Clone Sequence Records
BO04269.3prime Sequence
962 bp (868 high quality bases) assembled on 2005-12-01
> BO04269.3prime
ATGGTCTAGAAAGCTTGCCCACAACTTATTGTGATAGAACTTTAGATCGT
AGTAGCCCTGATCGGTGAGGCCGCCGCCGCCGGAGGACACGGTGGACATG
GCATCCGTATTGTCCTGGCCCGGCGAGGTGACTTCATGACCCGGCGGACG
GTTGATCTTCACTACGCCGAAATCTTCGCGCTCCATCTGATCGAACTCCA
TCTTGCTGCTGGGCATCACGGCCATTCCGACGCCAAACGAGCGATTCTTC
ATGCCCGTGTGCTGCTTGCTCAGCTGGAAAGCCGGAGCTCTCCGGTTGTC
GCCCACAATGCTCTCGGCCACCTCGGGCGATCGCACGGATGGTGGAGTCG
GAGTGTGGCTCTTTGGCGGCGGTGATGGTGGCGTAATCACCTCCGGTTCG
GGTTCGGGTTCCGGCTCAGGCTCTGGCTCCGGTTCAACTTCTGGCTCCGG
CTCATAGCTGTTGGCTTCCAAGTCGGCCAGGCTCTGGCGCTGCAGTTGCT
CGGCAATCTCTGGAATATCGTGATTACCATTGCCACTGTTCGCTTCTGCA
CTGCCATTGCCATTTCCGCCCTTCGAGTTGCCGGCATGAATTATCTCGGC
CATGCTGCAGGTGGGACGTTTAGCCCCATATCGTCCGGACGGAGAGATCT
GTGTTATCTGCTGCAGTCGTGCATTCGGTGTTGTCTGCTGCTGCGAACCA
CGTCGCTGGTTAGAATCCTCGCCCAGGTAAGTAGCGCCAAAGAGGTGTGT
GTTAGGACTGTTTGTGATGTGCAGGCCATTCGGGGTGCCGTTAGCATGAC
CGTTACCACCTCCATTCCCCGATTCCCCATCGTTAAAGAATCCCTCGTAG
AGCACGAAATTGTTCGCTTGCGGAATGATTCGCTTTAATCCGTAATGCTT
GCTAAGGAAGGACAGTAGCTTTTTCGACGGCCGATCCACCGAGCACTTGC
GTGCGGTCCACT
BO04269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PC | 1386 | CG3967-RC | 440..1383 | 962..19 | 4695 | 99.8 | Minus |
| CG3967-PD | 1386 | CG3967-RD | 440..1383 | 962..19 | 4695 | 99.8 | Minus |
| CG3967-PE | 1386 | CG3967-RE | 440..1383 | 962..19 | 4695 | 99.8 | Minus |
| CG3967-PA | 1386 | CG3967-RA | 440..1383 | 962..19 | 4695 | 99.8 | Minus |
| CG3967-PB | 876 | CG3967-RB | 440..866 | 962..536 | 2110 | 99.7 | Minus |
| CG32555-PB | 4686 | RhoGAPp190-RB | 3333..3359 | 391..417 | 135 | 100 | Plus |
| CG32555-PC | 4686 | RhoGAPp190-RC | 3333..3359 | 391..417 | 135 | 100 | Plus |
| CG32555-PA | 4686 | RhoGAPp190-RA | 3333..3359 | 391..417 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 2238 | CG3967-RA | 642..1585 | 962..19 | 4705 | 99.9 | Minus |
| CG3967-RE | 2142 | CG3967-RE | 546..1489 | 962..19 | 4705 | 99.9 | Minus |
| CG3967-RD | 2196 | CG3967-RD | 600..1543 | 962..19 | 4705 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9414249..9414770 | 19..540 | 2610 | 100 | Plus |
| 3L | 28110227 | 3L | 9418344..9418548 | 758..962 | 1010 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9417652..9417819 | 595..762 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9415408..9415468 | 536..596 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:53:44 has no hits.
