15 has no hits.
BO04266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:23 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-PD | 752..1620 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:19 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-PD | 752..1620 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:36 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RB | 1040..1911 | 11..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:33 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RB | 1040..1911 | 11..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:33 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3053823..3054250 | 457..884 | 99 | -> | Minus |
3L | 3054317..3054480 | 293..456 | 100 | -> | Minus |
3L | 3054540..3054819 | 11..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:36 Download gff for
BO04266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3053823..3054250 | 457..884 | 99 | -> | Minus |
arm_3L | 3054317..3054480 | 293..456 | 100 | -> | Minus |
arm_3L | 3054540..3054819 | 11..292 | 98 | | Minus |
BO04266.5prime Sequence
878 bp (808 high quality bases) assembled on 2005-12-01
> BO04266.5prime
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCAT
CCTACTGCCTTCGGTCCGGATGGGGCCA
BO04266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-PA | 1671 | CG1271-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
CG1271-PD | 1620 | CG1271-RD | 1..538 | 17..554 | 2690 | 100 | Plus |
CG1271-PB | 1221 | CG1271-RB | 1..412 | 467..878 | 2035 | 99.7 | Plus |
CG1271-PC | 1155 | CG1271-RC | 1..412 | 467..878 | 2035 | 99.7 | Plus |
CG1271-PD | 1620 | CG1271-RD | 535..811 | 602..878 | 1360 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-RA | 1776 | CG1271-RA | 14..877 | 15..878 | 4305 | 99.9 | Plus |
CG1271-RC | 2057 | CG1271-RC | 421..1099 | 200..878 | 3380 | 99.9 | Plus |
CG1271-RB | 1998 | CG1271-RB | 421..1099 | 200..878 | 3380 | 99.9 | Plus |
CG1271-RC | 2057 | CG1271-RC | 159..345 | 15..201 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3053241..3053740 | 294..793 | 2500 | 100 | Plus |
3L | 28110227 | 3L | 3052672..3052858 | 15..201 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3052934..3053027 | 200..293 | 470 | 100 | Plus |
3L | 28110227 | 3L | 3053798..3053882 | 794..878 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:17:29 has no hits.
BO04266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:24 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:21 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:43 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..876 | 15..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:05 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..876 | 15..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:05 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3052672..3052856 | 15..199 | 100 | -> | Plus |
3L | 3052934..3053027 | 200..293 | 100 | -> | Plus |
3L | 3053241..3053740 | 294..793 | 100 | -> | Plus |
3L | 3053798..3053881 | 794..877 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:43 Download gff for
BO04266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3052672..3052856 | 15..199 | 100 | -> | Plus |
arm_3L | 3052934..3053027 | 200..293 | 100 | -> | Plus |
arm_3L | 3053241..3053740 | 294..793 | 100 | -> | Plus |
arm_3L | 3053798..3053881 | 794..877 | 98 | | Plus |
BO04266.complete Sequence
1702 bp assembled on 2007-03-23
GenBank Submission: FJ629706
> BO04266.complete
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCAT
CCTACTGCCTTCGGTCCGGATTGGGCCAACACAGAGATACCCATTGCTGC
CTCTTTAAGTGACCAAACAGCAGCCATTTGGGGCTCGCAGTGTTTCCAGA
AGAACGACGTCAAGGTCACAATGGGTACTGGTGCGTTCCTTAATCTGGTA
ACAGGCGATCGTTGCCAAGCTGTCATCTCTGGCATGTATCCATTGGTGGC
CTGGCAGTTCAAGAAACCAACCAGGCAGCAGGGAGCTGTCTACTGCATTG
AGGGAGCATCCCATGACTTTGGCACCGTGGTCACTTGGGCGCAATCGTGC
GAGCTCTTCGATAGTCCAGCGAACACCTCAGATATTGCACAGTCCGTTCC
AGATACGAACGATGTGTTCTTCATGCCGGCCTTCAGTGGCCTGGGGCCCC
CGGTGAACGATTATCGGTCAGCAAGTGGCTTTATTGGCCTCACTCCGTCC
