Clone Sequence Records
BO04270.3prime Sequence
920 bp (846 high quality bases) assembled on 2005-12-01
> BO04270.3prime
ATGGTCTAGAAAGCTTGCGACGACGTGGGTCAGATCGGTGGGCGGAGTGA
CGGGACGCGACATTTGCGACTTGTATACCTCCTCGTTGTCGTCCTCATTC
TCTGCGTGCGAGTCCTGAGAGTCGTGCGAGTCCTCGGAGTCTCTGCAGTC
CCTGGAATCCTCCACATCGGAGTCCTGGATGTCGTCGAGCGGCGTCGTTG
TGGTCATTGAAGCGGAAGCAGCTGCTGCCAGGAAGTGGACCTTAGCAGAG
GCCGTCGAGTTATTGTTGTCCGCCATTAGCTGGTGGTGCAGGTGGTGGCT
GTAGTTCAAGGAGGGCGGGATTCTGCCGGTGGAGCTGGTCTGCCGCCGCA
ATAGGTTACCCACGTAGGCAGCTGTGATGGCGGCATAGGTCACTCCAAGG
AGGGCGCCGGCCAGGACGTCGGACCAGTGGTGCCAGTAGTCGGCTACGCG
GCTCAGGGAAACGCAGAGGGCAGCCATAAGGAGCAGGAACTGCAGGACGT
GCCGCAGGACTCGCACTCCCCCTCGTCCCCGCCACACCCCGTGTACGTAG
AGGGCCAGCAGGACCATCGAATAGAAGCTCAAGCTGCTGTGGGCACTCGG
GAAACTGACGTGCAACTCGCGGATCTGTCGCGTGGAGAGGTTGTTGTTAG
TGCAGTGGAACTGCTCCACGTACAGCTCAGCGTTCTGGAGGTCCGAGCAG
GAGCTGCCATCGTCGAGGCGCGGCTGGCAACCGTGGAAGAAGTGCGGCCT
CAGCCGCCCGACGGCGTGCTTCGCCAGCTCGGTGGTGAGATAGGTGGCTA
TGAAGCCGAAGCTGAAGGTGGCCTCTGCGCGCCACAGATTGCGGAAGTAA
AGCCTGGTGCGGAAGCGCTTGCAGATCCGCATGATCTCCACCACGGCCAC
GAAGAGCATCGGGAGCAGGA
BO04270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11440-PA | 1005 | CG11440-RA | 101..1002 | 920..19 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laza-RA | 2316 | CG11440-RA | 674..1575 | 920..19 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22459557..22460458 | 19..920 | 4495 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:42:58 has no hits.
BO04270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:30 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11440-PA | 102..1005 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:31 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11440-PA | 102..1005 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:17 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 675..1575 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:44 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 675..1575 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:44 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22459557..22460457 | 19..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:17 Download gff for
BO04270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22452657..22453557 | 19..919 | 99 | | Plus |
BO04270.5prime Sequence
820 bp (813 high quality bases) assembled on 2005-11-29
> BO04270.5prime
GAAGTTATCAGTCGACATGCACACTTTCAAAAGGGGCTTCTTTTGCTCTG
ATCTGAGCATACGGTATCCCTACAAGGACTGCACGATCACGGTGCCGATG
CTACTGCTCATGATGCTCCTGCTCCCGATGCTCTTCGTGGCCGTGGTGGA
GATCATGCGGATCTGCAAGCGCTTCCGCACCAGGCTCTACTTCCGCAATC
TGTGGCGCGCAGAGGCCACCTTCAGCTTCGGCTTCATAGCCACCTATCTC
ACCACCGAGCTGGCGAAGCACGCCGTCGGGCGGCTGAGGCCGCACTTCTT
CCACGGTTGCCAGCCGCGCCTCGACGATGGCAGCTCCTGCTCGGACCTCC
AGAACGCTGAGCTGTACGTGGAGCAGTTCCACTGCACTAACAACAACCTC
TCCACGCGACAGATCCGCGAGTTGCACGTCAGTTTCCCGAGTGCCCACAG
CAGCTTGAGCTTCTATTCGATGGTCCTGCTGGCCCTCTACGTACACGGGG
TGTGGCGGGGACGAGGGGGAGTGCGAGTCCTGCGGCACGTCCTGCAGTTC
CTGCTCCTTATGGCTGCCCTCTGCGTTTCCCTGAGCCGCGTAGCCGACTA
CTGGCACCACTGGTCCGACGTCCTGGCCGGCGCCCTCCTTGGAGTGACCT
ATGCCGCCATCACAGCTGCCTACGTGGGTAACCTATTGCGGCGGCAGACC
AGCTCCACCGGCAGAATCCCGCCCTCCTTGAACTACAGCCACCACCTGCA
CCACCAGCTAATGGCGGACAACAATAACTCGACGGCCTCTGCTAAGGTCC
ACTTCCTGGCAGCAGCTGCT
BO04270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11440-PA | 1005 | CG11440-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laza-RA | 2316 | CG11440-RA | 573..1377 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22459755..22460559 | 820..16 | 4025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:43:05 has no hits.
