Clone BO04266 Report

Search the DGRC for BO04266

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG1271-RA
Protein status:BO04266.pep: validated full length
Sequenced Size:1702

Clone Sequence Records

BO04266.3prime Sequence

884 bp (832 high quality bases) assembled on 2005-12-01

> BO04266.3prime
ATGGTCTAGAAAGCTTGCATACCAGTCACTAAACCGGGCAATCGTCCGGC
TCCATTTGTCCATCCGGTTGGCAATGGTTTCGTACTCCTTGGGACGCGGT
TCAAAGACTCGCGCCACTTTCCGGAAACGTTTGAGATCGTTCACATCGCG
CCAGATTCCGAGGTTGATGCCCGCCATGAACGTGGCTCCCATGATGCTGC
TCTCCGCATTGTCCGCCCGCTCCACCCGCAGTCGGCTGAGATCCGCAAGG
AATTGGCAGACGAAGTCATTGCGGGAGACGCCGCCATCAACCCTAATCAT
ATGAAGCTTCTGAGAGGTCTCCTTCTCAGCGGCCTCGATCAGCTGCACCA
GACGAAATACTATGCTCTCGAGCAGAGCCCGCACCATGTGGGCTTTGGTG
GTGGACGGAGTGAGGCCAATAAAGCCACTTGCTGACCGATAATCGTTCAC
CGGGGGCCCCAGGCCACTGAAGGCCGGCATGAAGAACACATCGTTCGTAT
CTGGAACGGACTGTGCAATATCTGAGGTGTTCGCTGGACTATCGAAGAGC
TCGCACGATTGCGCCCAAGTGACCACGGTGCCAAAGTCATGGGATGCTCC
CTCAATGCAGTAGACAGCTCCCTGCTGCCTGGTTGGTTTCTTGAACTGCC
AGGCCACCAATGGATACATGCCAGAGATGACAGCTTGGCAACGATCGCCT
GTTACCAGATTAAGGAACGCACCAGTACCCATTGTGACCTTGACGTCGTT
CTTCTGGAAACACTGCGAGCCCCAAATGGCTGCTGTTTGGTCACTTAAAG
AGGCAGCAATGGGTATCTCTGTGTTGGCCCAATCCGGACCGAAGGCAGTA
GGATGCACATGGCCAAAGCCCTTGTAGCCGTTGT

BO04266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PB 1221 CG1271-RB 353..1218 884..19 4305 99.8 Minus
CG1271-PA 1671 CG1271-RA 803..1668 884..19 4305 99.8 Minus
CG1271-PD 1620 CG1271-RD 752..1617 884..19 4305 99.8 Minus
CG1271-PC 1155 CG1271-RC 353..945 884..292 2940 99.8 Minus
CG1271-PC 1155 CG1271-RC 1000..1155 296..141 780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RD 1725 CG1271-RD 767..1632 884..19 4315 99.9 Minus
CG1271-RA 1776 CG1271-RA 818..1683 884..19 4315 99.9 Minus
CG1271-RB 1998 CG1271-RB 1040..1905 884..19 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053823..3054250 884..457 2125 99.8 Minus
3L 28110227 3L 3054536..3054813 296..19 1390 100 Minus
3L 28110227 3L 3054316..3054481 457..292 830 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:16:15 has no hits.

BO04266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:23 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PD 752..1620 18..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:19 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PD 752..1620 18..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:36 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RB 1040..1911 11..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:33 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RB 1040..1911 11..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:33 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3053823..3054250 457..884 99 -> Minus
3L 3054317..3054480 293..456 100 -> Minus
3L 3054540..3054819 11..292 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:36 Download gff for BO04266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3053823..3054250 457..884 99 -> Minus
arm_3L 3054317..3054480 293..456 100 -> Minus
arm_3L 3054540..3054819 11..292 98   Minus