ACCACCAAAGCCCACATGGTGCGGGCTCTGCTCGAGAGCATAGTATTTCG
TCTGGTGCAGCTGATCGAGGCCGCTGAGAAGGAGACCTCTCAGAAGCTTC
ATATGATTAGGGTTGATGGCGGCGTCTCCCGCAATGACTTCGTCTGCCAA
TTCCTTGCGGATCTCAGCCGACTGCGGGTGGAGCGGGCGGACAATGCGGA
GAGCAGCATCATGGGAGCCACGTTCATGGCGGGCATCAACCTCGGAATCT
GGCGCGATGTGAACGATCTCAAACGTTTCCGGAAAGTGGCGCGAGTCTTT
GAACCGCGTCCCAAGGAGTACGAAACCATTGCCAACCGGATGGACAAATG
GAGCCGGACGATTGCCCGGTTTAGTGACTGGTATGCAAGCTTTCTAGACC
AT
BO04266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-RA | 1671 | CG1271-PA | 1..1668 | 17..1684 | 8340 | 100 | Plus |
CG1271-RB | 1221 | CG1271-PB | 1..1218 | 467..1684 | 6090 | 100 | Plus |
CG1271-RD | 1620 | CG1271-PD | 535..1617 | 602..1684 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-RA | 1776 | CG1271-RA | 14..1683 | 15..1684 | 8350 | 100 | Plus |
CG1271-RB | 1998 | CG1271-RB | 421..1905 | 200..1684 | 7425 | 100 | Plus |
CG1271-RC | 2057 | CG1271-RC | 421..1632 | 200..1411 | 6060 | 100 | Plus |
CG1271-RB | 1998 | CG1271-RB | 159..345 | 15..201 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3053241..3053740 | 294..793 | 2500 | 100 | Plus |
3L | 28110227 | 3L | 3053798..3054250 | 794..1246 | 2265 | 100 | Plus |
3L | 28110227 | 3L | 3054536..3054813 | 1407..1684 | 1390 | 100 | Plus |
3L | 28110227 | 3L | 3052672..3052858 | 15..201 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3054316..3054481 | 1246..1411 | 830 | 100 | Plus |
3L | 28110227 | 3L | 3052934..3053027 | 200..293 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:04:59 has no hits.
BO04266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:40 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 1..1671 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:55 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..1689 | 15..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:58 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 16..1683 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:40 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..1689 | 15..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:37 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 16..1683 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:37 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3052674..3052856 | 17..199 | 100 | -> | Plus |
3L | 3052934..3053027 | 200..293 | 100 | -> | Plus |
3L | 3053241..3053740 | 294..793 | 100 | -> | Plus |
3L | 3053798..3054250 | 794..1246 | 100 | -> | Plus |
3L | 3054317..3054480 | 1247..1410 | 100 | -> | Plus |
3L | 3054540..3054813 | 1411..1686 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:58 Download gff for
BO04266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3052674..3052856 | 17..199 | 100 | -> | Plus |
arm_3L | 3052934..3053027 | 200..293 | 100 | -> | Plus |
arm_3L | 3053241..3053740 | 294..793 | 100 | -> | Plus |
arm_3L | 3053798..3054250 | 794..1246 | 100 | -> | Plus |
arm_3L | 3054317..3054480 | 1247..1410 | 100 | -> | Plus |
arm_3L | 3054540..3054813 | 1411..1686 | 99 | | Plus |
BO04266.pep Sequence
Translation from 16 to 1702
> BO04266.pep
MSAPSKVAAKPAGAAKDSQCAEESGPPDSPAFILALDVGTTCVRSFVLDE
QCEVRGSAVDAVELLNPQPGYFEIEPESLWRKIVGVITQAVKNAQLTPPD
ITCLTISTQRCTFLTWDHRSGEYYHNFITWKDLRADELVDQWNASWTKSS
MNWFSYALFLLTRQSRFLAGSVLQLMNGQVTPRLLFEIMNNKKLKQALMQ
KKARVELLDSWILHKLRTGSSRDKDVEHITDVTSSTATGLYDPFTLSWSP
LISWLFGINSKILPRVVDNGYKGFGHVHPTAFGPDWANTEIPIAASLSDQ
TAAIWGSQCFQKNDVKVTMGTGAFLNLVTGDRCQAVISGMYPLVAWQFKK
PTRQQGAVYCIEGASHDFGTVVTWAQSCELFDSPANTSDIAQSVPDTNDV
FFMPAFSGLGPPVNDYRSASGFIGLTPSTTKAHMVRALLESIVFRLVQLI
EAAEKETSQKLHMIRVDGGVSRNDFVCQFLADLSRLRVERADNAESSIMG
ATFMAGINLGIWRDVNDLKRFRKVARVFEPRPKEYETIANRMDKWSRTIA
RFSDWYASFLDH
BO04266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-PA | 556 | CG1271-PA | 1..556 | 1..556 | 2927 | 100 | Plus |
CG1271-PD | 539 | CG1271-PD | 1..539 | 1..556 | 2814 | 96.9 | Plus |
CG1271-PB | 406 | CG1271-PB | 1..406 | 151..556 | 2126 | 100 | Plus |
CG1271-PC | 384 | CG1271-PC | 1..315 | 151..465 | 1648 | 100 | Plus |
Gk-PF | 576 | CG7995-PF | 36..533 | 36..555 | 440 | 25.9 | Plus |