BO04270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:31 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11440-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:32 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11440-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:20 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 570..1377 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:54 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 570..1377 | 10..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:54 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22459755..22460562 | 10..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:20 Download gff for
BO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22452855..22453662 | 10..820 | 99 | | Minus |
BO04270.complete Sequence
1036 bp (1036 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629709
> BO04270.complete
GAAGTTATCAGTCGACATGCACACTTTCAAAAGGGGCTTCTTTTGCTCTG
ATCTGAGCATACGGTATCCCTACAAGGACTGCACGATCACGGTGCCGATG
CTACTGCTCATGATGCTCCTGCTCCCGATGCTCTTCGTGGCCGTGGTGGA
GATCATGCGGATCTGCAAGCGCTTCCGCACCAGGCTCTACTTCCGCAATC
TGTGGCGCGCAGAGGCCACCTTCAGCTTCGGCTTCATAGCCACCTATCTC
ACCACCGAGCTGGCGAAGCACGCCGTCGGGCGGCTGAGGCCGCACTTCTT
CCACGGTTGCCAGCCGCGCCTCGACGATGGCAGCTCCTGCTCGGACCTCC
AGAACGCTGAGCTGTACGTGGAGCAGTTCCACTGCACTAACAACAACCTC
TCCACGCGACAGATCCGCGAGTTGCACGTCAGTTTCCCGAGTGCCCACAG
CAGCTTGAGCTTCTATTCGATGGTCCTGCTGGCCCTCTACGTACACGGGG
TGTGGCGGGGACGAGGGGGAGTGCGAGTCCTGCGGCACGTCCTGCAGTTC
CTGCTCCTTATGGCTGCCCTCTGCGTTTCCCTGAGCCGCGTAGCCGACTA
CTGGCACCACTGGTCCGACGTCCTGGCCGGCGCCCTCCTTGGAGTGACCT
ATGCCGCCATCACAGCTGCCTACGTGGGTAACCTATTGCGGCGGCAGACC
AGCTCCACCGGCAGAATCCCGCCCTCCTTGAACTACAGCCACCACCTGCA
CCACCAGCTAATGGCGGACAACAATAACTCGACGGCCTCTGCTAAGGTCC
ACTTCCTGGCAGCAGCTGCTTCCGCTTCAATGACCACAACGACGCCGCTC
GACGACATCCAGGACTCCGATGTGGAGGATTCCAGGGACTGCAGAGACTC
CGAGGACTCGCACGACTCTCAGGACTCGCACGCAGAGAATGAGGACGACA
ACGAGGAGGTATACAAGTCGCAAATGTCGCGTCCCGTCACTCCGCCCACC
GATCTGACCCACGTCGTCGCAAGCTTTCTAGACCAT
BO04270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laza-RA | 1005 | CG11440-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laza-RA | 2316 | CG11440-RA | 573..1575 | 16..1018 | 5015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22459557..22460559 | 1018..16 | 5015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:17 has no hits.
BO04270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:37 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 1..1005 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:20 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 622..1627 | 10..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:41 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 574..1575 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:37 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 622..1627 | 10..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:23 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laza-RA | 574..1575 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:23 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22459554..22460558 | 17..1020 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:41 Download gff for
BO04270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22452654..22453658 | 17..1020 | 99 | | Minus |
BO04270.pep Sequence
Translation from 16 to 1036
> BO04270.pep
MHTFKRGFFCSDLSIRYPYKDCTITVPMLLLMMLLLPMLFVAVVEIMRIC
KRFRTRLYFRNLWRAEATFSFGFIATYLTTELAKHAVGRLRPHFFHGCQP
RLDDGSSCSDLQNAELYVEQFHCTNNNLSTRQIRELHVSFPSAHSSLSFY
SMVLLALYVHGVWRGRGGVRVLRHVLQFLLLMAALCVSLSRVADYWHHWS
DVLAGALLGVTYAAITAAYVGNLLRRQTSSTGRIPPSLNYSHHLHHQLMA
DNNNSTASAKVHFLAAAASASMTTTTPLDDIQDSDVEDSRDCRDSEDSHD
SQDSHAENEDDNEEVYKSQMSRPVTPPTDLTHVVASFLDH
BO04270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laza-PA | 334 | CG11440-PA | 1..334 | 1..334 | 1761 | 100 | Plus |
| CG11426-PA | 340 | CG11426-PA | 63..291 | 5..223 | 498 | 43.5 | Plus |
| CG11438-PB | 341 | CG11438-PB | 34..293 | 4..258 | 486 | 40.1 | Plus |
| CG11438-PA | 341 | CG11438-PA | 34..293 | 4..258 | 486 | 40.1 | Plus |
| wun-PA | 300 | CG8804-PA | 35..273 | 4..226 | 483 | 40.9 | Plus |