BO04269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:28 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PA | 440..1386 | 16..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:28 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PD | 440..1386 | 16..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:18 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 600..1548 | 14..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:01 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 600..1548 | 14..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:01 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9414244..9414765 | 14..535 | 99 | <- | Plus |
| 3L | 9415408..9415466 | 536..594 | 100 | <- | Plus |
| 3L | 9417652..9417814 | 595..757 | 100 | <- | Plus |
| 3L | 9418344..9418548 | 758..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:18 Download gff for
BO04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9407344..9407865 | 14..535 | 99 | <- | Plus |
| arm_3L | 9408508..9408566 | 536..594 | 100 | <- | Plus |
| arm_3L | 9410752..9410914 | 595..757 | 100 | <- | Plus |
| arm_3L | 9411444..9411648 | 758..962 | 99 | | Plus |
BO04269.5prime Sequence
870 bp (757 high quality bases) assembled on 2005-11-29
> BO04269.5prime
GAAGTTATCAGTCGACATGGTGGAATTCCGCTTCGATATTAAGCCGCTGT
TCGCGCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTT
CGCGGCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGAT
CATTGACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAAC
CGGTGACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTAT
CTGCTGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTT
GAAGGTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGC
GCATGGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCT
CGTCAGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGA
AGAGCAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGC
TACTGTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAA
GCGAACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGG
GAATGGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACA
TCACAAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAG
GATTCTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACG
ACTGCAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAAC
GTCCCACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTCGAAGGGC
GGAAATGGCAATGGCAGTGC
BO04269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PB | 876 | CG3967-RB | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3967-PC | 1386 | CG3967-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3967-PD | 1386 | CG3967-RD | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3967-PE | 1386 | CG3967-RE | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3967-PA | 1386 | CG3967-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RF | 1485 | CG3967-RF | 161..1014 | 17..870 | 4270 | 100 | Plus |
| CG3967-RA | 2238 | CG3967-RA | 203..1056 | 17..870 | 4270 | 100 | Plus |
| CG3967-RE | 2142 | CG3967-RE | 107..960 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9418344..9418724 | 660..280 | 1905 | 100 | Minus |
| 3L | 28110227 | 3L | 9417652..9417819 | 823..656 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 9418844..9418999 | 279..124 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9419095..9419201 | 123..17 | 535 | 100 | Minus |
| 3L | 28110227 | 3L | 9415420..9415468 | 870..822 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:33:05 has no hits.
BO04269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:29 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PD | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:29 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:14 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..960 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:27 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..960 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:27 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9415420..9415466 | 824..870 | 100 | <- | Minus |
| 3L | 9417652..9417814 | 661..823 | 100 | <- | Minus |
| 3L | 9418344..9418724 | 280..660 | 100 | <- | Minus |
| 3L | 9418844..9418999 | 124..279 | 100 | <- | Minus |
| 3L | 9419095..9419205 | 9..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:14 Download gff for
BO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9408520..9408566 | 824..870 | 100 | <- | Minus |
| arm_3L | 9410752..9410914 | 661..823 | 100 | <- | Minus |
| arm_3L | 9411444..9411824 | 280..660 | 100 | <- | Minus |
| arm_3L | 9411944..9412099 | 124..279 | 100 | <- | Minus |
| arm_3L | 9412195..9412305 | 9..123 | 96 | | Minus |
BO04269.complete Sequence
1417 bp (1417 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629708
> BO04269.complete
GAAGTTATCAGTCGACATGGTGGAATTCCGCTTCGATATTAAGCCGCTGT
TCGCGCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTT
CGCGGCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGAT
CATTGACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAAC
CGGTGACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTAT
CTGCTGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTT
GAAGGTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGC
GCATGGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCT
CGTCAGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGA
AGAGCAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGC
TACTGTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAA
GCGAACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGG
GAATGGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACA
TCACAAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAG
GATTCTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACG
ACTGCAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAAC
GTCCCACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTCGAAGGGC
GGAAATGGCAATGGCAGTGCAGAAGCGAACAGTGGCAATGGTAATCACGA
TATTCCAGAGATTGCCGAGCAACTGCAGCGCCAGAGCCTGGCCGACTTGG
AAGCCAACAGCTATGAGCCGGAGCCAGAAGTTGAACCGGAGCCAGAGCCT
GAGCCGGAACCCGAACCCGAACCGGAGGTGATTACGCCACCATCACCGCC
GCCAAAGAGCCACACTCCGACTCCACCATCCGTGCGATCGCCCGAGGTGG
CCGAGAGCATTGTGGGCGACAACCGGAGAGCTCCGGCTTTCCAGCTGAGC
AAGCAGCACACGGGCATGAAGAATCGCTCGTTTGGCGTCGGAATGGCCGT
GATGCCCAGCAGCAAGATGGAGTTCGATCAGATGGAGCGCGAAGATTTCG
GCGTAGTGAAGATCAACCGTCCGCCGGGTCATGAAGTCACCTCGCCGGGC
CAGGACAATACGGATGCCATGTCCACCGTGTCCTCCGGCGGCGGCGGCCT
CACCGATCAGGGCTACTACGATCTAAAGTTCTATCACAATAAGTTGTGGG
CAAGCTTTCTAGACCAT
BO04269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 1386 | CG3967-PA | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| CG3967-RE | 1386 | CG3967-PE | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| CG3967-RD | 1386 | CG3967-PD | 1..1383 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 2238 | CG3967-RA | 203..1585 | 17..1399 | 6915 | 100 | Plus |
| CG3967-RE | 2142 | CG3967-RE | 107..1489 | 17..1399 | 6915 | 100 | Plus |
| CG3967-RD | 2196 | CG3967-RD | 161..1543 | 17..1399 | 6915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9414249..9414770 | 1399..878 | 2610 | 100 | Minus |
| 3L | 28110227 | 3L | 9418344..9418724 | 660..280 | 1905 | 100 | Minus |
| 3L | 28110227 | 3L | 9417652..9417819 | 823..656 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 9418844..9418999 | 279..124 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9419095..9419201 | 123..17 | 535 | 100 | Minus |
| 3L | 28110227 | 3L | 9415408..9415468 | 882..822 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:45:57 has no hits.
BO04269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:13 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 1..1386 | 17..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:40 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..1494 | 9..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:13 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 161..1543 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:13 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..1494 | 9..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:32 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 161..1543 | 17..1401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:32 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9414246..9414765 | 883..1401 | 99 | <- | Minus |
| 3L | 9415408..9415466 | 824..882 | 100 | <- | Minus |
| 3L | 9417652..9417814 | 661..823 | 100 | <- | Minus |
| 3L | 9418344..9418724 | 280..660 | 100 | <- | Minus |
| 3L | 9418844..9418999 | 124..279 | 100 | <- | Minus |
| 3L | 9419095..9419201 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:13 Download gff for
BO04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9407346..9407865 | 883..1401 | 99 | <- | Minus |
| arm_3L | 9408508..9408566 | 824..882 | 100 | <- | Minus |
| arm_3L | 9410752..9410914 | 661..823 | 100 | <- | Minus |
| arm_3L | 9411444..9411824 | 280..660 | 100 | <- | Minus |
| arm_3L | 9411944..9412099 | 124..279 | 100 | <- | Minus |
| arm_3L | 9412195..9412301 | 17..123 | 100 | | Minus |
BO04269.pep Sequence
Translation from 16 to 1417
> BO04269.pep
MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG
QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK
NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA
RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN
GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT
QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA
EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT
PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK
MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY
YDLKFYHNKLWASFLDH
BO04269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PA | 461 | CG3967-PA | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PE | 461 | CG3967-PE | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PD | 461 | CG3967-PD | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PC | 461 | CG3967-PC | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PF | 291 | CG3967-PF | 1..288 | 1..288 | 1501 | 100 | Plus |