BO04266.5prime Sequence

878 bp (808 high quality bases) assembled on 2005-12-01

> BO04266.5prime
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCAT
CCTACTGCCTTCGGTCCGGATGGGGCCA

BO04266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 1671 CG1271-RA 1..862 17..878 4285 99.8 Plus
CG1271-PD 1620 CG1271-RD 1..538 17..554 2690 100 Plus
CG1271-PB 1221 CG1271-RB 1..412 467..878 2035 99.7 Plus
CG1271-PC 1155 CG1271-RC 1..412 467..878 2035 99.7 Plus
CG1271-PD 1620 CG1271-RD 535..811 602..878 1360 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1776 CG1271-RA 14..877 15..878 4305 99.9 Plus
CG1271-RC 2057 CG1271-RC 421..1099 200..878 3380 99.9 Plus
CG1271-RB 1998 CG1271-RB 421..1099 200..878 3380 99.9 Plus
CG1271-RC 2057 CG1271-RC 159..345 15..201 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053241..3053740 294..793 2500 100 Plus
3L 28110227 3L 3052672..3052858 15..201 935 100 Plus
3L 28110227 3L 3052934..3053027 200..293 470 100 Plus
3L 28110227 3L 3053798..3053882 794..878 410 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:17:29 has no hits.

BO04266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:24 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:21 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:43 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..876 15..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:05 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..876 15..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:05 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3052672..3052856 15..199 100 -> Plus
3L 3052934..3053027 200..293 100 -> Plus
3L 3053241..3053740 294..793 100 -> Plus
3L 3053798..3053881 794..877 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:43 Download gff for BO04266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3052672..3052856 15..199 100 -> Plus
arm_3L 3052934..3053027 200..293 100 -> Plus
arm_3L 3053241..3053740 294..793 100 -> Plus
arm_3L 3053798..3053881 794..877 98   Plus

BO04266.complete Sequence

1702 bp assembled on 2007-03-23

GenBank Submission: FJ629706

> BO04266.complete
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCAT
CCTACTGCCTTCGGTCCGGATTGGGCCAACACAGAGATACCCATTGCTGC
CTCTTTAAGTGACCAAACAGCAGCCATTTGGGGCTCGCAGTGTTTCCAGA
AGAACGACGTCAAGGTCACAATGGGTACTGGTGCGTTCCTTAATCTGGTA
ACAGGCGATCGTTGCCAAGCTGTCATCTCTGGCATGTATCCATTGGTGGC
CTGGCAGTTCAAGAAACCAACCAGGCAGCAGGGAGCTGTCTACTGCATTG
AGGGAGCATCCCATGACTTTGGCACCGTGGTCACTTGGGCGCAATCGTGC
GAGCTCTTCGATAGTCCAGCGAACACCTCAGATATTGCACAGTCCGTTCC
AGATACGAACGATGTGTTCTTCATGCCGGCCTTCAGTGGCCTGGGGCCCC
CGGTGAACGATTATCGGTCAGCAAGTGGCTTTATTGGCCTCACTCCGTCC
ACCACCAAAGCCCACATGGTGCGGGCTCTGCTCGAGAGCATAGTATTTCG
TCTGGTGCAGCTGATCGAGGCCGCTGAGAAGGAGACCTCTCAGAAGCTTC
ATATGATTAGGGTTGATGGCGGCGTCTCCCGCAATGACTTCGTCTGCCAA
TTCCTTGCGGATCTCAGCCGACTGCGGGTGGAGCGGGCGGACAATGCGGA
GAGCAGCATCATGGGAGCCACGTTCATGGCGGGCATCAACCTCGGAATCT
GGCGCGATGTGAACGATCTCAAACGTTTCCGGAAAGTGGCGCGAGTCTTT
GAACCGCGTCCCAAGGAGTACGAAACCATTGCCAACCGGATGGACAAATG
GAGCCGGACGATTGCCCGGTTTAGTGACTGGTATGCAAGCTTTCTAGACC
AT

