Clone BO04267 Report

Search the DGRC for BO04267

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptwmd-RA
Protein status:BO04267.pep: validated full length
Sequenced Size:1018

Clone Sequence Records

BO04267.3prime Sequence

905 bp (826 high quality bases) assembled on 2005-12-01

> BO04267.3prime
ATGGTCTAGAAAGCTTGCGTTTGCCTGCACCTCGCGCGGCGAGCTGATGG
AATTGCCCAGGTCCGCGGGCTCCGTGCACTTCCACAAGCCGTAGGTCTTG
CCCACGGTGGTCTGCCACAGCCGGAGAGTGCCGTCCTCGGAGCCGCTGGC
ATAGAGTTCGCCATCCGGGCTGAACTTCACGCTGTGCACGGGCCCGAAAT
GTCCCTTGAAAGATTCAATTTCGTTTCCTGTGATGTAGTCGAATTTGTAC
ATCTTAAAGTCCTCGCCGCCACAAACAAACACATGCTTATCCGGATGCAA
ACTGGCCGACGCCACGTTCGTCGGCACTTTCACCTCCTTCAGCTTCTTCA
GCGTGTCGATCTCCCAGAAGCTAATCGAGGAGCCGTGCGATATGGTCAGT
ATGTGGTTGTCGCTGGAGATCTCTAGGCTGTTCGGATTGCTGTTGAACTG
CAGGCGCTGCACCTCGATGCCCGTCATGCGGTCCCAGAGGCGCACCGTCT
TGTCCTCGGCCGCCGAGATGATGCACTTGTCGCCGCGGCAGAAGAGCGCC
CGCTTGATGGCCCCCGTATGTCCGGCGTACTCCTCCGGCTGCGCCTCGGG
CTGCTCCAGGTTGAAGACCCGCACCAGCTTCTCGTTGCTGCCAGTCACTA
TGTTCTCGGAATCCCTGTCGAAGGCCACGCTCTTCACGATGTGCTTGTGC
TGGAAGCTGTGTATCTCGGCCCCGGTCACCGCATTCCACACCTTGCCGGT
GAAGTCGGCCGCTCCGGAGGCGGCCAGGGTGGCATTTCGGTTCAGCGTGG
CGTTCCACACGGCGCCCTTGTGTCCCTCGAAGGTGCCCACCCAGTCGCCG
GTGTCGCCGTGCCGCAGCATCGGGCTGCCATCTTTGCAGGCCGAGATGAG
AAAGT

BO04267.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3957-PA 987 CG3957-RA 98..984 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 531..1417 905..19 4435 100 Minus
wmd-RA 1606 CG3957-RA 476..1362 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545326..23545993 216..883 3340 100 Plus
2R 25286936 2R 23545067..23545264 19..216 990 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:17:42 has no hits.

BO04267.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:25 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 98..987 16..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:22 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 98..987 16..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:45 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 476..1369 11..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:40 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 476..1369 11..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:40 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23545060..23545263 11..215 98 <- Plus
2R 23545326..23545991 216..881 100 <- Plus
2R 23547490..23547513 882..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:45 Download gff for BO04267.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432583..19432786 11..215 98 <- Plus
arm_2R 19432849..19433514 216..881 100 <- Plus
arm_2R 19435013..19435036 882..905 100   Plus

BO04267.5prime Sequence

791 bp (789 high quality bases) assembled on 2005-12-01

> BO04267.5prime
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAG

BO04267.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3957-PA 987 CG3957-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 433..1208 16..791 3880 100 Plus
wmd-RA 1606 CG3957-RA 378..1153 16..791 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545338..23545993 791..136 3280 100 Minus
2R 25286936 2R 23547490..23547611 137..16 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:03:47 has no hits.

BO04267.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:26 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:24 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:31 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 372..1153 9..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:32 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 372..1153 9..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:32 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23545338..23545991 138..791 100 <- Minus
2R 23547490..23547617 9..137 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:31 Download gff for BO04267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432861..19433514 138..791 100 <- Minus
arm_2R 19435013..19435140 9..137 97   Minus

BO04267.complete Sequence

1018 bp (1018 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629707

> BO04267.complete
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGCAGACCACCGTGGGCAAGACCTACGGCTTGTGGAAGTGCACGGAGC
CCGCGGACCTGGGCAATTCCATCAGCTCGCCGCGCGAGGTGCAGGCAAAC
GCAAGCTTTCTAGACCAT

BO04267.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 987 CG3957-PB 1..984 17..1000 4920 100 Plus
wmd-RA 987 CG3957-PA 1..984 17..1000 4920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 433..1417 16..1000 4925 100 Plus
wmd-RA 1606 CG3957-RA 378..1362 16..1000 4925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545326..23545993 803..136 3340 100 Minus
2R 25286936 2R 23545067..23545264 1000..803 990 100 Minus
2R 25286936 2R 23547490..23547611 137..16 610 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:21:47 has no hits.

BO04267.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:49 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 1..987 17..1003 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:35 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 356..1353 9..1008 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:07 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 379..1362 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:49 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 356..1353 9..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:33 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 379..1362 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:33 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23545064..23545263 804..1002 99 <- Minus
2R 23545326..23545991 138..803 100 <- Minus
2R 23547490..23547610 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:07 Download gff for BO04267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432587..19432786 804..1002 99 <- Minus
arm_2R 19432849..19433514 138..803 100 <- Minus
arm_2R 19435013..19435133 17..137 100   Minus

BO04267.pep Sequence

Translation from 16 to 1018

> BO04267.pep
MAANNLRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGD
TGDWVGTFEGHKGAVWNATLNRNATLAASGAADFTGKVWNAVTGAEIHSF
QHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQPEEYAGHTGAIK
RALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNH
ILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDKHVFVCGGEDFK
MYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTV
GKTYGLWKCTEPADLGNSISSPREVQANASFLDH

BO04267.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-PB 328 CG3957-PB 1..328 1..328 1754 100 Plus
wmd-PA 328 CG3957-PA 1..328 1..328 1754 100 Plus
CG10459-PA 322 CG10459-PA 4..297 8..297 493 35.4 Plus
Trip1-PA 326 CG8882-PA 3..320 10..304 290 29.3 Plus
CG30116-PB 1698 CG30116-PB 1242..1493 50..301 225 27.9 Plus