Clone Sequence Records
BO04267.3prime Sequence
905 bp (826 high quality bases) assembled on 2005-12-01
> BO04267.3prime
ATGGTCTAGAAAGCTTGCGTTTGCCTGCACCTCGCGCGGCGAGCTGATGG
AATTGCCCAGGTCCGCGGGCTCCGTGCACTTCCACAAGCCGTAGGTCTTG
CCCACGGTGGTCTGCCACAGCCGGAGAGTGCCGTCCTCGGAGCCGCTGGC
ATAGAGTTCGCCATCCGGGCTGAACTTCACGCTGTGCACGGGCCCGAAAT
GTCCCTTGAAAGATTCAATTTCGTTTCCTGTGATGTAGTCGAATTTGTAC
ATCTTAAAGTCCTCGCCGCCACAAACAAACACATGCTTATCCGGATGCAA
ACTGGCCGACGCCACGTTCGTCGGCACTTTCACCTCCTTCAGCTTCTTCA
GCGTGTCGATCTCCCAGAAGCTAATCGAGGAGCCGTGCGATATGGTCAGT
ATGTGGTTGTCGCTGGAGATCTCTAGGCTGTTCGGATTGCTGTTGAACTG
CAGGCGCTGCACCTCGATGCCCGTCATGCGGTCCCAGAGGCGCACCGTCT
TGTCCTCGGCCGCCGAGATGATGCACTTGTCGCCGCGGCAGAAGAGCGCC
CGCTTGATGGCCCCCGTATGTCCGGCGTACTCCTCCGGCTGCGCCTCGGG
CTGCTCCAGGTTGAAGACCCGCACCAGCTTCTCGTTGCTGCCAGTCACTA
TGTTCTCGGAATCCCTGTCGAAGGCCACGCTCTTCACGATGTGCTTGTGC
TGGAAGCTGTGTATCTCGGCCCCGGTCACCGCATTCCACACCTTGCCGGT
GAAGTCGGCCGCTCCGGAGGCGGCCAGGGTGGCATTTCGGTTCAGCGTGG
CGTTCCACACGGCGCCCTTGTGTCCCTCGAAGGTGCCCACCCAGTCGCCG
GTGTCGCCGTGCCGCAGCATCGGGCTGCCATCTTTGCAGGCCGAGATGAG
AAAGT
BO04267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3957-PA | 987 | CG3957-RA | 98..984 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 531..1417 | 905..19 | 4435 | 100 | Minus |
wmd-RA | 1606 | CG3957-RA | 476..1362 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545326..23545993 | 216..883 | 3340 | 100 | Plus |
2R | 25286936 | 2R | 23545067..23545264 | 19..216 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:17:42 has no hits.
BO04267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:25 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 98..987 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:22 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 98..987 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:45 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 476..1369 | 11..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:40 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 476..1369 | 11..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:40 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545060..23545263 | 11..215 | 98 | <- | Plus |
2R | 23545326..23545991 | 216..881 | 100 | <- | Plus |
2R | 23547490..23547513 | 882..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:45 Download gff for
BO04267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432583..19432786 | 11..215 | 98 | <- | Plus |
arm_2R | 19432849..19433514 | 216..881 | 100 | <- | Plus |
arm_2R | 19435013..19435036 | 882..905 | 100 | | Plus |
BO04267.5prime Sequence
791 bp (789 high quality bases) assembled on 2005-12-01
> BO04267.5prime
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAG
BO04267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3957-PA | 987 | CG3957-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 433..1208 | 16..791 | 3880 | 100 | Plus |
wmd-RA | 1606 | CG3957-RA | 378..1153 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545338..23545993 | 791..136 | 3280 | 100 | Minus |
2R | 25286936 | 2R | 23547490..23547611 | 137..16 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:03:47 has no hits.
BO04267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:26 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:24 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:31 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 372..1153 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:32 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 372..1153 | 9..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:32 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545338..23545991 | 138..791 | 100 | <- | Minus |
2R | 23547490..23547617 | 9..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:31 Download gff for
BO04267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432861..19433514 | 138..791 | 100 | <- | Minus |
arm_2R | 19435013..19435140 | 9..137 | 97 | | Minus |
BO04267.complete Sequence
1018 bp (1018 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629707
> BO04267.complete
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGCAGACCACCGTGGGCAAGACCTACGGCTTGTGGAAGTGCACGGAGC
CCGCGGACCTGGGCAATTCCATCAGCTCGCCGCGCGAGGTGCAGGCAAAC
GCAAGCTTTCTAGACCAT
BO04267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 987 | CG3957-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
wmd-RA | 987 | CG3957-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 433..1417 | 16..1000 | 4925 | 100 | Plus |
wmd-RA | 1606 | CG3957-RA | 378..1362 | 16..1000 | 4925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545326..23545993 | 803..136 | 3340 | 100 | Minus |
2R | 25286936 | 2R | 23545067..23545264 | 1000..803 | 990 | 100 | Minus |
2R | 25286936 | 2R | 23547490..23547611 | 137..16 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:21:47 has no hits.
BO04267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:49 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 1..987 | 17..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:35 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 356..1353 | 9..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:07 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 379..1362 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:49 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 356..1353 | 9..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:33 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 379..1362 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:33 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545064..23545263 | 804..1002 | 99 | <- | Minus |
2R | 23545326..23545991 | 138..803 | 100 | <- | Minus |
2R | 23547490..23547610 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:07 Download gff for
BO04267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432587..19432786 | 804..1002 | 99 | <- | Minus |
arm_2R | 19432849..19433514 | 138..803 | 100 | <- | Minus |
arm_2R | 19435013..19435133 | 17..137 | 100 | | Minus |
BO04267.pep Sequence
Translation from 16 to 1018
> BO04267.pep
MAANNLRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGD
TGDWVGTFEGHKGAVWNATLNRNATLAASGAADFTGKVWNAVTGAEIHSF
QHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQPEEYAGHTGAIK
RALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNH
ILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDKHVFVCGGEDFK
MYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTV
GKTYGLWKCTEPADLGNSISSPREVQANASFLDH
BO04267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-PB | 328 | CG3957-PB | 1..328 | 1..328 | 1754 | 100 | Plus |
wmd-PA | 328 | CG3957-PA | 1..328 | 1..328 | 1754 | 100 | Plus |
CG10459-PA | 322 | CG10459-PA | 4..297 | 8..297 | 493 | 35.4 | Plus |
Trip1-PA | 326 | CG8882-PA | 3..320 | 10..304 | 290 | 29.3 | Plus |
CG30116-PB | 1698 | CG30116-PB | 1242..1493 | 50..301 | 225 | 27.9 | Plus |