BO04266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1671 CG1271-PA 1..1668 17..1684 8340 100 Plus
CG1271-RB 1221 CG1271-PB 1..1218 467..1684 6090 100 Plus
CG1271-RD 1620 CG1271-PD 535..1617 602..1684 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1776 CG1271-RA 14..1683 15..1684 8350 100 Plus
CG1271-RB 1998 CG1271-RB 421..1905 200..1684 7425 100 Plus
CG1271-RC 2057 CG1271-RC 421..1632 200..1411 6060 100 Plus
CG1271-RB 1998 CG1271-RB 159..345 15..201 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053241..3053740 294..793 2500 100 Plus
3L 28110227 3L 3053798..3054250 794..1246 2265 100 Plus
3L 28110227 3L 3054536..3054813 1407..1684 1390 100 Plus
3L 28110227 3L 3052672..3052858 15..201 935 100 Plus
3L 28110227 3L 3054316..3054481 1246..1411 830 100 Plus
3L 28110227 3L 3052934..3053027 200..293 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:04:59 has no hits.

BO04266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:40 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 17..1685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:55 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..1689 15..1692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:58 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 16..1683 17..1686 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:40 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..1689 15..1692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:37 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 16..1683 17..1686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:37 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3052674..3052856 17..199 100 -> Plus
3L 3052934..3053027 200..293 100 -> Plus
3L 3053241..3053740 294..793 100 -> Plus
3L 3053798..3054250 794..1246 100 -> Plus
3L 3054317..3054480 1247..1410 100 -> Plus
3L 3054540..3054813 1411..1686 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:58 Download gff for BO04266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3052674..3052856 17..199 100 -> Plus
arm_3L 3052934..3053027 200..293 100 -> Plus
arm_3L 3053241..3053740 294..793 100 -> Plus
arm_3L 3053798..3054250 794..1246 100 -> Plus
arm_3L 3054317..3054480 1247..1410 100 -> Plus
arm_3L 3054540..3054813 1411..1686 99   Plus

BO04266.pep Sequence

Translation from 16 to 1702

> BO04266.pep
MSAPSKVAAKPAGAAKDSQCAEESGPPDSPAFILALDVGTTCVRSFVLDE
QCEVRGSAVDAVELLNPQPGYFEIEPESLWRKIVGVITQAVKNAQLTPPD
ITCLTISTQRCTFLTWDHRSGEYYHNFITWKDLRADELVDQWNASWTKSS
MNWFSYALFLLTRQSRFLAGSVLQLMNGQVTPRLLFEIMNNKKLKQALMQ
KKARVELLDSWILHKLRTGSSRDKDVEHITDVTSSTATGLYDPFTLSWSP
LISWLFGINSKILPRVVDNGYKGFGHVHPTAFGPDWANTEIPIAASLSDQ
TAAIWGSQCFQKNDVKVTMGTGAFLNLVTGDRCQAVISGMYPLVAWQFKK
PTRQQGAVYCIEGASHDFGTVVTWAQSCELFDSPANTSDIAQSVPDTNDV
FFMPAFSGLGPPVNDYRSASGFIGLTPSTTKAHMVRALLESIVFRLVQLI
EAAEKETSQKLHMIRVDGGVSRNDFVCQFLADLSRLRVERADNAESSIMG
ATFMAGINLGIWRDVNDLKRFRKVARVFEPRPKEYETIANRMDKWSRTIA
RFSDWYASFLDH

BO04266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 556 CG1271-PA 1..556 1..556 2927 100 Plus
CG1271-PD 539 CG1271-PD 1..539 1..556 2814 96.9 Plus
CG1271-PB 406 CG1271-PB 1..406 151..556 2126 100 Plus
CG1271-PC 384 CG1271-PC 1..315 151..465 1648 100 Plus
Gk-PF 576 CG7995-PF 36..533 36..555 440 25.9 Plus